{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T15:22:20Z","timestamp":1764688940429},"reference-count":34,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2013,6,3]],"date-time":"2013-06-03T00:00:00Z","timestamp":1370217600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2013,12]]},"DOI":"10.1186\/1471-2105-14-175","type":"journal-article","created":{"date-parts":[[2013,6,3]],"date-time":"2013-06-03T06:43:59Z","timestamp":1370241839000},"source":"Crossref","is-referenced-by-count":32,"title":["Wide coverage biomedical event extraction using multiple partially overlapping corpora"],"prefix":"10.1186","volume":"14","author":[{"given":"Makoto","family":"Miwa","sequence":"first","affiliation":[]},{"given":"Sampo","family":"Pyysalo","sequence":"additional","affiliation":[]},{"given":"Tomoko","family":"Ohta","sequence":"additional","affiliation":[]},{"given":"Sophia","family":"Ananiadou","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2013,6,3]]},"reference":[{"issue":"7","key":"5918_CR1","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1016\/j.tibtech.2010.04.005","volume":"28","author":"S Ananiadou","year":"2010","unstructured":"Ananiadou S, Pyysalo S, Tsujii J, Kell DB: Event extraction for systems biology by text mining the literature. Trends Biotechnol. 2010, 28 (7): 381-390. 10.1016\/j.tibtech.2010.04.005.","journal-title":"Trends Biotechnol"},{"issue":"4","key":"5918_CR2","doi-asserted-by":"publisher","first-page":"513","DOI":"10.1111\/j.1467-8640.2011.00398.x","volume":"27","author":"JD Kim","year":"2011","unstructured":"Kim JD, Ohta T, Pyysalo S, Kano Y, Tsujii J: Extracting bio-molecular events from literature - the BioNLP\u201909 shared task. Comput Intell. 2011, 27 (4): 513-540. 10.1111\/j.1467-8640.2011.00398.x.","journal-title":"Comput Intell"},{"issue":"Suppl 11","key":"5918_CR3","doi-asserted-by":"publisher","first-page":"S1","DOI":"10.1186\/1471-2105-13-S11-S1","volume":"13","author":"JD Kim","year":"2012","unstructured":"Kim JD, Nguyen N, Wang Y, Tsujii J, Takagi T, Yonezawa A: The genia event and protein coreference tasks of the BioNLP shared task 2011. BMC Bioinformatics. 2012, 13 (Suppl 11): S1-10.1186\/1471-2105-13-S11-S1.","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 11","key":"5918_CR4","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/1471-2105-13-S11-S2","volume":"13","author":"S Pyysalo","year":"2012","unstructured":"Pyysalo S, Ohta T, Rak R, Sullivan D, Mao C, Wang C, Sobral B, Tsujii J, Ananiadou S: Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinformatics. 2012, 13 (Suppl 11): S2-10.1186\/1471-2105-13-S11-S2.","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 5","key":"5918_CR5","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/2041-1480-2-S5-S2","volume":"2","author":"T Ohta","year":"2011","unstructured":"Ohta T, Pyysalo S, Miwa M, Tsujii J: Event extraction for DNA methylation. J Biomed Semantics. 2011, 2 (Suppl 5): S2-10.1186\/2041-1480-2-S5-S2.","journal-title":"J Biomed Semantics"},{"key":"5918_CR6","first-page":"114","volume-title":"Proceedings of BioNLP\u201911","author":"S Pyysalo","year":"2011","unstructured":"Pyysalo S, Ohta T, Miwa M, Tsujii J: Towards exhaustive event extraction for protein modifications. Proceedings of BioNLP\u201911. 2011, Portland: ACL, 114-123."},{"key":"5918_CR7","first-page":"105","volume-title":"Proceedings of BioNLP\u201911","author":"T Ohta","year":"2011","unstructured":"Ohta T, Pyysalo S, Tsujii J: From pathways to Biomolecular events: opportunities and challenges. Proceedings of BioNLP\u201911. 2011, Portland: ACL, 105-113."},{"issue":"Suppl 11","key":"5918_CR8","doi-asserted-by":"publisher","first-page":"S4","DOI":"10.1186\/1471-2105-13-S11-S4","volume":"13","author":"J Bj\u00f6rne","year":"2012","unstructured":"Bj\u00f6rne J, Ginter F, Salakoski T: University of Turku in the BioNLP\u201911 shared task. BMC Bioinformatics. 2012, 13 (Suppl 11): S4-10.1186\/1471-2105-13-S11-S4.","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"5918_CR9","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1093\/bioinformatics\/btp071","volume":"25","author":"J Wermter","year":"2009","unstructured":"Wermter J, Tomanek K, Hahn U: High-performance gene name normalization with GeNo. Bioinformatics. 2009, 25 (6): 815-821. 