{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,28]],"date-time":"2026-03-28T20:38:04Z","timestamp":1774730284044,"version":"3.50.1"},"reference-count":48,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2012,5,10]],"date-time":"2012-05-10T00:00:00Z","timestamp":1336608000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2012,12]]},"DOI":"10.1186\/1471-2105-13-92","type":"journal-article","created":{"date-parts":[[2012,5,10]],"date-time":"2012-05-10T08:18:30Z","timestamp":1336637910000},"source":"Crossref","is-referenced-by-count":98,"title":["A comparative evaluation of sequence classification programs"],"prefix":"10.1186","volume":"13","author":[{"given":"Adam L","family":"Bazinet","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael P","family":"Cummings","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2012,5,10]]},"reference":[{"issue":"Database issue","key":"5299_CR1","doi-asserted-by":"publisher","first-page":"D48","DOI":"10.1093\/nar\/gkr1202","volume":"40","author":"DA Benson","year":"2012","unstructured":"Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW: GenBank. Nucleic Acids Res 2012, 40(Database issue):D48\u201353.","journal-title":"Nucleic Acids Res"},{"issue":"suppl 1","key":"5299_CR2","doi-asserted-by":"publisher","first-page":"D211","DOI":"10.1093\/nar\/gkp985","volume":"38","author":"RD Finn","year":"2010","unstructured":"Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer ELL, Eddy SR, Bateman A: The Pfam protein families database. Nucleic Acids Res 2010, 38(suppl 1):D211-D222.","journal-title":"Nucleic Acids Res"},{"key":"5299_CR3","doi-asserted-by":"publisher","first-page":"316","DOI":"10.1186\/1471-2105-10-316","volume":"10","author":"A Kislyuk","year":"2009","unstructured":"Kislyuk A, Bhatnagar S, Dushoff J, Weitz JS: Unsupervised statistical clustering of environmental shotgun sequences. BMC Bioinf 2009, 10: 316. 10.1186\/1471-2105-10-316","journal-title":"BMC Bioinf"},{"key":"5299_CR4","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1007\/978-3-540-78839-3_3","volume-title":"Proceedings of the 12th annual international conference on Research in computational molecular biology, RECOMB\u201908","author":"S Chatterji","year":"2008","unstructured":"Chatterji S, Yamazaki I, Bai Z, Eisen J: CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads. In Proceedings of the 12th annual international conference on Research in computational molecular biology, RECOMB\u201908. Springer-Verlag, Berlin, Heidelberg; 2008:17\u201328."},{"key":"5299_CR5","doi-asserted-by":"publisher","first-page":"544","DOI":"10.1186\/1471-2105-11-544","volume":"11","author":"D Kelley","year":"2010","unstructured":"Kelley D, Salzberg S: Clustering metagenomic sequences with interpolated Markov models. BMC Bioinf 2010, 11: 544. 10.1186\/1471-2105-11-544","journal-title":"BMC Bioinf"},{"issue":"7","key":"5299_CR6","doi-asserted-by":"publisher","first-page":"5069","DOI":"10.1128\/AEM.03006-05","volume":"72","author":"TZ DeSantis","year":"2006","unstructured":"DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL: Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006, 72(7):5069\u201372. 10.1128\/AEM.03006-05","journal-title":"Appl Environ Microbiol"},{"issue":"Database issue","key":"5299_CR7","doi-asserted-by":"publisher","first-page":"D141","DOI":"10.1093\/nar\/gkn879","volume":"37","author":"JR Cole","year":"2009","unstructured":"Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009, 37(Database issue):D141\u20135.","journal-title":"Nucleic Acids Res"},{"issue":"3","key":"5299_CR8","doi-asserted-by":"publisher","first-page":"e325","DOI":"10.1371\/journal.pone.0000325","volume":"2","author":"XJ Min","year":"2007","unstructured":"Min XJ, Hickey DA: DNA barcodes provide a quick preview of mitochondrial genome composition. PLoS One 2007, 2(3):e325. 