{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,3,31]],"date-time":"2022-03-31T07:55:45Z","timestamp":1648713345897},"reference-count":24,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2012,6,19]],"date-time":"2012-06-19T00:00:00Z","timestamp":1340064000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2012,12]]},"DOI":"10.1186\/1471-2105-13-137","type":"journal-article","created":{"date-parts":[[2012,6,28]],"date-time":"2012-06-28T09:01:55Z","timestamp":1340874115000},"source":"Crossref","is-referenced-by-count":1,"title":["A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels"],"prefix":"10.1186","volume":"13","author":[{"given":"Steven H","family":"Wu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael A","family":"Black","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robyn A","family":"North","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Allen G","family":"Rodrigo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2012,6,19]]},"reference":[{"issue":"10","key":"5451_CR1","doi-asserted-by":"crossref","first-page":"4007","DOI":"10.1016\/S0021-9258(19)41496-8","volume":"250","author":"PH O'Farrell","year":"1975","unstructured":"O'Farrell PH: High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975, 250(10):4007\u20134021.","journal-title":"J Biol Chem"},{"key":"5451_CR2","doi-asserted-by":"publisher","first-page":"894","DOI":"10.1214\/10-AOAS407","volume":"5","author":"JS Morris","year":"2011","unstructured":"Morris JS, Baladandayuthapani V, Herrick RC, Sanna P, Gutstein H: Automated analysis of quantitative image data using isomorphic functional mixed models, with application to proteomics data. The Annals of Applied Statistics 2011, 5: 894\u2013923. 10.1214\/10-AOAS407","journal-title":"The Annals of Applied Statistics"},{"issue":"8","key":"5451_CR3","doi-asserted-by":"publisher","first-page":"1567","DOI":"10.1002\/pmic.200300459","volume":"3","author":"AW Dowsey","year":"2003","unstructured":"Dowsey AW, Dunn MJ, Yang G-Z: The role of bioinformatics in two-dimensional gel electrophoresis. Proteomics 2003, 3(8):1567\u20131596. 10.1002\/pmic.200300459","journal-title":"Proteomics"},{"issue":"6","key":"5451_CR4","doi-asserted-by":"publisher","first-page":"1223","DOI":"10.1007\/s00253-007-1128-0","volume":"76","author":"M Berth","year":"2007","unstructured":"Berth M, Moser FM, Kolbe M, Bernhardt J: The state of the art in the analysis of two-dimensional gel electrophoresis images. Appl Microbiol Biotechnol 2007, 76(6):1223\u20131243. 10.1007\/s00253-007-1128-0","journal-title":"Appl Microbiol Biotechnol"},{"issue":"6","key":"5451_CR5","doi-asserted-by":"publisher","first-page":"1210","DOI":"10.1021\/pr049886m","volume":"3","author":"J Chang","year":"2004","unstructured":"Chang J, Van Remmen H, Ward WF, Regnier FE, Richardson A, Cornell J: Processing of data generated by 2-dimensional gel electrophoresis for statistical analysis: missing data, normalization, and statistics. J Proteome Res 2004, 3(6):1210\u20131218. 10.1021\/pr049886m","journal-title":"J Proteome Res"},{"issue":"20","key":"5451_CR6","doi-asserted-by":"publisher","first-page":"5577","DOI":"10.1002\/pmic.200600223","volume":"6","author":"DG Biron","year":"2006","unstructured":"Biron DG, Brun C, Lefevre T, Lebarbenchon C, Loxdale HD, Chevenet F, Brizard JP, Thomas F: The pitfalls of proteomics experiments without the correct use of bioinformatics tools. Proteomics 2006, 6(20):5577\u20135596. 