{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,26]],"date-time":"2023-01-26T05:55:00Z","timestamp":1674712500929},"reference-count":32,"publisher":"Springer Science and Business Media LLC","issue":"S12","license":[{"start":{"date-parts":[[2012,7,1]],"date-time":"2012-07-01T00:00:00Z","timestamp":1341100800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2012,7]]},"DOI":"10.1186\/1471-2105-13-s12-a1","type":"journal-article","created":{"date-parts":[[2012,12,5]],"date-time":"2012-12-05T22:20:06Z","timestamp":1354746006000},"source":"Crossref","is-referenced-by-count":1,"title":["Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012"],"prefix":"10.1186","volume":"13","author":[{"given":"Eric C","family":"Rouchka","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert M","family":"Flight","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hunter NB","family":"Moseley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2012,7,31]]},"reference":[{"key":"5245_CR1","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1109\/BIBMW.2011.6112377","volume-title":"Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on: 12-15 Nov. 2011","author":"N Moore","year":"2011","unstructured":"Moore N, Jaromczyk JW: Finding a longest open reading frame of an alternatively spliced gene. Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on: 12\u201315 Nov. 2011 2011, 215\u2013222."},{"issue":"4","key":"5245_CR2","doi-asserted-by":"publisher","first-page":"2382","DOI":"10.1128\/JVI.06870-11","volume":"86","author":"GF Hatfull","year":"2012","unstructured":"Hatfull GF: Complete genome sequences of 138 mycobacteriophages. Journal of virology 2012, 86(4):2382\u20132384. 10.1128\/JVI.06870-11","journal-title":"Journal of virology"},{"issue":"7356","key":"5245_CR3","doi-asserted-by":"publisher","first-page":"348","DOI":"10.1038\/nature10242","volume":"475","author":"JM Rothberg","year":"2011","unstructured":"Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, et al.: An integrated semiconductor device enabling non-optical genome sequencing. Nature 2011, 475(7356):348\u2013352. 10.1038\/nature10242","journal-title":"Nature"},{"issue":"7","key":"5245_CR4","doi-asserted-by":"publisher","first-page":"e22751","DOI":"10.1371\/journal.pone.0022751","volume":"6","author":"A Mellmann","year":"2011","unstructured":"Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, Prior K, Szczepanowski R, Ji Y, Zhang W, et al.: Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PloS one 2011, 6(7):e22751. 10.1371\/journal.pone.0022751","journal-title":"PloS one"},{"issue":"7146","key":"5245_CR5","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1038\/nature05874","volume":"447","author":"E Birney","year":"2007","unstructured":"Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, et al.: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447(7146):799\u2013816. 10.1038\/nature05874","journal-title":"Nature"},{"issue":"11","key":"5245_CR6","doi-asserted-by":"publisher","first-page":"R124","DOI":"10.1186\/gb-2009-10-11-r124","volume":"10","author":"AC Marques","year":"2009","unstructured":"Marques AC, Ponting CP: Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness. Genome biology 2009, 10(11):R124. 10.1186\/gb-2009-10-11-r124","journal-title":"Genome biology"},{"issue":"10","key":"5245_CR7","doi-asserted-by":"publisher","first-page":"1335","DOI":"10.1101\/gr.108795.110","volume":"20","author":"S Meader","year":"2010","unstructured":"Meader S, Ponting CP, Lunter G: Massive turnover of functional sequence in human and other mammalian genomes. Genome research 2010, 20(10):1335\u20131343. 10.1101\/gr.108795.110","journal-title":"Genome research"},{"issue":"4","key":"5245_CR8","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1016\/j.cell.2009.02.006","volume":"136","author":"CP Ponting","year":"2009","unstructured":"Ponting CP, Oliver PL, Reik W: Evolution and functions of long noncoding RNAs. Cell 2009, 136(4):629\u2013641. 10.1016\/j.cell.2009.02.006","journal-title":"Cell"},{"issue":"7289","key":"5245_CR9","doi-asserted-by":"publisher","first-page":"757","DOI":"10.1038\/nature08819","volume":"464","author":"WC Warren","year":"2010","unstructured":"Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, et al.: The genome of a songbird. Nature 2010, 464(7289):757\u2013762. 10.1038\/nature08819","journal-title":"Nature"},{"issue":"11","key":"5245_CR10","doi-asserted-by":"publisher","first-page":"1769","DOI":"10.1101\/gr.116814.110","volume":"21","author":"CP Ponting","year":"2011","unstructured":"Ponting CP, Hardison RC: What fraction of the human genome is functional? Genome research 2011, 21(11):1769\u20131776. 