10.1371\/journal.pone.0000325","journal-title":"PLoS One"},{"issue":"31","key":"5299_CR9","doi-asserted-by":"publisher","first-page":"12794","DOI":"10.1073\/pnas.0905845106","volume":"106","author":"CBOL Plant Working Group","year":"2009","unstructured":"CBOL Plant Working Group: A DNA barcode for land plants. Proc Natl Acad Sci USA 2009, 106(31):12794\u20137.","journal-title":"Proc Natl Acad Sci USA"},{"issue":"5765","key":"5299_CR10","doi-asserted-by":"publisher","first-page":"1283","DOI":"10.1126\/science.1123061","volume":"311","author":"FD Ciccarelli","year":"2006","unstructured":"Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P: Toward automatic reconstruction of a highly resolved tree of life. Science 2006, 311(5765):1283\u20137. 10.1126\/science.1123061","journal-title":"Science"},{"issue":"11","key":"5299_CR11","doi-asserted-by":"publisher","first-page":"e280","DOI":"10.1371\/journal.pbio.0060280","volume":"6","author":"L Dethlefsen","year":"2008","unstructured":"Dethlefsen L, Huse S, Sogin ML, Relman DA: The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008, 6(11):e280. 10.1371\/journal.pbio.0060280","journal-title":"PLoS Biol"},{"issue":"17","key":"5299_CR12","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"SF Altschul","year":"1997","unstructured":"Altschul SF, Madden TL, Sch\u00e4ffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389\u2013402. 10.1093\/nar\/25.17.3389","journal-title":"Nucleic Acids Res"},{"issue":"7","key":"5299_CR13","doi-asserted-by":"publisher","first-page":"2230","DOI":"10.1093\/nar\/gkn038","volume":"36","author":"L Krause","year":"2008","unstructured":"Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J: Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Res 2008, 36(7):2230\u20139. 10.1093\/nar\/gkn038","journal-title":"Nucleic Acids Res"},{"issue":"14","key":"5299_CR14","doi-asserted-by":"publisher","first-page":"e91","DOI":"10.1093\/nar\/gkr225","volume":"39","author":"W Gerlach","year":"2011","unstructured":"Gerlach W, Stoye J: Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res 2011, 39(14):e91. 10.1093\/nar\/gkr225","journal-title":"Nucleic Acids Res"},{"issue":"13","key":"5299_CR15","doi-asserted-by":"publisher","first-page":"1595","DOI":"10.1093\/bioinformatics\/btq230","volume":"26","author":"H Stranneheim","year":"2010","unstructured":"Stranneheim H, Kaller M, Allander T, Andersson B, Arvestad L, Lundeberg J: Classification of DNA sequences using Bloom filters. Bioinformatics 2010, 26(13):1595\u20131600. 10.1093\/bioinformatics\/btq230","journal-title":"Bioinformatics"},{"issue":"4","key":"5299_CR16","doi-asserted-by":"publisher","first-page":"e19259","DOI":"10.1371\/journal.pone.0019259","volume":"6","author":"M Jones","year":"2011","unstructured":"Jones M, Ghoorah A, Blaxter M: jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units. PLoS One 2011, 6(4):e19259. 10.1371\/journal.pone.0019259","journal-title":"PLoS One"},{"issue":"4","key":"5299_CR17","doi-asserted-by":"publisher","first-page":"568","DOI":"10.1093\/bioinformatics\/btp682","volume":"26","author":"M Horton","year":"2010","unstructured":"Horton M, Bodenhausen N, Bergelson J: MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences. Bioinformatics 2010, 26(4):568\u20139. 10.1093\/bioinformatics\/btp682","journal-title":"Bioinformatics"},{"issue":"3","key":"5299_CR18","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1101\/gr.5969107","volume":"17","author":"DH Huson","year":"2007","unstructured":"Huson DH, Auch AF, Qi J, Schuster SC: MEGAN analysis of metagenomic data. Genome Res 2007, 17(3):377\u201386. 