{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,16]],"date-time":"2025-10-16T06:53:14Z","timestamp":1760597594323},"reference-count":53,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2013,6,18]],"date-time":"2013-06-18T00:00:00Z","timestamp":1371513600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2013,12]]},"DOI":"10.1186\/1471-2105-14-196","type":"journal-article","created":{"date-parts":[[2013,6,18]],"date-time":"2013-06-18T10:14:51Z","timestamp":1371550491000},"source":"Crossref","is-referenced-by-count":33,"title":["Incorporating time-delays in S-System model for reverse engineering genetic networks"],"prefix":"10.1186","volume":"14","author":[{"given":"Ahsan Raja","family":"Chowdhury","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Madhu","family":"Chetty","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nguyen Xuan","family":"Vinh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2013,6,18]]},"reference":[{"key":"6017_CR1","doi-asserted-by":"publisher","first-page":"770","DOI":"10.1038\/nrm2503","volume":"9","author":"G Karlebach","year":"2008","unstructured":"Karlebach G, Shamir R: Modelling and analysis of gene regulatory networks. Nat Rev Mol Cell Biol. 2008, 9: 770-780. 10.1038\/nrm2503.","journal-title":"Nat Rev Mol Cell Biol"},{"key":"6017_CR2","doi-asserted-by":"publisher","first-page":"6286","DOI":"10.1073\/pnas.0913357107","volume":"107","author":"D Marbach","year":"2010","unstructured":"Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, Stolovitzky G: Revealing strengths and weaknesses of methods for gene network inference. Proc Natl Acad Sci. 2010, 107: 6286-6291. 10.1073\/pnas.0913357107.","journal-title":"Proc Natl Acad Sci"},{"issue":"8","key":"6017_CR3","doi-asserted-by":"publisher","first-page":"796","DOI":"10.1038\/nmeth.2016","volume":"9","author":"D Marbach","year":"2012","unstructured":"Marbach D, Costello JC, Kuffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, Kellis M, Collins JJ, Stolovitzky G: Wisdom of crowds for robust gene network inference. Nat Methods. 2012, 9 (8): 796-804. 10.1038\/nmeth.2016.","journal-title":"Nat Methods"},{"key":"6017_CR4","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1089\/10665270252833208","volume":"9","author":"H de Jong","year":"2002","unstructured":"de Jong H: Modeling and simulation of genetic regulatory systems: a literature review. J Comput Biol. 2002, 9: 67-103. 10.1089\/10665270252833208.","journal-title":"J Comput Biol"},{"key":"6017_CR5","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2013\/897658","volume":"2013","author":"EO Voit","year":"2013","unstructured":"Voit EO: Biochemical systems theory: a review. ISRN Biomathematics. 2013, 2013: 1-53.","journal-title":"ISRN Biomathematics"},{"key":"6017_CR6","first-page":"415","volume":"5","author":"AJ Butte","year":"2000","unstructured":"Butte AJ, Kohane IS: Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac Symp Biocomput. 2000, 5: 415-426.","journal-title":"Pac Symp Biocomput"},{"issue":"Suppl 1","key":"6017_CR7","doi-asserted-by":"publisher","first-page":"S7","DOI":"10.1186\/1471-2105-7-S1-S7","volume":"7","author":"A Margolin","year":"2006","unstructured":"Margolin A, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Favera R, Califano A: ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics. 2006, 7 (Suppl 1): S7-10.1186\/1471-2105-7-S1-S7.","journal-title":"BMC Bioinformatics"},{"issue":"4","key":"6017_CR8","doi-asserted-by":"publisher","first-page":"382","DOI":"10.1038\/ng1532","volume":"37","author":"K Basso","year":"2005","unstructured":"Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A: Reverse engineering of regulatory networks in human B cells. Nat Genet. 