10.1101\/gr.116814.110","journal-title":"Genome research"},{"issue":"12","key":"5245_CR11","doi-asserted-by":"publisher","first-page":"995","DOI":"10.1038\/nmeth.1529","volume":"7","author":"JG Underwood","year":"2010","unstructured":"Underwood JG, Uzilov AV, Katzman S, Onodera CS, Mainzer JE, Mathews DH, Lowe TM, Salama SR, Haussler D: FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. Nature methods 2010, 7(12):995\u20131001. 10.1038\/nmeth.1529","journal-title":"Nature methods"},{"issue":"3","key":"5245_CR12","doi-asserted-by":"publisher","first-page":"402","DOI":"10.1261\/rna.031385.111","volume":"18","author":"DL Bernick","year":"2012","unstructured":"Bernick DL, Dennis PP, Hochsmann M, Lowe TM: Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features. RNA 2012, 18(3):402\u2013411. 10.1261\/rna.031385.111","journal-title":"RNA"},{"issue":"4","key":"5245_CR13","doi-asserted-by":"publisher","first-page":"R38","DOI":"10.1186\/gb-2011-12-4-r38","volume":"12","author":"PP Chan","year":"2011","unstructured":"Chan PP, Cozen AE, Lowe TM: Discovery of permuted and recently split transfer RNAs in Archaea. Genome biology 2011, 12(4):R38. 10.1186\/gb-2011-12-4-r38","journal-title":"Genome biology"},{"key":"5245_CR14","volume-title":"The Journal of biological chemistry","author":"SM Ochs","year":"2012","unstructured":"Ochs SM, Thumann S, Richau R, Weirauch MT, Lowe TM, Thomm M, Hausner W: Activation of archaeal transcription mediated by recruitment of transcription factor B. The Journal of biological chemistry 2012."},{"issue":"Database issue","key":"5245_CR15","doi-asserted-by":"publisher","first-page":"D646","DOI":"10.1093\/nar\/gkr990","volume":"40","author":"PP Chan","year":"2012","unstructured":"Chan PP, Holmes AD, Smith AM, Tran D, Lowe TM: The UCSC Archaeal Genome Browser: 2012 update. Nucleic acids research 2012, 40(Database issue):D646\u2013652.","journal-title":"Nucleic acids research"},{"issue":"Database issue","key":"5245_CR16","doi-asserted-by":"publisher","first-page":"D407","DOI":"10.1093\/nar\/gkj134","volume":"34","author":"KL Schneider","year":"2006","unstructured":"Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM: The UCSC Archaeal Genome Browser. Nucleic acids research 2006, 34(Database issue):D407\u2013410.","journal-title":"Nucleic acids research"},{"issue":"2","key":"5245_CR17","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1016\/j.jbi.2008.08.010","volume":"42","author":"PA Harris","year":"2009","unstructured":"Harris PA, Taylor R, Thielke R, Payne J, Gonzalez N, Conde JG: Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support. Journal of biomedical informatics 2009, 42(2):377\u2013381. 10.1016\/j.jbi.2008.08.010","journal-title":"Journal of biomedical informatics"},{"issue":"1","key":"5245_CR18","doi-asserted-by":"publisher","first-page":"104","DOI":"10.1016\/j.jbi.2009.08.006","volume":"43","author":"EV Bernstam","year":"2010","unstructured":"Bernstam EV, Smith JW, Johnson TR: What is biomedical informatics? Journal of biomedical informatics 2010, 43(1):104\u2013110. 10.1016\/j.jbi.2009.08.006","journal-title":"Journal of biomedical informatics"},{"issue":"3","key":"5245_CR19","doi-asserted-by":"publisher","first-page":"224","DOI":"10.1038\/nrg2857-c1","volume":"12","author":"O Trelles","year":"2011","unstructured":"Trelles O, Prins P, Snir M, Jansen RC: Big data, but are we ready? Nature reviews Genetics 2011, 12(3):224.","journal-title":"Nature reviews Genetics"},{"issue":"7377","key":"5245_CR20","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1038\/nature10576","volume":"480","author":"R Mackelprang","year":"2011","unstructured":"Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK: Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 2011, 480(7377):368\u2013371. 10.1038\/nature10576","journal-title":"Nature"},{"issue":"3","key":"5245_CR21","doi-asserted-by":"publisher","first-page":"243","DOI":"10.4056\/sigs.1433550","volume":"3","author":"JA Gilbert","year":"2010","unstructured":"Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, et al.: Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in genomic sciences 2010, 3(3):243\u2013248. 10.4056\/sigs.1433550","journal-title":"Standards in genomic sciences"},{"issue":"4","key":"5245_CR22","doi-asserted-by":"publisher","first-page":"631","DOI":"10.1016\/j.yhbeh.2012.02.016","volume":"61","author":"LS Huffman","year":"2012","unstructured":"Huffman LS, Mitchell MM, O'Connell LA, Hofmann HA: Rising StARs: behavioral, hormonal, and molecular responses to social challenge and opportunity. Hormones and behavior 2012, 61(4):631\u2013641. 10.1016\/j.yhbeh.2012.02.016","journal-title":"Hormones and behavior"},{"issue":"3","key":"5245_CR23","doi-asserted-by":"publisher","first-page":"320","DOI":"10.1016\/j.yfrne.2010.12.004","volume":"32","author":"LA O'Connell","year":"2011","unstructured":"O'Connell LA, Hofmann HA: Genes, hormones, and circuits: an integrative approach to study the evolution of social behavior. Frontiers in neuroendocrinology 2011, 32(3):320\u2013335. 