10.1093\/bioinformatics\/btp071.","journal-title":"Bioinformatics"},{"key":"5918_CR10","first-page":"77","volume-title":"Proceedings of SMBM\u201908. Turku:","author":"SV Landeghem","year":"2008","unstructured":"Landeghem SV, Saeys Y, Baets BD, de Peer YV: Extracting protein-protein interactions from text using rich feature vectors and feature selection. Proceedings of SMBM\u201908. Turku:. 2008, Turku Centre for Computer Science (TUCS), 77-84."},{"issue":"7","key":"5918_CR11","doi-asserted-by":"publisher","first-page":"e1000837","DOI":"10.1371\/journal.pcbi.1000837","volume":"6","author":"D Tikk","year":"2010","unstructured":"Tikk D, Thomas P, Palaga P, Hakenberg J, Leser U: A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature. PLoS Comput Biol. 2010, 6 (7): e1000837-10.1371\/journal.pcbi.1000837.","journal-title":"PLoS Comput Biol"},{"key":"5918_CR12","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1186\/1471-2105-10-403","volume":"10","author":"Y Wang","year":"2009","unstructured":"Wang Y, Kim JD, Saetre R, Pyysalo S, Tsujii J: Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics. 2009, 10: 403-10.1186\/1471-2105-10-403.","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 3","key":"5918_CR13","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2105-9-S3-S6","volume":"9","author":"S Pyysalo","year":"2008","unstructured":"Pyysalo S, Airola A, Heimonen J, Bj\u00f6rne J, Ginter F, Salakoski T: Comparative analysis of five protein-protein interaction corpora. BMC Bioinformatics. 2008, 9 (Suppl 3): S6-10.1186\/1471-2105-9-S3-S6.","journal-title":"BMC Bioinformatics"},{"key":"5918_CR14","first-page":"101","volume":"26","author":"H Daum\u00e9 III","year":"2006","unstructured":"Daum\u00e9 III H, Marcu D: Domain adaptation for statistical classifiers. J Artif Int Res. 2006, 26: 101-126.","journal-title":"J Artif Int Res"},{"key":"5918_CR15","first-page":"41","volume-title":"Proceedings of ICML-1993","author":"R Caruana","year":"1993","unstructured":"Caruana R: Multitask learning: a knowledge-based source of inductive bias. Proceedings of ICML-1993. 1993, Amherst, MA, USA: Morgan Kaufmann, 41-48."},{"issue":"10","key":"5918_CR16","doi-asserted-by":"publisher","first-page":"1345","DOI":"10.1109\/TKDE.2009.191","volume":"22","author":"SJ Pan","year":"2010","unstructured":"Pan SJ, Yang Q: A survey on transfer learning. IEEE Trans Knowl Data Eng. 2010, 22 (10): 1345-1359.","journal-title":"IEEE Trans Knowl Data Eng"},{"key":"5918_CR17","first-page":"1","volume-title":"Proceedings of EMNLP\u201911","author":"S Riedel","year":"2011","unstructured":"Riedel S, McCallum A: Fast and robust joint models for biomedical event extraction. Proceedings of EMNLP\u201911. 2011, Edinburgh: ACL, 1-12."},{"key":"5918_CR18","first-page":"1626","volume-title":"Proceedings of ACL-HLT\u201911","author":"D McClosky","year":"2011","unstructured":"McClosky D, Surdeanu M, Manning C: Event extraction as dependency parsing. Proceedings of ACL-HLT\u201911. 2011, Portland: ACL, 1626-1635."},{"key":"5918_CR19","first-page":"130","volume-title":"Proceedings of BioNLP Shared Task 2011 Workshop","author":"L R McGrath","year":"2011","unstructured":"R McGrath L, Domico K, D Corley C, Webb-Robertson BJ: Complex biological event extraction from full text using signatures of linguistic and semantic features. Proceedings of BioNLP Shared Task 2011 Workshop. 2011, Portland: ACL, 130-137."},{"issue":"Suppl 11","key":"5918_CR20","doi-asserted-by":"publisher","first-page":"S5","DOI":"10.1186\/1471-2105-13-S11-S5","volume":"13","author":"A Vlachos","year":"2012","unstructured":"Vlachos A, Craven M: Biomedical event extraction from abstracts and full papers using search-based structured prediction. BMC Bioinformatics. 2012, 13 (Suppl 11): S5-10.1186\/1471-2105-13-S11-S5.","journal-title":"BMC Bioinformatics"},{"issue":"13","key":"5918_CR21","doi-asserted-by":"publisher","first-page":"1759","DOI":"10.1093\/bioinformatics\/bts237","volume":"28","author":"M Miwa","year":"2012","unstructured":"Miwa M, Thompson P, Ananiadou S: Boosting automatic event extraction from the literature using domain adaptation and coreference resolution. Bioinformatics. 2012, 28 (13): 1759-1765. 10.1093\/bioinformatics\/bts237.","journal-title":"Bioinformatics"},{"key":"5918_CR22","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1016\/S0893-6080(05)80023-1","volume":"5","author":"DH Wolpert","year":"1992","unstructured":"Wolpert DH: Stacked generalization. Neural Netw. 1992, 5: 241-259. 