2005, 37 (4): 382-390. 10.1038\/ng1532.","journal-title":"Nat Genet"},{"issue":"5629","key":"6017_CR9","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1126\/science.1081900","volume":"301","author":"TS Gardner","year":"2003","unstructured":"Gardner TS, di Bernardo D, Lorenz D, Collins JJ: Inferring genetic networks and identifying compound mode of action via expression profiling. Science. 2003, 301 (5629): 102-105. 10.1126\/science.1081900.","journal-title":"Science"},{"issue":"7","key":"6017_CR10","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1093\/bioinformatics\/btl003","volume":"22","author":"M Bansal","year":"2006","unstructured":"Bansal M, Gatta GD, di Bernardo D: Inference of gene regulatory networks and compound mode of action from time course gene expression profiles. Bioinformatics. 2006, 22 (7): 815-822. 10.1093\/bioinformatics\/btl003.","journal-title":"Bioinformatics"},{"issue":"10","key":"6017_CR11","doi-asserted-by":"publisher","first-page":"5944","DOI":"10.1073\/pnas.0933416100","volume":"100","author":"J Tegner","year":"2003","unstructured":"Tegner J, Yeung MKS, Hasty J, Collins JJ: Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling. Proc Natl Acad Sci. 2003, 100 (10): 5944-5949. 10.1073\/pnas.0933416100. [\n                    http:\/\/www.pnas.org\/content\/100\/10\/5944.abstract\n                    \n                  ]","journal-title":"Proc Natl Acad Sci"},{"key":"6017_CR12","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1016\/j.cell.2009.01.055","volume":"137","author":"I Cantone","year":"2009","unstructured":"Cantone I, Marucci L, Iorio F, Ricci MA, Belcastro V, Bansal M, Santini S, di Bernardo M, di Bernardo D, Cosma MP: A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. Cell. 2009, 137: 172-181. 10.1016\/j.cell.2009.01.055.","journal-title":"Cell"},{"issue":"4","key":"6017_CR13","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1016\/j.compbiolchem.2007.03.013","volume":"31","author":"S Kim","year":"2007","unstructured":"Kim S, Kim J, Cho KH: Inferring gene regulatory networks from temporal expression profiles under time-delay and noise. Comput Biol Chem. 2007, 31 (4): 239-245. 10.1016\/j.compbiolchem.2007.03.013.","journal-title":"Comput Biol Chem"},{"issue":"5","key":"6017_CR14","doi-asserted-by":"publisher","first-page":"643","DOI":"10.1093\/bioinformatics\/btg027","volume":"19","author":"S Kikuchi","year":"2003","unstructured":"Kikuchi S, Tominaga D, Arita M, Takahashi K, Tomita M: Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinformatics. 2003, 19 (5): 643-650. 10.1093\/bioinformatics\/btg027.","journal-title":"Bioinformatics"},{"issue":"7","key":"6017_CR15","doi-asserted-by":"publisher","first-page":"1154","DOI":"10.1093\/bioinformatics\/bti071","volume":"21","author":"S Kimura","year":"2005","unstructured":"Kimura S, Ide K, Kashihara A, Kano M, Hatakeyama M, Masui R, Nakagawa N, Yokoyama S, Kuramitsu S, Konagaya A: Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics. 2005, 21 (7): 1154-63. 10.1093\/bioinformatics\/bti071.","journal-title":"Bioinformatics"},{"key":"6017_CR16","doi-asserted-by":"publisher","first-page":"634","DOI":"10.1109\/TCBB.2007.1058","volume":"4","author":"N Noman","year":"2007","unstructured":"Noman N, Iba H: Inferring gene regulatory networks using differential evolution with local search heuristics. IEEE Trans Comput Biol Bioinform. 2007, 4: 634-647.","journal-title":"IEEE Trans Comput Biol Bioinform"},{"key":"6017_CR17","first-page":"2543","volume-title":"IEEE Congress on Evolutionary Computation (IEEE CEC)","author":"N Noman","year":"2006","unstructured":"Noman N, Iba H: On the reconstruction of gene regulatory networks from noisy expression profiles. IEEE Congress on Evolutionary Computation (IEEE CEC). 