{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,4,2]],"date-time":"2022-04-02T16:29:19Z","timestamp":1648916959288},"reference-count":25,"publisher":"Springer Science and Business Media LLC","issue":"S10","license":[{"start":{"date-parts":[[2012,6,1]],"date-time":"2012-06-01T00:00:00Z","timestamp":1338508800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2012,6]]},"DOI":"10.1186\/1471-2105-13-s10-s17","type":"journal-article","created":{"date-parts":[[2012,6,29]],"date-time":"2012-06-29T16:35:52Z","timestamp":1340987752000},"source":"Crossref","is-referenced-by-count":3,"title":["Gene network modular-based classification of microarray samples"],"prefix":"10.1186","volume":"13","author":[{"given":"Pingzhao","family":"Hu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shelley B","family":"Bull","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hui","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2012,6,25]]},"reference":[{"key":"5222_CR1","doi-asserted-by":"publisher","first-page":"531","DOI":"10.1126\/science.286.5439.531","volume":"286","author":"TR Golub","year":"1999","unstructured":"Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 1999, 286: 531-536. 10.1126\/science.286.5439.531.","journal-title":"Science"},{"key":"5222_CR2","doi-asserted-by":"publisher","first-page":"505","DOI":"10.1089\/106652702760138592","volume":"9","author":"MD Radmacher","year":"2002","unstructured":"Radmacher MD, McShane LM, Simon R: A paradigm for class prediction using gene expression profiles. J Comput Biol. 2002, 9: 505-512. 10.1089\/106652702760138592.","journal-title":"J Comput Biol"},{"key":"5222_CR3","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1198\/016214502753479248","volume":"97","author":"S Dudoit","year":"2002","unstructured":"Dudoit S, Fridlyand J, Speed TP: Comparison of discrimination methods for the classification of tumors using gene expression data. J Am Stat Assoc. 2002, 97: 77-87. 10.1198\/016214502753479248.","journal-title":"J Am Stat Assoc"},{"key":"5222_CR4","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1093\/biostatistics\/kxj035","volume":"8","author":"Y Guo","year":"2007","unstructured":"Guo Y, Hastie T, Tibshirani R: Regularized linear discriminant analysis and its application in microarrays. Biostatistics. 2007, 8: 86-100. 10.1093\/biostatistics\/kxj035.","journal-title":"Biostatistics"},{"key":"5222_CR5","doi-asserted-by":"publisher","first-page":"2635","DOI":"10.1093\/bioinformatics\/btl442","volume":"22","author":"R Shen","year":"2006","unstructured":"Shen R, Ghosh D, Chinnaiyan AM, Meng Z: Eigengene based linear discriminant model for gene expression data analysis. Bioinformatics. 2006, 22: 2635-2642. 10.1093\/bioinformatics\/btl442.","journal-title":"Bioinformatics"},{"key":"5222_CR6","doi-asserted-by":"publisher","first-page":"1021","DOI":"10.1111\/j.1541-0420.2009.01200.x","volume":"65","author":"H Pang","year":"2009","unstructured":"Pang H, Tong T, Zhao H: Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data. Biometrics. 2009, 65: 1021-1029. 10.1111\/j.1541-0420.2009.01200.x.","journal-title":"Biometrics"},{"key":"5222_CR7","doi-asserted-by":"crossref","first-page":"RESEARCH0031","DOI":"10.1186\/gb-2001-2-9-reports0031","volume":"2","author":"H Li","year":"2001","unstructured":"Li H, Hong F: Cluster-Rasch models for microarray gene expression data. Genome Biol. 2001, 2: RESEARCH0031-","journal-title":"Genome Biol"},{"key":"5222_CR8","doi-asserted-by":"publisher","first-page":"RESEARCH0003","DOI":"10.1186\/gb-2001-2-1-research0003","volume":"2","author":"T Hastie","year":"2001","unstructured":"Hastie T, Tibshirani R, Botstein D, Brown P: Supervised harvesting of expression trees. Genome Biol. 2001, 2: RESEARCH0003-","journal-title":"Genome Biol"},{"key":"5222_CR9","doi-asserted-by":"publisher","first-page":"RESEARCH0069","DOI":"10.1186\/gb-2002-3-12-research0069","volume":"3","author":"D Dettling","year":"2002","unstructured":"Dettling D, B\u00fchlmann P: Supervised clustering of genes. Genome Biol. 2002, 3: RESEARCH0069-","journal-title":"Genome Biol"},{"key":"5222_CR10","doi-asserted-by":"publisher","first-page":"212","DOI":"10.1093\/biostatistics\/kxl002","volume":"8","author":"MY Park","year":"2007","unstructured":"Park MY, Hastie T, Tibshirani R: Averaged gene expressions for regression. Biostatistics. 2007, 8: 212-227.","journal-title":"Biostatistics"},{"key":"5222_CR11","volume-title":"PhD thesis","author":"X Yu","year":"2005","unstructured":"Yu X: Regression methods for microarray data. PhD thesis. 2005, Stanford University"},{"key":"5222_CR12","doi-asserted-by":"publisher","first-page":"2096","DOI":"10.1093\/bioinformatics\/btm309","volume":"23","author":"L Elo","year":"2007","unstructured":"Elo L, Jarvenpaa H, Oresic M, Lahesmaa R, Aittokallio T: Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. Bioinformatics. 2007, 23: 2096-2103. 