{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T23:32:47Z","timestamp":1773271967281,"version":"3.50.1"},"reference-count":24,"publisher":"Springer Science and Business Media LLC","issue":"S17","license":[{"start":{"date-parts":[[2012,12,1]],"date-time":"2012-12-01T00:00:00Z","timestamp":1354320000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2012,12]]},"DOI":"10.1186\/1471-2105-13-s17-s13","type":"journal-article","created":{"date-parts":[[2012,12,13]],"date-time":"2012-12-13T11:15:54Z","timestamp":1355397354000},"source":"Crossref","is-referenced-by-count":9,"title":["Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing"],"prefix":"10.1186","volume":"13","author":[{"given":"Emily Chia-Yu","family":"Su","sequence":"first","affiliation":[]},{"given":"Jia-Ming","family":"Chang","sequence":"additional","affiliation":[]},{"given":"Cheng-Wei","family":"Cheng","sequence":"additional","affiliation":[]},{"given":"Ting-Yi","family":"Sung","sequence":"additional","affiliation":[]},{"given":"Wen-Lian","family":"Hsu","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2012,12,13]]},"reference":[{"issue":"4","key":"5477_CR1","doi-asserted-by":"publisher","first-page":"570","DOI":"10.1128\/MMBR.65.4.570-594.2001","volume":"65","author":"IG Macara","year":"2001","unstructured":"Macara IG: Transport into and out of the nucleus. Microbiol Mol Biol Rev. 2001, 65 (4): 570-594. 10.1128\/MMBR.65.4.570-594.2001. table of contents","journal-title":"Microbiol Mol Biol Rev"},{"issue":"5","key":"5477_CR2","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1093\/embo-reports\/kvd092","volume":"1","author":"M Cokol","year":"2000","unstructured":"Cokol M, Nair R, Rost B: Finding nuclear localization signals. EMBO Rep. 2000, 1 (5): 411-415. 10.1093\/embo-reports\/kvd092.","journal-title":"EMBO Rep"},{"issue":"9","key":"5477_CR3","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1093\/bioinformatics\/btm066","volume":"23","author":"M Brameier","year":"2007","unstructured":"Brameier M, Krings A, MacCallum RM: NucPred--predicting nuclear localization of proteins. Bioinformatics. 2007, 23 (9): 1159-1160. 10.1093\/bioinformatics\/btm066.","journal-title":"Bioinformatics"},{"issue":"4","key":"5477_CR4","doi-asserted-by":"publisher","first-page":"1402","DOI":"10.1021\/pr060564n","volume":"6","author":"J Hawkins","year":"2007","unstructured":"Hawkins J, Davis L, Boden M: Predicting nuclear localization. J Proteome Res. 2007, 6 (4): 1402-1409. 10.1021\/pr060564n.","journal-title":"J Proteome Res"},{"key":"5477_CR5","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1186\/1471-2105-10-22","volume":"10","author":"M Kumar","year":"2009","unstructured":"Kumar M, Raghava GPS: Prediction of nuclear proteins using SVM and HMM models. BMC Bioinformatics. 2009, 10: 22-10.1186\/1471-2105-10-22.","journal-title":"BMC Bioinformatics"},{"issue":"11","key":"5477_CR6","doi-asserted-by":"publisher","first-page":"1785","DOI":"10.1093\/bioinformatics\/bth171","volume":"20","author":"C Guda","year":"2004","unstructured":"Guda C, Fahy E, Subramaniam S: MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics. 2004, 20 (11): 1785-1794. 10.1093\/bioinformatics\/bth171.","journal-title":"Bioinformatics"},{"key":"5477_CR7","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1186\/1471-2105-10-202","volume":"10","author":"AN Nguyen Ba","year":"2009","unstructured":"Nguyen Ba AN, Pogoutse A, Provart N, Moses AM: NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics. 2009, 10: 202-10.1186\/1471-2105-10-202.","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"5477_CR8","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1093\/protein\/gzh062","volume":"17","author":"T la Cour","year":"2004","unstructured":"la Cour T, Kiemer L, Molgaard A, Gupta R, Skriver K, Brunak S: Analysis and prediction of leucine-rich nuclear export signals. Protein Eng Des Sel. 2004, 17 (6): 527-536. 10.1093\/protein\/gzh062.","journal-title":"Protein Eng Des Sel"},{"key":"5477_CR9","doi-asserted-by":"publisher","first-page":"317","DOI":"10.1186\/1471-2105-12-317","volume":"12","author":"MS Scott","year":"2011","unstructured":"Scott MS, Troshin PV, Barton GJ: NoD: a nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinformatics. 2011, 12: 317-10.1186\/1471-2105-12-317.","journal-title":"BMC Bioinformatics"},{"issue":"2","key":"5477_CR10","doi-asserted-by":"publisher","first-page":"573","DOI":"10.1016\/j.biosystems.2007.01.001","volume":"90","author":"WL Huang","year":"2007","unstructured":"Huang WL, Tung CW, Huang HL, Hwang SF, Ho SY: ProLoc: prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features. Biosystems. 2007, 90 (2): 573-581. 10.1016\/j.biosystems.2007.01.001.","journal-title":"Biosystems"},{"key":"5477_CR11","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1186\/1471-2105-6-291","volume":"6","author":"Z Lei","year":"2005","unstructured":"Lei Z, Dai Y: An SVM-based system for predicting protein subnuclear localizations. BMC Bioinformatics. 