2006, 2543-2550."},{"key":"6017_CR18","first-page":"1012","volume-title":"IEEE Congress on Evolutionary Computation (IEEE CEC)","author":"AR Chowdhury","year":"2011","unstructured":"Chowdhury AR, Chetty M: An improved method to infer gene regulatory network using S-system. IEEE Congress on Evolutionary Computation (IEEE CEC). 2011, 1012-1019."},{"key":"6017_CR19","first-page":"955","volume-title":"IEEE Congress on Evolutionary Computation (IEEE CEC)","author":"AR Chowdhury","year":"2012","unstructured":"Chowdhury AR, Chetty M, Vinh XN: Adaptive regulatory genes cardinality for reconstructing genetic networks. IEEE Congress on Evolutionary Computation (IEEE CEC). 2012, 955-962."},{"key":"6017_CR20","volume-title":"Biochemical Systems Analysis. A Study of Function and Design in Molecular Biology","author":"M Savageau","year":"1976","unstructured":"Savageau M: Biochemical Systems Analysis. A Study of Function and Design in Molecular Biology. 1976, Massachusetts: Addison-Wesley Publishing Company"},{"key":"6017_CR21","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1093\/bioinformatics\/bth463","volume":"21","author":"M Zou","year":"2005","unstructured":"Zou M, Conzen SD: A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. Bioinformatics. 2005, 21: 71-79. 10.1093\/bioinformatics\/bth463.","journal-title":"Bioinformatics"},{"issue":"3","key":"6017_CR22","doi-asserted-by":"publisher","first-page":"e1000021","DOI":"10.1371\/journal.pcbi.1000021","volume":"4","author":"SA Ramsey","year":"2008","unstructured":"Ramsey SA, Klemm SL, Zak DE, Kennedy KA, Thorsson V, Li B, Gilchrist M, Gold ES, Johnson CD, Litvak V, Navarro G, Roach JC, Rosenberger CM, Rust AG, Yudkovsky N, Aderem A, Shmulevich I: Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics. PLoS Comput Biol. 2008, 4 (3): e1000021-10.1371\/journal.pcbi.1000021.","journal-title":"PLoS Comput Biol"},{"issue":"19","key":"6017_CR23","doi-asserted-by":"publisher","first-page":"2765","DOI":"10.1093\/bioinformatics\/btr457","volume":"27","author":"NX Vinh","year":"2011","unstructured":"Vinh NX, Chetty M, Coppel R, Wangikar PP: GlobalMIT:Learning globally optimal dynamic bayesian network with the mutual information test criterion. Bioinformatics. 2011, 27 (19): 2765-2766. 10.1093\/bioinformatics\/btr457.","journal-title":"Bioinformatics"},{"key":"6017_CR24","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1186\/1752-0509-6-62","volume":"6","author":"N Morshed","year":"2012","unstructured":"Morshed N, Chetty M, Vinh XN: Simultaneous learning of instantaneous and time-delayed genetic interactions using novel information theoretic scoring technique. BMC Syst Biol. 2012, 6: 62-10.1186\/1752-0509-6-62.","journal-title":"BMC Syst Biol"},{"key":"6017_CR25","first-page":"155","volume-title":"Convergence and Hybrid Information Technology, Volume 7425 of Lecture Notes in Computer Science","author":"N Noman","year":"2012","unstructured":"Noman N, Palafox L, Iba H: On model selection criteria in reverse engineering gene networks using RNN model. Convergence and Hybrid Information Technology, Volume 7425 of Lecture Notes in Computer Science. 2012, Berlin Heidelberg: Springer, 155-164. 10.1007\/978-3-642-32645-5_20."},{"key":"6017_CR26","first-page":"93","volume-title":"Natural Computing and Beyond Volume 6 of Proceedings in Information and Communications Technology","author":"N Noman","year":"2013","unstructured":"Noman N, Palafox L, Iba H: Reconstruction of gene regulatory networks from gene expression data using decoupled recurrent neural network model. Natural Computing and Beyond Volume 6 of Proceedings in Information and Communications Technology. Edited by: Suzuki Y, Suzuki Y, Nakagaki T. 2013, Japan: Springer, 93-103. 