10.1002\/pmic.200600223","journal-title":"Proteomics"},{"issue":"8","key":"5451_CR7","doi-asserted-by":"publisher","first-page":"1289","DOI":"10.1002\/elps.200600414","volume":"28","author":"S Jacobsen","year":"2007","unstructured":"Jacobsen S, Grove H, Nedenskov Jensen K, S\u00f8rensen HA, Jessen F, Hollung K, Uhlen AK, J\u00f8rgensen BM, F\u00e6rgestad EM, S\u00f8ndergaard I: Multivariate analysis of 2-DE protein patterns - Practical approaches. Electrophoresis 2007, 28(8):1289\u20131299. 10.1002\/elps.200600414","journal-title":"Electrophoresis"},{"issue":"12","key":"5451_CR8","doi-asserted-by":"publisher","first-page":"3399","DOI":"10.1021\/pr0603250","volume":"5","author":"H Grove","year":"2006","unstructured":"Grove H, Hollung K, Uhlen AK, Martens H, Faergestad EM: Challenges related to analysis of protein spot volumes from two-dimensional gel electrophoresis as revealed by replicate gels. J Proteome Res 2006, 5(12):3399\u20133410. 10.1021\/pr0603250","journal-title":"J Proteome Res"},{"issue":"9","key":"5451_CR9","doi-asserted-by":"publisher","first-page":"e1000509","DOI":"10.1371\/journal.pcbi.1000509","volume":"5","author":"SH Wu","year":"2009","unstructured":"Wu SH, Black MA, North RA, Atkinson KR, Rodrigo AG: A statistical model to identify differentially expressed proteins in 2D PAGE gels. PLoS Comput Biol 2009, 5(9):e1000509. 10.1371\/journal.pcbi.1000509","journal-title":"PLoS Comput Biol"},{"issue":"23","key":"5451_CR10","doi-asserted-by":"publisher","first-page":"4508","DOI":"10.1002\/elps.200500253","volume":"26","author":"\u00c5M Wheelock","year":"2005","unstructured":"Wheelock \u00c5M, Buckpitt AR: Software-induced variance in two-dimensional gel electrophoresis image analysis. Electrophoresis 2005, 26(23):4508\u20134520. 10.1002\/elps.200500253","journal-title":"Electrophoresis"},{"issue":"6","key":"5451_CR11","doi-asserted-by":"publisher","first-page":"1202","DOI":"10.1002\/pmic.200800576","volume":"10","author":"D Albrecht","year":"2010","unstructured":"Albrecht D, Kniemeyer O, Brakhage AA, Guthke R: Missing values in gel-based proteomics. Proteomics 2010, 10(6):1202\u20131211. 10.1002\/pmic.200800576","journal-title":"Proteomics"},{"issue":"8","key":"5451_CR12","doi-asserted-by":"publisher","first-page":"3335","DOI":"10.1021\/pr070137p","volume":"6","author":"M Krogh","year":"2007","unstructured":"Krogh M, Fernandez C, Teilum M, Bengtsson S, James P: A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments. J Proteome Res 2007, 6(8):3335\u20133343. 10.1021\/pr070137p","journal-title":"J Proteome Res"},{"issue":"1","key":"5451_CR13","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1093\/biomet\/57.1.97","volume":"57","author":"WK Hastings","year":"1970","unstructured":"Hastings WK: Monte Carlo sampling methods using Markov chains and their applications. Biometrika 1970, 57(1):97\u2013109. 10.1093\/biomet\/57.1.97","journal-title":"Biometrika"},{"issue":"6","key":"5451_CR14","doi-asserted-by":"publisher","first-page":"1087","DOI":"10.1063\/1.1699114","volume":"21","author":"N Metropolis","year":"1953","unstructured":"Metropolis N, Rosenbluth AW, Rosenbluth MN, Teller AH, Teller E: Equation of State Calculations by Fast Computing Machines. J Chem Phys 1953, 21(6):1087\u20131092. 10.1063\/1.1699114","journal-title":"J Chem Phys"},{"key":"5451_CR15","volume-title":"Proteomic biomarker discovery for preeclampsia.PhD thesis","author":"K Atkinson","year":"2008","unstructured":"Atkinson K: Proteomic biomarker discovery for preeclampsia.PhD thesis. Auckland: University of Auckland; 2008."