10.1101\/gr.5969107","journal-title":"Genome Res"},{"key":"5299_CR19","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1109\/BIBM.2010.5706544","volume-title":"IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","author":"B Liu","year":"2010","unstructured":"Liu B, Gibbons T, Ghodsi M, Pop M: MetaPhyler: Taxonomic profiling for metagenomic sequences. In IEEE International Conference on Bioinformatics and Biomedicine (BIBM). , Hong Kong; 2010:95\u2013100."},{"key":"5299_CR20","doi-asserted-by":"publisher","first-page":"pdb.prot5368","DOI":"10.1101\/pdb.prot5368","volume":"2010","author":"EM Glass","year":"2010","unstructured":"Glass EM, Wilkening J, Wilke A, Antonopoulos D, Meyer F: Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes. Cold Spring Harb Protoc 2010, 2010: pdb.prot5368. 10.1101\/pdb.prot5368","journal-title":"Cold Spring Harb Protoc"},{"issue":"2","key":"5299_CR21","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1093\/bioinformatics\/btq649","volume":"27","author":"F Gori","year":"2011","unstructured":"Gori F, Folino G, Jetten MSM, Marchiori E: MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics 2011, 27(2):196\u2013203. 10.1093\/bioinformatics\/btq649","journal-title":"Bioinformatics"},{"issue":"14","key":"5299_CR22","doi-asserted-by":"publisher","first-page":"1722","DOI":"10.1093\/bioinformatics\/btp317","volume":"25","author":"M Monzoorul Haque","year":"2009","unstructured":"Monzoorul Haque M, Ghosh TS, Komanduri D, Mande SS: SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. Bioinformatics 2009, 25(14):1722\u201330. 10.1093\/bioinformatics\/btp317","journal-title":"Bioinformatics"},{"key":"5299_CR23","doi-asserted-by":"publisher","first-page":"205969","DOI":"10.1155\/2008\/205969","volume":"2008","author":"G Rosen","year":"2008","unstructured":"Rosen G, Garbarine E, Caseiro D, Polikar R, Sokhansanj B: Metagenome fragment classification using N-mer frequency profiles. Adv Bioinformatics 2008, 2008: 205969.","journal-title":"Adv Bioinformatics"},{"key":"5299_CR24","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1093\/bioinformatics\/btq619","volume":"27","author":"GL Rosen","year":"2011","unstructured":"Rosen GL, Reichenberger ER, Rosenfeld AM: NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads. Bioinformatics 2011, 27: 127\u20139. 10.1093\/bioinformatics\/btq619","journal-title":"Bioinformatics"},{"key":"5299_CR25","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1038\/nmeth976","volume":"4","author":"AC McHardy","year":"2007","unstructured":"McHardy AC, Mart\u00edn HG, Tsirigos A, Hugenholtz P, Rigoutsos I: Accurate phylogenetic classification of variable-length DNA fragments. Nat Methods 2007, 4: 63\u201372. 10.1038\/nmeth976","journal-title":"Nat Methods"},{"issue":"3","key":"5299_CR26","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1038\/nmeth0311-191","volume":"8","author":"KR Patil","year":"2011","unstructured":"Patil KR, Haider P, Pope PB, Turnbaugh PJ, Morrison M, Scheffer T, McHardy AC: Taxonomic metagenome sequence assignment with structured output models. Nat Methods 2011, 8(3):191\u20132. 10.1038\/nmeth0311-191","journal-title":"Nat Methods"},{"issue":"9","key":"5299_CR27","doi-asserted-by":"publisher","first-page":"673","DOI":"10.1038\/nmeth.1358","volume":"6","author":"A Brady","year":"2009","unstructured":"Brady A, Salzberg SL: Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat Methods 2009, 6(9):673-U68. 10.1038\/nmeth.1358","journal-title":"Nat Methods"},{"key":"5299_CR28","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1186\/1471-2105-12-41","volume":"12","author":"OU Nalbantoglu","year":"2011","unstructured":"Nalbantoglu OU, Way SF, Hinrichs SH, Sayood K: RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles. BMC Bioinf 2011, 12: 41. 