10.1007\/978-4-431-54394-7_8."},{"key":"6017_CR27","first-page":"1423","volume-title":"Genetic and Evolutionary Computation Conference (GECCO) (Companion)","author":"L Palafox","year":"2012","unstructured":"Palafox L, Iba H: Gene regulatory network reverse engineering using population based incremental learning and K-means. Genetic and Evolutionary Computation Conference (GECCO) (Companion). 2012, 1423-1424."},{"key":"6017_CR28","first-page":"4735","volume-title":"27th Annual International Conference of the Engineering in Medicine and Biology Society (IEEE-EMBS)","author":"X Hu","year":"2005","unstructured":"Hu X, Maglia A, Wunsch D: A general recurrent neural network approach to model genetic regulatory networks. 27th Annual International Conference of the Engineering in Medicine and Biology Society (IEEE-EMBS). 2005, 4735-4738."},{"issue":"4","key":"6017_CR29","doi-asserted-by":"publisher","first-page":"681","DOI":"10.1109\/TCBB.2007.1057","volume":"4","author":"D Wunsch","year":"2007","unstructured":"Wunsch D, Frank R, Xu R: Inference of genetic regulatory networks with recurrent neural network models using particle swarm optimization. Comput Biol Bioinformatics, IEEE\/ACM Trans. 2007, 4 (4): 681-692.","journal-title":"Comput Biol Bioinformatics, IEEE\/ACM Trans"},{"key":"6017_CR30","doi-asserted-by":"publisher","first-page":"1670","DOI":"10.1093\/bioinformatics\/bth140","volume":"20","author":"EO Voit","year":"2004","unstructured":"Voit EO, Almeida J: Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics. 2004, 20: 1670-1681. 10.1093\/bioinformatics\/bth140.","journal-title":"Bioinformatics"},{"key":"6017_CR31","volume-title":"Numerical Recipies in C,2nd edition","author":"W Press","year":"1995","unstructured":"Press W, Teukolsky S, Vetterling W, Flannery B: Numerical Recipies in C,2nd edition. 1995, Cambridge University Press"},{"key":"6017_CR32","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1038\/ng873","volume":"31","author":"N Guelzim","year":"2002","unstructured":"Guelzim N, Bottani S, Bourgine P, Kepes F: Topological and causal structure of the yeast transcriptional regulatory network. Nat Genet. 2002, 31: 60-63.. 10.1038\/ng873.","journal-title":"Nat Genet"},{"issue":"11","key":"6017_CR33","doi-asserted-by":"publisher","first-page":"e13580","DOI":"10.1371\/journal.pone.0013580","volume":"5","author":"P Sheridan","year":"2010","unstructured":"Sheridan P, Kamimura T, Shimodaira H: A scale-free structure prior for graphical models with applications in functional genomics. PLoS ONE. 2010, 5 (11): e13580-10.1371\/journal.pone.0013580.","journal-title":"PLoS ONE"},{"key":"6017_CR34","unstructured":"Noman N: A memetic algorithm for reconstructing gene regulatory networks from expression profile. PhD thesis. Graduate School of Frontier Sciences at the University of Tokyo 2007"},{"issue":"4","key":"6017_CR35","doi-asserted-by":"publisher","first-page":"441","DOI":"10.1016\/S0168-9274(00)00055-6","volume":"37","author":"L Shampine","year":"2001","unstructured":"Shampine L, Thompson S: Solving DDEs in Matlab. Appl Numerical Math. 2001, 37 (4): 441-458,. 10.1016\/S0168-9274(00)00055-6. [\n                    http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0168927400000556\n                    \n                  ]","journal-title":"Appl Numerical Math"},{"key":"6017_CR36","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1023\/A:1008202821328","volume":"11","author":"R Storn","year":"1997","unstructured":"Storn R, Price KV: Differential evolution - a simple and efficient heuristic for global optimization over continuous spaces. J Glob Optimization. 