{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T07:55:38Z","timestamp":1778658938978,"version":"3.51.4"},"reference-count":33,"publisher":"Springer Science and Business Media LLC","issue":"S2","license":[{"start":{"date-parts":[[2011,3,29]],"date-time":"2011-03-29T00:00:00Z","timestamp":1301356800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-s2-s1","type":"journal-article","created":{"date-parts":[[2011,4,7]],"date-time":"2011-04-07T14:40:42Z","timestamp":1302187242000},"source":"Crossref","is-referenced-by-count":52,"title":["A linguistic rule-based approach to extract drug-drug interactions from pharmacological documents"],"prefix":"10.1186","volume":"12","author":[{"given":"Isabel","family":"Segura-Bedmar","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Paloma","family":"Mart\u00ednez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C\u00e9sar","family":"de Pablo-S\u00e1nchez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,3,29]]},"reference":[{"issue":"03","key":"4449_CR1","doi-asserted-by":"publisher","first-page":"134","DOI":"10.1016\/S1130-6343(09)71155-9","volume":"33","author":"A Rodr\u00edguez-Terol","year":"2009","unstructured":"Rodr\u00edguez-Terol A, Camacho C, et al.: Calidad estructural de las bases de datos de interacciones. Farmacia Hospitalaria 2009, 33(03):134. 10.1016\/S1130-6343(09)71155-9","journal-title":"Farmacia Hospitalaria"},{"issue":"3","key":"4449_CR2","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1023\/A:1024077018902","volume":"25","author":"P Hansten","year":"2003","unstructured":"Hansten P: Drug interaction management. Pharmacy World & Science 2003, 25(3):94\u201397. 10.1023\/A:1024077018902","journal-title":"Pharmacy World & Science"},{"issue":"2","key":"4449_CR3","doi-asserted-by":"publisher","first-page":"393","DOI":"10.1016\/j.jbi.2007.11.008","volume":"41","author":"D Zhou","year":"2007","unstructured":"Zhou D, He Y: Extracting interactions between proteins from the literature. Journal of Biomedical Informatics 2007, 41(2):393\u2013407. 10.1016\/j.jbi.2007.11.008","journal-title":"Journal of Biomedical Informatics"},{"key":"4449_CR4","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1007\/s11168-006-9011-1","volume":"4","author":"A Siddharthan","year":"2006","unstructured":"Siddharthan A: Syntactic simplification and text cohesion. Research on Language & Computation 2006, 4: 77\u2013109. 10.1007\/s11168-006-9011-1","journal-title":"Research on Language & Computation"},{"key":"4449_CR5","first-page":"19","volume-title":"Proceedings of the BioCreative II. 5 Workshop 2009 on Digital Annotations","author":"M Krallinger","year":"2009","unstructured":"Krallinger M, Leitner F, Valencia A: The BioCreative II.5 challenge overview. Proceedings of the BioCreative II. 5 Workshop 2009 on Digital Annotations 2009, 19."},{"issue":"6","key":"4449_CR6","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1016\/j.ijmedinf.2005.06.010","volume":"75","author":"M Huang","year":"2006","unstructured":"Huang M, Zhu X, Li M: A hybrid method for relation extraction from biomedical literature. International Journal of Medical Informatics 2006, 75(6):443\u2013455. 10.1016\/j.ijmedinf.2005.06.010","journal-title":"International Journal of Medical Informatics"},{"key":"4449_CR7","first-page":"17","volume-title":"Proceedings of the AMIA Symposium","author":"A Aronson","year":"2001","unstructured":"Aronson A: Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proceedings of the AMIA Symposium 2001, 17\u201322."},{"key":"4449_CR8","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1186\/1471-2105-8-50","volume":"8","author":"S Pyysalo","year":"2007","unstructured":"Pyysalo S, Ginter F, Heimonen J, Bj\u00f6rne J, Boberg J, J\u00e4rvinen J, Salakoski T: BioInfer: a corpus for information extraction in the biomedical domain. BMC bioinformatics 2007, 8: 50. 10.1186\/1471-2105-8-50","journal-title":"BMC bioinformatics"},{"issue":"Suppl 2","key":"4449_CR9","doi-asserted-by":"publisher","first-page":"S4","DOI":"10.1186\/gb-2008-9-s2-s4","volume":"9","author":"M Krallinger","year":"2008","unstructured":"Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A: Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biology 2008, 9(Suppl 2):S4. 10.1186\/gb-2008-9-s2-s4","journal-title":"Genome Biology"},{"issue":"2","key":"4449_CR10","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1016\/j.artmed.2004.07.016","volume":"33","author":"R Bunescu","year":"2005","unstructured":"Bunescu R, Ge R, Kate RJ, Marcotte EM, Mooney RJ, Ramani AK, Wong YW: Comparative experiments on learning information extractors for proteins and their interactions. Artificial Intelligence in Medicine 2005, 33(2):139\u2013155. 