10.1016\/j.yfrne.2010.12.004","journal-title":"Frontiers in neuroendocrinology"},{"issue":"4","key":"5245_CR24","doi-asserted-by":"publisher","first-page":"496","DOI":"10.1016\/j.yhbeh.2012.01.006","volume":"61","author":"SC Renn","year":"2012","unstructured":"Renn SC, Fraser EJ, Aubin-Horth N, Trainor BC, Hofmann HA: Females of an African cichlid fish display male-typical social dominance behavior and elevated androgens in the absence of males. Hormones and behavior 2012, 61(4):496\u2013503. 10.1016\/j.yhbeh.2012.01.006","journal-title":"Hormones and behavior"},{"issue":"4","key":"5245_CR25","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1016\/j.yhbeh.2012.01.011","volume":"61","author":"PD Dijkstra","year":"2012","unstructured":"Dijkstra PD, Verzijden MN, Groothuis TG, Hofmann HA: Divergent hormonal responses to social competition in closely related species of haplochromine cichlid fish. Hormones and behavior 2012, 61(4):518\u2013526. 10.1016\/j.yhbeh.2012.01.011","journal-title":"Hormones and behavior"},{"issue":"2","key":"5245_CR26","doi-asserted-by":"publisher","first-page":"489","DOI":"10.1016\/j.physbeh.2011.08.029","volume":"105","author":"PD Dijkstra","year":"2012","unstructured":"Dijkstra PD, Schaafsma SM, Hofmann HA, Groothuis TG: 'Winner effect' without winning: unresolved social conflicts increase the probability of winning a subsequent contest in a cichlid fish. Physiology & behavior 2012, 105(2):489\u2013492. 10.1016\/j.physbeh.2011.08.029","journal-title":"Physiology & behavior"},{"issue":"1","key":"5245_CR27","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1152\/jn.01126.2010","volume":"106","author":"KW Whitaker","year":"2011","unstructured":"Whitaker KW, Neumeister H, Huffman LS, Kidd CE, Preuss T, Hofmann HA: Serotonergic modulation of startle-escape plasticity in an African cichlid fish: a single-cell molecular and physiological analysis of a vital neural circuit. Journal of neurophysiology 2011, 106(1):127\u2013137. 10.1152\/jn.01126.2010","journal-title":"Journal of neurophysiology"},{"issue":"3-4","key":"5245_CR28","doi-asserted-by":"publisher","first-page":"296","DOI":"10.1016\/j.physbeh.2010.11.022","volume":"102","author":"RG Oldfield","year":"2011","unstructured":"Oldfield RG, Hofmann HA: Neuropeptide regulation of social behavior in a monogamous cichlid fish. Physiology & behavior 2011, 102(3\u20134):296\u2013303. 10.1016\/j.physbeh.2010.11.022","journal-title":"Physiology & behavior"},{"issue":"11","key":"5245_CR29","doi-asserted-by":"publisher","first-page":"5119","DOI":"10.1210\/en.2006-0511","volume":"147","author":"BC Trainor","year":"2006","unstructured":"Trainor BC, Hofmann HA: Somatostatin regulates aggressive behavior in an African cichlid fish. Endocrinology 2006, 147(11):5119\u20135125. 10.1210\/en.2006-0511","journal-title":"Endocrinology"},{"issue":"2","key":"5245_CR30","doi-asserted-by":"publisher","first-page":"338","DOI":"10.1007\/s13311-012-0111-3","volume":"9","author":"JA Bubier","year":"2012","unstructured":"Bubier JA, Chesler EJ: Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics 2012, 9(2):338\u2013348.","journal-title":"Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics"},{"issue":"Database issue","key":"5245_CR31","doi-asserted-by":"publisher","first-page":"D1067","DOI":"10.1093\/nar\/gkr968","volume":"40","author":"EJ Baker","year":"2012","unstructured":"Baker EJ, Jay JJ, Bubier JA, Langston MA, Chesler EJ: GeneWeaver: a web-based system for integrative functional genomics. Nucleic acids research 2012, 40(Database issue):D1067\u20131076.","journal-title":"Nucleic acids research"},{"issue":"6","key":"5245_CR32","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1016\/j.ygeno.2009.08.016","volume":"94","author":"EJ Baker","year":"2009","unstructured":"Baker EJ, Jay JJ, Philip VM, Zhang Y, Li Z, Kirova R, Langston MA, Chesler EJ: Ontological Discovery Environment: a system for integrating gene-phenotype associations. Genomics 2009, 94(6):377\u2013387. 10.1016\/j.ygeno.2009.08.016","journal-title":"Genomics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-S12-A1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-13-S12-A1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-S12-A1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T10:07:25Z","timestamp":1548151645000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-13-S12-A1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,7]]},"references-count":32,"journal-issue":{"issue":"S12","published-print":{"date-parts":[[2012,7]]}},"alternative-id":["5245"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-13-s12-a1","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,7]]},"article-number":"A1"}}