2005, 6: 291-10.1186\/1471-2105-6-291.","journal-title":"BMC Bioinformatics"},{"key":"5477_CR12","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1186\/1471-2105-7-491","volume":"7","author":"Z Lei","year":"2006","unstructured":"Lei Z, Dai Y: Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction. BMC Bioinformatics. 2006, 7: 491-10.1186\/1471-2105-7-491.","journal-title":"BMC Bioinformatics"},{"issue":"11","key":"5477_CR13","doi-asserted-by":"publisher","first-page":"561","DOI":"10.1093\/protein\/gzm057","volume":"20","author":"HB Shen","year":"2007","unstructured":"Shen HB, Chou KC: Nuc-PLoc: a new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM. Protein Eng Des Sel. 2007, 20 (11): 561-567. 10.1093\/protein\/gzm057.","journal-title":"Protein Eng Des Sel"},{"key":"5477_CR14","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1186\/1471-2105-8-330","volume":"8","author":"EC Su","year":"2007","unstructured":"Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL: Protein subcellular localization prediction based on compartment-specific features and structure conservation. BMC Bioinformatics. 2007, 8: 330-10.1186\/1471-2105-8-330.","journal-title":"BMC Bioinformatics"},{"issue":"5","key":"5477_CR15","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1016\/S0898-6568(00)00077-2","volume":"12","author":"D Christophe","year":"2000","unstructured":"Christophe D, Christophe-Hobertus C, Pichon B: Nuclear targeting of proteins: how many different signals?. Cell Signal. 2000, 12 (5): 337-341. 10.1016\/S0898-6568(00)00077-2.","journal-title":"Cell Signal"},{"issue":"2","key":"5477_CR16","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1002\/prot.21944","volume":"72","author":"JM Chang","year":"2008","unstructured":"Chang JM, Su EC, Lo A, Chiu HS, Sung TY, Hsu WL: PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis. Proteins. 2008, 72 (2): 693-710. 10.1002\/prot.21944.","journal-title":"Proteins"},{"issue":"1-2","key":"5477_CR17","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1023\/A:1007617005950","volume":"42","author":"T Hofmann","year":"2001","unstructured":"Hofmann T: Unsupervised learning by probabilistic latent semantic analysis. Mach Learn. 2001, 42 (1-2): 177-196.","journal-title":"Mach Learn"},{"issue":"Suppl 12","key":"5477_CR18","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2105-9-S12-S6","volume":"9","author":"CW Cheng","year":"2008","unstructured":"Cheng CW, Su EC, Hwang JK, Sung TY, Hsu WL: Predicting RNA-binding sites of proteins using support vector machines and evolutionary information. BMC Bioinformatics. 2008, 9 (Suppl 12): S6-10.1186\/1471-2105-9-S12-S6.","journal-title":"BMC Bioinformatics"},{"issue":"8","key":"5477_CR19","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1093\/bioinformatics\/17.8.721","volume":"17","author":"S Hua","year":"2001","unstructured":"Hua S, Sun Z: Support vector machine approach for protein subcellular localization prediction. Bioinformatics. 2001, 17 (8): 721-728. 10.1093\/bioinformatics\/17.8.721.","journal-title":"Bioinformatics"},{"issue":"5","key":"5477_CR20","doi-asserted-by":"publisher","first-page":"1402","DOI":"10.1110\/ps.03479604","volume":"13","author":"CS Yu","year":"2004","unstructured":"Yu CS, Lin CJ, Hwang JK: Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Sci. 2004, 13 (5): 1402-1406. 10.1110\/ps.03479604.","journal-title":"Protein Sci"},{"issue":"17","key":"5477_CR21","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"SF Altschul","year":"1997","unstructured":"Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. 1997, 25 (17): 3389-3402. 10.1093\/nar\/25.17.3389.","journal-title":"Nucleic Acids Research"},{"issue":"2","key":"5477_CR22","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1006\/jmbi.1999.3091","volume":"292","author":"DT Jones","year":"1999","unstructured":"Jones DT: Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol. 1999, 292 (2): 195-202. 10.1006\/jmbi.1999.3091.","journal-title":"J Mol Biol"},{"key":"5477_CR23","doi-asserted-by":"crossref","unstructured":"Chang CC, Lin CJ: LIBSVM: a library for support vector machines. ACM Transactions on Intelligent Systems and Technology. 2011, 2 (27):","DOI":"10.1145\/1961189.1961199"},{"key":"5477_CR24","first-page":"975","volume":"5","author":"TF Wu","year":"2004","unstructured":"Wu TF, Lin CJ, Weng RC: Probability estimates for multi-class classification by pairwise coupling. J Mach Learn Res. 2004, 5: 975-1005.","journal-title":"J Mach Learn Res"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-S17-S13.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-13-S17-S13\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-13-S17-S13.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T10:14:07Z","timestamp":1548152047000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-13-S17-S13"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,12]]},"references-count":24,"journal-issue":{"issue":"S17","published-print":{"date-parts":[[2012,12]]}},"alternative-id":["5477"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-13-s17-s13","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,12]]},"article-number":"S13"}}