10.1016\/j.artmed.2004.07.016","journal-title":"Artificial Intelligence in Medicine"},{"issue":"Suppl 3","key":"4449_CR11","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2105-9-S3-S6","volume":"9","author":"S Pyysalo","year":"2008","unstructured":"Pyysalo S, Airola A, Heimonen J, Bjorne J, Ginter F, Salakoski T: Comparative analysis of five protein-protein interaction corpora. BMC Bioinformatics 2008, 9(Suppl 3):S6. 10.1186\/1471-2105-9-S3-S6","journal-title":"BMC Bioinformatics"},{"issue":"Database issue","key":"4449_CR12","doi-asserted-by":"crossref","first-page":"D901","DOI":"10.1093\/nar\/gkm958","volume":"36","author":"D Wishart","year":"2008","unstructured":"Wishart D, Knox C, Guo A, Cheng D, Shrivastava S, Tzur D, Gautam B, Hassanali M: DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic acids research 2008, 36(Database issue):D901\u20136.","journal-title":"Nucleic acids research"},{"key":"4449_CR13","first-page":"31","volume":"9","author":"E Williams","year":"1978","unstructured":"Williams E: Across-the-board rule application. Linguistic Inquiry 1978, 9: 31\u201343.","journal-title":"Linguistic Inquiry"},{"key":"4449_CR14","volume-title":"The structure of English: An introduction to the construction of English sentences","author":"C Fries","year":"1952","unstructured":"Fries C: The structure of English: An introduction to the construction of English sentences. Harcourt, Brace; 1952."},{"key":"4449_CR15","volume-title":"The Structure of American English","author":"W Francis","year":"1958","unstructured":"Francis W: The Structure of American English. The Ronald Press Company; 1958."},{"key":"4449_CR16","volume-title":"A grammar of the English language: syntax","author":"G Curme","year":"1977","unstructured":"Curme G, Curme G: A grammar of the English language: syntax. Verbatim Books; 1977."},{"key":"4449_CR17","volume-title":"Analytic syntax","author":"O Jespersen","year":"1984","unstructured":"Jespersen O, McCawley J: Analytic syntax. University of Chicago Press; 1984."},{"issue":"3","key":"4449_CR18","first-page":"391","volume":"13","author":"N Burton-Roberts","year":"1975","unstructured":"Burton-Roberts N: Nominal apposition. Foundations of language 1975, 13(3):391\u2013419.","journal-title":"Foundations of language"},{"key":"4449_CR19","first-page":"34","volume-title":"Proceedings of the First International Workshop on Multimedia Annotation. Tokyo (Japan)","author":"N Calzolari","year":"2001","unstructured":"Calzolari N, Lenci A, Zampolli A: The EAGLES\/ISLE computational lexicon working group for multilingual computational lexicons. Proceedings of the First International Workshop on Multimedia Annotation. Tokyo (Japan) 2001, 34\u201339."},{"key":"4449_CR20","volume-title":"Writing paragraphs and essays: Integrating reading, writing, and grammar skills","author":"J Wingersky","year":"2008","unstructured":"Wingersky J, Boerner J, Holguin-Balogh D: Writing paragraphs and essays: Integrating reading, writing, and grammar skills. Heinle; 2008."},{"issue":"17-18","key":"4449_CR21","doi-asserted-by":"publisher","first-page":"816","DOI":"10.1016\/j.drudis.2008.06.001","volume":"13","author":"I Segura-Bedmar","year":"2008","unstructured":"Segura-Bedmar I, Mart\u00ednez P, Segura-Bedmar M: Drug name recognition and classification in biomedical texts A case study outlining approaches underpinning automated systems. Drug Discovery Today 2008, 13(17\u201318):816\u2013823. 10.1016\/j.drudis.2008.06.001","journal-title":"Drug Discovery Today"},{"key":"4449_CR22","first-page":"1943","volume-title":"Proceedings of LREC","author":"Y Tateisi","year":"2008","unstructured":"Tateisi Y, Miyao Y, Sagae K, Tsujii J: GENIA-GR: a Grammatical Relation Corpus for Parser Evaluation in the Biomedical Domain. Proceedings of LREC 2008, 1943\u20131950."},{"issue":"2","key":"4449_CR23","first-page":"330","volume":"19","author":"M Marcus","year":"1993","unstructured":"Marcus M, Marcinkiewicz M, Santorini B: Building a large annotated corpus of English: The Penn Treebank. Computational linguistics 1993, 19(2):330.","journal-title":"Computational linguistics"},{"key":"4449_CR24","first-page":"3","volume-title":"Advances in neural information processing systems","author":"D Klein","year":"2003","unstructured":"Klein D, Manning C: Fast exact inference with a factored model for natural language parsing. Advances in neural information processing systems 2003, 3\u201310."