10.1186\/1471-2105-12-41","journal-title":"BMC Bioinf"},{"issue":"16","key":"5299_CR29","doi-asserted-by":"publisher","first-page":"5261","DOI":"10.1128\/AEM.00062-07","volume":"73","author":"Q Wang","year":"2007","unstructured":"Wang Q, Garrity GM, Tiedje JM, Cole JR: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73(16):5261\u20137. 10.1128\/AEM.00062-07","journal-title":"Appl Environ Microbiol"},{"key":"5299_CR30","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1093\/bioinformatics\/btq608","volume":"27","author":"MH Mohammed","year":"2011","unstructured":"Mohammed MH, Ghosh TS, Singh NK, Mande SS: SPHINX\u2013an algorithm for taxonomic binning of metagenomic sequences. Bioinformatics 2011, 27: 22\u201330. 10.1093\/bioinformatics\/btq608","journal-title":"Bioinformatics"},{"key":"5299_CR31","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1186\/1471-2105-10-56","volume":"10","author":"NN Diaz","year":"2009","unstructured":"Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW: TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinf 2009, 10: 56. 10.1186\/1471-2105-10-56","journal-title":"BMC Bioinf"},{"issue":"3","key":"5299_CR32","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1093\/sysbio\/syr010","volume":"60","author":"SA Berger","year":"2011","unstructured":"Berger SA, Krompass D, Stamatakis A: Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood. Syst Biol 2011, 60(3):291\u2013302. 10.1093\/sysbio\/syr010","journal-title":"Syst Biol"},{"issue":"7","key":"5299_CR33","doi-asserted-by":"publisher","first-page":"1641","DOI":"10.1093\/molbev\/msp077","volume":"26","author":"MN Price","year":"2009","unstructured":"Price MN, Dehal PS, Arkin AP: FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 2009, 26(7):1641\u201350. 10.1093\/molbev\/msp077","journal-title":"Mol Biol Evol"},{"key":"5299_CR34","doi-asserted-by":"publisher","first-page":"538","DOI":"10.1186\/1471-2105-11-538","volume":"11","author":"FA Matsen","year":"2010","unstructured":"Matsen FA, Kodner RB, Armbrust EV: pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinf 2010, 11: 538. 10.1186\/1471-2105-11-538","journal-title":"BMC Bioinf"},{"issue":"10","key":"5299_CR35","doi-asserted-by":"publisher","first-page":"R151","DOI":"10.1186\/gb-2008-9-10-r151","volume":"9","author":"M Wu","year":"2008","unstructured":"Wu M, Eisen JA: A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008, 9(10):R151. 10.1186\/gb-2008-9-10-r151","journal-title":"Genome Biol"},{"key":"5299_CR36","doi-asserted-by":"publisher","first-page":"461","DOI":"10.1186\/1471-2164-11-461","volume":"11","author":"M Stark","year":"2010","unstructured":"Stark M, Berger SA, Stamatakis A, von Mering C: MLTreeMap\u2013accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics 2010, 11: 461. 10.1186\/1471-2164-11-461","journal-title":"BMC Genomics"},{"issue":"7","key":"5299_CR37","doi-asserted-by":"publisher","first-page":"960","DOI":"10.1093\/bioinformatics\/btq070","volume":"26","author":"F Schreiber","year":"2010","unstructured":"Schreiber F, Gumrich P, Daniel R, Meinicke P: Treephyler: fast taxonomic profiling of metagenomes. Bioinformatics 2010, 26(7):960\u20131. 10.1093\/bioinformatics\/btq070","journal-title":"Bioinformatics"},{"issue":"5","key":"5299_CR38","doi-asserted-by":"publisher","first-page":"750","DOI":"10.1080\/10635150802422316","volume":"57","author":"K Munch","year":"2008","unstructured":"Munch K, Boomsma W, Huelsenbeck JP, Willerslev E, Nielsen R: Statistical assignment of DNA sequences using Bayesian phylogenetics. Syst Biol 2008, 57(5):750\u20137. 