},{"key":"5451_CR16","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1214\/06-BA117A","volume":"1","author":"A Gelman","year":"2006","unstructured":"Gelman A: Prior distributions for variance parameters in hierarchical models. Bayesian Analysis 2006, 1: 515\u2013533.","journal-title":"Bayesian Analysis"},{"issue":"1","key":"5451_CR17","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1214\/aoap\/1034625254","volume":"7","author":"GO Roberts","year":"1997","unstructured":"Roberts GO, Gelman A, Gilks WR: Weak Convergence and Optimal Scaling of Random Walk Metropolis Algorithms. Ann Appl Probab 1997, 7(1):110\u2013120.","journal-title":"Ann Appl Probab"},{"issue":"4","key":"5451_CR18","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1214\/ss\/1015346320","volume":"16","author":"GO Roberts","year":"2001","unstructured":"Roberts GO, Rosenthal JS: Optimal Scaling for Various Metropolis-Hastings Algorithms. Stat Sci 2001, 16(4):351\u2013367. 10.1214\/ss\/1015346320","journal-title":"Stat Sci"},{"issue":"2","key":"5451_CR19","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1111\/1467-9868.00070","volume":"59","author":"GO Roberts","year":"1997","unstructured":"Roberts GO, Sahu SK: Updating Schemes, Correlation Structure, Blocking and Parameterization for the Gibbs Sampler. Journal of the Royal Statistical Society Series B (Methodological) 1997, 59(2):291\u2013317. 10.1111\/1467-9868.00070","journal-title":"Journal of the Royal Statistical Society Series B (Methodological)"},{"issue":"4","key":"5451_CR20","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1093\/biomet\/85.4.755","volume":"85","author":"C Liu","year":"1998","unstructured":"Liu C, Rubin DB, Wu YN: Parameter expansion to accelerate EM: The PX-EM algorithm. Biometrika 1998, 85(4):755\u2013770. 10.1093\/biomet\/85.4.755","journal-title":"Biometrika"},{"key":"5451_CR21","volume-title":"Tracer v1.4.1","author":"A Rambaut","year":"2007","unstructured":"Rambaut A, Drummond A: Tracer v1.4.1. 2007. Available from http:\/\/beast.bio.ed.ac.uk\/Tracer Available from"},{"issue":"1","key":"5451_CR22","doi-asserted-by":"publisher","first-page":"18","DOI":"10.1186\/1471-2105-10-18","volume":"10","author":"H Binder","year":"2009","unstructured":"Binder H, Schumacher M: Incorporating pathway information into boosting estimation of high-dimensional risk prediction models. BMC Bioinforma 2009, 10(1):18. 10.1186\/1471-2105-10-18","journal-title":"BMC Bioinforma"},{"issue":"8","key":"5451_CR23","doi-asserted-by":"publisher","first-page":"754","DOI":"10.1093\/bioinformatics\/17.8.754","volume":"17","author":"JP Huelsenbeck","year":"2001","unstructured":"Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17(8):754\u2013755. 10.1093\/bioinformatics\/17.8.754","journal-title":"Bioinformatics"},{"issue":"3","key":"5451_CR24","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1093\/bioinformatics\/btg427","volume":"20","author":"G Altekar","year":"2004","unstructured":"Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F: Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 2004, 20(3):407\u2013415. 10.1093\/bioinformatics\/btg427","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-137.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-13-137\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-137.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,19]],"date-time":"2022-01-19T20:09:09Z","timestamp":1642622949000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-13-137"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,6,19]]},"references-count":24,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2012,12]]}},"alternative-id":["5451"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-13-137","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,6,19]]},"article-number":"137"}}