10.1093\/bioinformatics\/btm309.","journal-title":"Bioinformatics"},{"key":"5222_CR13","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1186\/1752-0509-2-95","volume":"2","author":"A Presson","year":"2008","unstructured":"Presson A, Sobel E, Papp J, Suarez C, Whistler T, Rajeevan M: Integrated weighted gene co-expression network analysis with an application to chronic fatigue syndrome. BMC Syst Biol. 2008, 2: 95-10.1186\/1752-0509-2-95.","journal-title":"BMC Syst Biol"},{"key":"5222_CR14","doi-asserted-by":"publisher","first-page":"e1000117","DOI":"10.1371\/journal.pcbi.1000117","volume":"4","author":"S Horvath","year":"2008","unstructured":"Horvath S, Dong J: Geometric interpretation of gene coexpression network analysis. PLoS Comput Biol. 2008, 4: e1000117-10.1371\/journal.pcbi.1000117.","journal-title":"PLoS Comput Biol"},{"key":"5222_CR15","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1038\/nbt.1522","volume":"27","author":"IW Taylor","year":"2009","unstructured":"Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D: Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol. 2009, 27: 199-204. 10.1038\/nbt.1522.","journal-title":"Nat Biotechnol"},{"key":"5222_CR16","doi-asserted-by":"publisher","first-page":"e15","DOI":"10.1093\/nar\/gng015","volume":"31","author":"RA Irizarry","year":"2003","unstructured":"Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP: Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 2003, 31: e15-10.1093\/nar\/gng015.","journal-title":"Nucleic Acids Res"},{"key":"5222_CR17","doi-asserted-by":"publisher","first-page":"6745","DOI":"10.1073\/pnas.96.12.6745","volume":"96","author":"U Alon","year":"1999","unstructured":"Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D: Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci USA. 1999, 96: 6745-6750. 10.1073\/pnas.96.12.6745.","journal-title":"Proc Natl Acad Sci USA"},{"key":"5222_CR18","doi-asserted-by":"publisher","first-page":"615","DOI":"10.1073\/pnas.2536479100","volume":"101","author":"RO Stuart","year":"2004","unstructured":"Stuart RO, Wachsman W, Berry CC, Wang-Rodriguez J, Wasserman L, Klacansky I: In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proc Natl Acad Sci USA. 2004, 101: 615-620. 10.1073\/pnas.2536479100.","journal-title":"Proc Natl Acad Sci USA"},{"key":"5222_CR19","doi-asserted-by":"publisher","first-page":"361","DOI":"10.1038\/nm1556","volume":"13","author":"A Spira","year":"2007","unstructured":"Spira A, Beane JE, Shah V, Steiling K, Liu G, Schembri F: Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer. Nat Med. 2007, 13: 361-366. 10.1038\/nm1556.","journal-title":"Nat Med"},{"key":"5222_CR20","volume-title":"Correlation-sharing for detection of differential gene expression","author":"R Tibshirani","year":"2006","unstructured":"Tibshirani R, Wasserman L: Correlation-sharing for detection of differential gene expression. 2006, arXivmath.STmath\/0608061"},{"key":"5222_CR21","doi-asserted-by":"crossref","first-page":"Article17","DOI":"10.2202\/1544-6115.1128","volume":"4","author":"B Zhang","year":"2005","unstructured":"Zhang B, Horvath S: A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol. 2005, 4: Article17-","journal-title":"Stat Appl Genet Mol Biol"},{"key":"5222_CR22","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"V Tusher","year":"2001","unstructured":"Tusher V, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA. 2001, 98: 5116-5121. 10.1073\/pnas.091062498.","journal-title":"Proc Natl Acad Sci USA"},{"key":"5222_CR23","volume-title":"Principal Component Analysis","author":"IT Jolliffe","year":"2002","unstructured":"Jolliffe IT: Principal Component Analysis. 2002, New York: Springer"},{"key":"5222_CR24","doi-asserted-by":"publisher","first-page":"948","DOI":"10.1002\/prot.21071","volume":"64","author":"Z Lubovac","year":"2006","unstructured":"Lubovac Z, Gamalielsson J, Olsson B: Combining functional and topological properties to identify core modules in protein interaction networks. Proteins. 2006, 64: 948-959. 10.1002\/prot.21071.","journal-title":"Proteins"},{"key":"5222_CR25","doi-asserted-by":"publisher","first-page":"1623","DOI":"10.1093\/bioinformatics\/btl145","volume":"22","author":"HN Chua","year":"2006","unstructured":"Chua HN, Sung WK, Wong L: Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics. 2006, 22: 1623-1630. 10.1093\/bioinformatics\/btl145.","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-S10-S17.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-13-S10-S17\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-S10-S17.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,7,10]],"date-time":"2020-07-10T03:33:00Z","timestamp":1594351980000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-13-S10-S17"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,6]]},"references-count":25,"journal-issue":{"issue":"S10","published-print":{"date-parts":[[2012,6]]}},"alternative-id":["5222"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-13-s10-s17","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,6]]},"article-number":"S17"}}