10.1080\/10635150802422316","journal-title":"Syst Biol"},{"issue":"3","key":"5299_CR39","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1038\/nmeth0311-191","volume":"8","author":"KR Patil","year":"2011","unstructured":"Patil KR, Haider P, Pope PB, Turnbaugh PJ, Morrison M, Scheffer T, McHardy AC: Taxonomic metagenome sequence assignment with structured output models. Nat Methods 2011, 8(3):191\u2013192. 10.1038\/nmeth0311-191","journal-title":"Nat Methods"},{"issue":"6","key":"5299_CR40","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1038\/nmeth1043","volume":"4","author":"K Mavromatis","year":"2007","unstructured":"Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, Kyrpides NC: Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods 2007, 4(6):495\u2013500. 10.1038\/nmeth1043","journal-title":"Nat Methods"},{"issue":"Database issue","key":"5299_CR41","doi-asserted-by":"publisher","first-page":"D32","DOI":"10.1093\/nar\/gkn721","volume":"37","author":"KD Pruitt","year":"2009","unstructured":"Pruitt KD, Tatusova T, Klimke W, Maglott DR: NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res 2009, 37(Database issue):D32\u20136.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"5299_CR42","doi-asserted-by":"publisher","first-page":"564","DOI":"10.1080\/10635150701472164","volume":"56","author":"G Talavera","year":"2007","unstructured":"Talavera G, Castresana J: Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56(4):564\u201377. 10.1080\/10635150701472164","journal-title":"Syst Biol"},{"key":"5299_CR43","volume-title":"Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids","author":"R Durbin","year":"1999","unstructured":"Durbin R, Eddy SR, Krogh A, Mitchison G: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, New York, NY; 1999."},{"issue":"21","key":"5299_CR44","doi-asserted-by":"publisher","first-page":"2688","DOI":"10.1093\/bioinformatics\/btl446","volume":"22","author":"A Stamatakis","year":"2006","unstructured":"Stamatakis A: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22(21):2688\u201390. 10.1093\/bioinformatics\/btl446","journal-title":"Bioinformatics"},{"key":"5299_CR45","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1186\/1471-2164-10-409","volume":"10","author":"P Meinicke","year":"2009","unstructured":"Meinicke P: UFO: a web server for ultra-fast functional profiling of whole genome protein sequences. BMC Genomics 2009, 10: 409. 10.1186\/1471-2164-10-409","journal-title":"BMC Genomics"},{"key":"5299_CR46","first-page":"164","volume":"5","author":"J Felsenstein","year":"1989","unstructured":"Felsenstein J: PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5: 164\u2013166.","journal-title":"Cladistics"},{"key":"5299_CR47","unstructured":"Rambaut A [ http:\/\/tree.bio.ed.ac.uk\/software\/figtree\/ ]"},{"key":"5299_CR48","volume-title":"R: A language and environment for statistical computing. R Foundation for Statistical Computing","author":"R Development Core Team","year":"2011","unstructured":"R Development Core Team: R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria; 2011."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-92.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-13-92\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-92.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,28]],"date-time":"2019-06-28T09:38:16Z","timestamp":1561714696000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-13-92"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,5,10]]},"references-count":48,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2012,12]]}},"alternative-id":["5299"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-13-92","relation":{"has-review":[{"id-type":"doi","id":"10.3410\/f.717982052.793471904","asserted-by":"object"}]},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,5,10]]},"article-number":"92"}}