10.1016\/S0893-6080(05)80023-1.","journal-title":"Neural Netw"},{"key":"5918_CR23","first-page":"256","volume-title":"Proceedings of ACL\u201907","author":"H Daum\u00e9 III","year":"2007","unstructured":"Daum\u00e9 III H: Frustratingly easy domain adaptation. Proceedings of ACL\u201907. 2007, Prague: ACL, 256-263."},{"key":"5918_CR24","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1186\/1471-2105-9-10","volume":"9","author":"JD Kim","year":"2008","unstructured":"Kim JD, Ohta T, Tsujii J: Corpus annotation for mining biomedical events from literature. BMC Bioinformatics. 2008, 9: 10-10.1186\/1471-2105-9-10.","journal-title":"BMC Bioinformatics"},{"key":"5918_CR25","doi-asserted-by":"publisher","first-page":"453","DOI":"10.1038\/msb.2010.108","volume":"6","author":"E Caron","year":"2010","unstructured":"Caron E, Ghosh S, Matsuoka Y, Ashton-Beaucage D, Therrien M, Lemieux S, Perreault C, Roux P, Kitano H: A comprehensive map of the mTOR signaling network. Mol Syst Biol. 2010, 6: 453-","journal-title":"Mol Syst Biol"},{"issue":"18","key":"5918_CR26","doi-asserted-by":"publisher","first-page":"i575\u2014i581","DOI":"10.1093\/bioinformatics\/bts407","volume":"28","author":"S Pyysalo","year":"2012","unstructured":"Pyysalo S, Ohta T, Miwa M, Cho HC, Tsujii J, Ananiadou S: Event extraction across multiple levels of biological organization. Bioinformatics. 2012, 28 (18): i575\u2014i581-","journal-title":"Bioinformatics"},{"key":"5918_CR27","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. Nat Genet. 2000, 25: 25-29. 10.1038\/75556.","journal-title":"Nat Genet"},{"key":"5918_CR28","doi-asserted-by":"publisher","first-page":"522","DOI":"10.3115\/1687878.1687952","volume-title":"Proceedings of ACL-IJCNLP\u201909","author":"W Jiang","year":"2009","unstructured":"Jiang W, Huang L, Liu Q: Automatic adaptation of annotation standards: Chinese word segmentation and POS tagging - a case study. Proceedings of ACL-IJCNLP\u201909. 2009, Singapore: ACL, 522-530."},{"key":"5918_CR29","first-page":"155","volume-title":"Proceedings of BioNLP Shared Task 2011 Workshop","author":"C Quirk","year":"2011","unstructured":"Quirk C, Choudhury P, Gamon M, Vanderwende L: MSR-NLP Entry in BioNLP Shared Task 2011. Proceedings of BioNLP Shared Task 2011 Workshop. 2011, Portland: ACL, 155-163."},{"key":"5918_CR30","doi-asserted-by":"publisher","first-page":"393","DOI":"10.1186\/1471-2105-12-393","volume":"12","author":"P Thompson","year":"2011","unstructured":"Thompson P, Nawaz R, McNaught J, Ananiadou S: Enriching a biomedical event corpus with meta-knowledge annotation. BMC Bioinformatics. 2011, 12: 393-10.1186\/1471-2105-12-393.","journal-title":"BMC Bioinformatics"},{"key":"5918_CR31","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1186\/1471-2105-13-108","volume":"13","author":"M Miwa","year":"2012","unstructured":"Miwa M, Thompson P, McNaught J, Kell D, Ananiadou S: Extracting semantically enriched events from biomedical literature. BMC Bioinformatics. 2012, 13: 108-10.1186\/1471-2105-13-108.","journal-title":"BMC Bioinformatics"},{"key":"5918_CR32","volume-title":"Computer-Intensive Methods for Testing Hypotheses: An Introduction","author":"EW Noreen","year":"1989","unstructured":"Noreen EW: Computer-Intensive Methods for Testing Hypotheses: An Introduction. 1989, New York: Wiley-Interscience"},{"issue":"Suppl 11","key":"5918_CR33","doi-asserted-by":"publisher","first-page":"S9","DOI":"10.1186\/1471-2105-13-S11-S9","volume":"13","author":"D McClosky","year":"2012","unstructured":"McClosky D, Riedel S, Surdeanu M, McCallum A, Manning C: Combining joint models for biomedical event extraction. BMC Bioinformatics. 2012, 13 (Suppl 11): S9-10.1186\/1471-2105-13-S11-S9.","journal-title":"BMC Bioinformatics"},{"key":"5918_CR34","unstructured":"EventMine. [\n                    http:\/\/www.nactem.ac.uk\/EventMine\/\n                    \n                  ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-175.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-14-175\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-175.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T05:36:33Z","timestamp":1548135393000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-14-175"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,6,3]]},"references-count":34,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,12]]}},"alternative-id":["5918"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-14-175","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,6,3]]},"article-number":"175"}}