},{"issue":"Suppl 2","key":"4449_CR25","doi-asserted-by":"publisher","first-page":"S1","DOI":"10.1186\/1471-2105-11-S2-S1","volume":"11","author":"I Segura-Bedmar","year":"2010","unstructured":"Segura-Bedmar I, Crespo M, de Pablo-Sanchez C, Mart\u00ednez P: Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents. BMC Bioinformatics 2010, 11(Suppl 2):S1. 10.1186\/1471-2105-11-S2-S1","journal-title":"BMC Bioinformatics"},{"key":"4449_CR26","volume-title":"2nd Web People Search Evaluation Workshop (WePS 2009), 18th WWW Conference","author":"C de Pablo-S\u00e1nchez","year":"2009","unstructured":"de Pablo-S\u00e1nchez C, Mart\u00ednez Fern\u00e1ndez P: UC3M at WePS2-AE: Acquiring Patterns for People Attribute Extraction from Webpages. 2nd Web People Search Evaluation Workshop (WePS 2009), 18th WWW Conference 2009."},{"issue":"Suppl 5","key":"4449_CR27","doi-asserted-by":"publisher","first-page":"P9","DOI":"10.1186\/1471-2105-11-S5-P9","volume":"11","author":"I Segura-Bedmar","year":"2010","unstructured":"Segura-Bedmar I, Mart\u00ednez P, de Pablo-Sanchez C: Extracting drug-drug interactions from biomedical texts. BMC Bioinformatics 2010, 11(Suppl 5):P9. 10.1186\/1471-2105-11-S5-P9","journal-title":"BMC Bioinformatics"},{"key":"4449_CR28","first-page":"54","volume-title":"Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics","author":"S Ahmed","year":"2005","unstructured":"Ahmed S, Chidambaram D, Davulcu H, Baral C: IntEx: A Syntactic Role Driven Protein-Protein Interaction Extractor for Bio-Medical Text. Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics 2005, 54\u201361."},{"key":"4449_CR29","volume-title":"Proceedings of the International Symposium on Languages in Biology and Medicine (LBM short oral presentations)","author":"R S\u00e6tre","year":"2007","unstructured":"S\u00e6tre R, Sagae K, Tsujii J: Syntactic features for protein-protein interaction extraction. Proceedings of the International Symposium on Languages in Biology and Medicine (LBM short oral presentations) 2007."},{"key":"4449_CR30","first-page":"37","volume-title":"Proceedings of the BioCreative II. 5 Workshop 2009 on Digital Annotations","author":"K Verspoora","year":"2009","unstructured":"Verspoora K, Roeder C, Johnson H, Cohen K, Baumgartner W, Hunter L: Information Extraction of Normalized Protein Interaction Pairs Utilizing Linguistic and Semantic Cues. Proceedings of the BioCreative II. 5 Workshop 2009 on Digital Annotations 2009, 37."},{"key":"4449_CR31","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1016\/j.jbi.2009.08.013","volume":"43","author":"Z Yang","year":"2009","unstructured":"Yang Z, Lin H, Li Y: BioPPISVMExtractor: A protein\u2013protein interaction extractor for biomedical literature using SVM and rich feature sets. Journal of Biomedical Informatics 2009, 43: 88\u201396. 10.1016\/j.jbi.2009.08.013","journal-title":"Journal of Biomedical Informatics"},{"key":"4449_CR32","first-page":"29","volume-title":"Proceedings of the BioCreative II. 5 Workshop 2009 on Digital Annotations","author":"Y Chen","year":"2009","unstructured":"Chen Y, Liu F, Manderick B: Normalizing Interactor Proteins and Extracting Interaction Protein Pairs using Support Vector Machines. Proceedings of the BioCreative II. 5 Workshop 2009 on Digital Annotations 2009, 29."},{"issue":"Suppl 11","key":"4449_CR33","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/1471-2105-9-S11-S2","volume":"9","author":"A Airola","year":"2008","unstructured":"Airola A, Pyysalo S, Bjorne J, Pahikkala T, Ginter F, Salakoski T: All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. BMC Bioinformatics 2008, 9(Suppl 11):S2. 10.1186\/1471-2105-9-S11-S2","journal-title":"BMC Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-S2-S1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-S2-S1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-S2-S1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T05:29:45Z","timestamp":1548221385000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-S2-S1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,3,29]]},"references-count":33,"journal-issue":{"issue":"S2","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4449"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-s2-s1","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,3,29]]},"article-number":"S1"}}