1997, 11: 341-359. 10.1023\/A:1008202821328.","journal-title":"J Glob Optimization"},{"key":"6017_CR37","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1109\/TEVC.2007.895272","volume":"12","author":"N Noman","year":"2008","unstructured":"Noman N, Iba H: Accelerating differential evolution using an adaptive local search. IEEE Trans Evol Comput. 2008, 12: 107-125.","journal-title":"IEEE Trans Evol Comput"},{"key":"6017_CR38","doi-asserted-by":"publisher","first-page":"340","DOI":"10.1007\/978-3-642-20282-7_35","volume-title":"10th International Conference on Adaptive and Natural Computing Algorithms (ICANNGA)","author":"V Noroozi","year":"2011","unstructured":"Noroozi V, Hashemi AB, Meybodi MR: CellularDE: A Cellular Based Differential Evolution for Dynamic Optimization Problems. 10th International Conference on Adaptive and Natural Computing Algorithms (ICANNGA). 2011, 340-349."},{"key":"6017_CR39","doi-asserted-by":"publisher","first-page":"1631","DOI":"10.1093\/bioinformatics\/btl122","volume":"22","author":"DY Cho","year":"2006","unstructured":"Cho DY, Cho KH, Zhang BT: Identification of biochemical networks by S-tree based genetic programming. Bioinformatics. 2006, 22: 1631-1640. 10.1093\/bioinformatics\/btl122.","journal-title":"Bioinformatics"},{"key":"6017_CR40","first-page":"694","volume-title":"Proceedings of the 2009 international joint conference on Neural Networks, IJCNN\u201909","author":"S Kimura","year":"2009","unstructured":"Kimura S, Shiraishi Y, Hatakeyama M: Inference of genetic networks using linear programming machines: application of a priori knowledge. Proceedings of the 2009 international joint conference on Neural Networks, IJCNN\u201909. 2009, Piscataway: IEEE Press, 694-701."},{"key":"6017_CR41","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1049\/iet-syb.2008.0175","volume":"4","author":"H Wang","year":"2010","unstructured":"Wang H, Qian L, Dougherty E: Inference of gene regulatory networks using S-system: a unified approach. IET Syst Biol. 2010, 4: 145-146. 10.1049\/iet-syb.2008.0175.","journal-title":"IET Syst Biol"},{"key":"6017_CR42","first-page":"1840","volume-title":"IEEE Congress on Evolutionary Computation (IEEE CEC)","author":"N Morshed","year":"2011","unstructured":"Morshed N, Chetty M: Reconstructing genetic networks with concurrent representation of instantaneous and time-delayed interactions. IEEE Congress on Evolutionary Computation (IEEE CEC). 2011, 1840-1847."},{"key":"6017_CR43","doi-asserted-by":"publisher","first-page":"3594","DOI":"10.1093\/bioinformatics\/bth448","volume":"20","author":"J Yu","year":"2004","unstructured":"Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED: Advances to Bayesian network inference for generating causal networks from observational biological data. Bioinformatics. 2004, 20: 3594-3603. 10.1093\/bioinformatics\/bth448.","journal-title":"Bioinformatics"},{"key":"6017_CR44","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1186\/1471-2105-11-154","volume":"11","author":"P Zoppoli","year":"2010","unstructured":"Zoppoli P, Morganella S, Ceccarelli M: TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach. BMC Bioinformatics. 2010, 11: 154-10.1186\/1471-2105-11-154. [\n                    http:\/\/www.biomedcentral.com\/1471-2105\/11\/154\n                    \n                  ]","journal-title":"BMC Bioinformatics"},{"key":"6017_CR45","doi-asserted-by":"publisher","first-page":"939","DOI":"10.1101\/gr.073601.107","volume":"18","author":"GG Della","year":"2008","unstructured":"Della GG, Bansal M, Ambesi-Impiombato A, Antonini D, Missero C, di Bernardo D: Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering. Genome Res. 2008, 18: 939-948. 10.1101\/gr.073601.107.","journal-title":"Genome Res"},{"key":"6017_CR46","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1186\/1471-2105-9-23","volume":"9","author":"S Kimura","year":"2008","unstructured":"Kimura S, Sonoda K, Yamane S, Maeda H, Matsumura K, Hatakeyama M: Function approximation approach to the inference of reduced NGnet models of genetic networks. BMC Bioinformatics. 2008, 9: 23-10.1186\/1471-2105-9-23.","journal-title":"BMC Bioinformatics"},{"issue":"suppl 2","key":"6017_CR47","doi-asserted-by":"publisher","first-page":"ii138","DOI":"10.1093\/bioinformatics\/btg1071","volume":"19","author":"BE Perrin","year":"2003","unstructured":"Perrin BE, Ralaivola L, Mazurie A, Bottani S, Mallet J, d\u2019Alch\u00e9-Buc F: Gene networks inference using dynamic Bayesian networks. Bioinformatics. 2003, 19 (suppl 2): ii138-ii148. 10.1093\/bioinformatics\/btg1071.","journal-title":"Bioinformatics"},{"key":"6017_CR48","first-page":"1","volume-title":"IEEE CEC","author":"S Kimura","year":"2010","unstructured":"Kimura S, Amano Y, Matsumura K, Okada-Hatakeyama M: Effective parameter estimation for S-system models using LPMs and evolutionary algorithms. IEEE CEC. 2010, 1-8."},{"key":"6017_CR49","first-page":"15","volume-title":"Proceedings of the International Symposium on Biocomputing","author":"MM Hasan","year":"2010","unstructured":"Hasan MM, Noman N, Iba H: A prior knowledge based approach to infer gene regulatory networks. Proceedings of the International Symposium on Biocomputing. 2010, 15-17."},{"issue":"99","key":"6017_CR50","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1109\/TEVC.2012.2218610","volume":"PP","author":"L Palafox","year":"2012","unstructured":"Palafox L, Iba H, Noman N: Reverse engineering of gene regulatory networks using dissipative particle swarm optimization. IEEE Trans Evol Comput. 2012, PP (99): 1-10.1109\/TEVC.2012.2218610.","journal-title":"IEEE Trans Evol Comput"},{"issue":"S-1","key":"6017_CR51","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1186\/1471-2105-11-S1-S56","volume":"11","author":"M Kabir","year":"2010","unstructured":"Kabir M, Noman N, Iba H: Reverse engineering gene regulatory network from microarray data using linear time-variant model. BMC Bioinformatics. 2010, 11 (S-1): 56-","journal-title":"BMC Bioinformatics"},{"issue":"16","key":"6017_CR52","doi-asserted-by":"publisher","first-page":"10555","DOI":"10.1073\/pnas.152046799","volume":"99","author":"M Ronen","year":"2002","unstructured":"Ronen M, Rosenberg R, Shraiman BI, Alon U: Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics. Proc Nat Acad Sci. 2002, 99 (16): 10555-10560. 10.1073\/pnas.152046799.","journal-title":"Proc Nat Acad Sci"},{"key":"6017_CR53","doi-asserted-by":"publisher","first-page":"918","DOI":"10.1093\/bioinformatics\/btp072","volume":"25","author":"S Kimura","year":"2009","unstructured":"Kimura S, Nakayama S, Hatakeyama M: Genetic network inference as a series of discrimination tasks. Bioinformatics. 2009, 25: 918-925. 10.1093\/bioinformatics\/btp072.","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-196.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-14-196\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-196.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T10:58:37Z","timestamp":1548154717000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-14-196"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,6,18]]},"references-count":53,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,12]]}},"alternative-id":["6017"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-14-196","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,6,18]]},"article-number":"196"}}