{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,2,1]],"date-time":"2024-02-01T13:53:55Z","timestamp":1706795635732},"reference-count":19,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2013,1,19]],"date-time":"2013-01-19T00:00:00Z","timestamp":1358553600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2013,12]]},"DOI":"10.1186\/1471-2105-14-25","type":"journal-article","created":{"date-parts":[[2013,1,19]],"date-time":"2013-01-19T19:14:25Z","timestamp":1358622865000},"source":"Crossref","is-referenced-by-count":7,"title":["Extending the BEAGLE library to a multi-FPGA platform"],"prefix":"10.1186","volume":"14","author":[{"given":"Zheming","family":"Jin","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jason D","family":"Bakos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2013,1,19]]},"reference":[{"key":"5727_CR1","volume-title":"Inferring Phylogenies","author":"J Felsenstein","year":"2004","unstructured":"Felsenstein J: Inferring Phylogenies. Sunderland, MA: Sinarer Associates, Inc. Publishers; 2004."},{"issue":"1","key":"5727_CR2","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1093\/sysbio\/syr100","volume":"61","author":"DL Ayres","year":"2012","unstructured":"Ayres DL, Aaron D, Zwick DJ, Peter B, Holder MT, Lewis PO, Huelsenbeck JP, Fredrik R, Swofford DL, Cummings MP, Andrew R, Suchard MA: BEAGLE: an Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Syst Biol 2012,61(1):170-173. 10.1093\/sysbio\/syr100","journal-title":"Syst Biol"},{"key":"5727_CR3","unstructured":"Convey HC-1 family. \n                    http:\/\/www.conveycomputer.com"},{"key":"5727_CR4","first-page":"512","volume-title":"Proc. IEEE Computational Systems Bioinformatics Conference table of contents","author":"TST Mak","year":"2004","unstructured":"Mak TST, Lam KP: Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA. Proc. IEEE Computational Systems Bioinformatics Conference table of contents 2004, 512-514."},{"key":"5727_CR5","first-page":"1","volume-title":"Proc. Eighth IEEE International Workshop on High Performance Computational Biology","author":"N Alachiotis","year":"2009","unstructured":"Alachiotis N, Sotiriades E, Dollas A, Stamatakis A: Exploring FPGAs for accelerating the Phylogenetic Likelihood Function. Proc. Eighth IEEE International Workshop on High Performance Computational Biology 2009, 1-8."},{"key":"5727_CR6","first-page":"674","volume-title":"Proc. International Conference on Field Programmable Logic and Applications","author":"N Alachiotis","year":"2009","unstructured":"Alachiotis N, Sotiriades E, Dollas A, Stamatakis A: A Reconfigurable Architecture for the Phylogenetic Likelihood Function. Proc. International Conference on Field Programmable Logic and Applications 2009, 674-678."},{"key":"5727_CR7","unstructured":"Nvidia CUDA Framework. \n                    http:\/\/www.nvidia.com\/object\/cuda_home_new.html"},{"issue":"11","key":"5727_CR8","doi-asserted-by":"publisher","first-page":"1370","DOI":"10.1093\/bioinformatics\/btp244","volume":"25","author":"MA Suchard","year":"2009","unstructured":"Suchard MA, Rambaut A: Many-Core Algorithms for Statistical Phylogenetics. Bioinformatics 2009,25(11):1370-1376. 10.1093\/bioinformatics\/btp244","journal-title":"Bioinformatics"},{"issue":"No. 9","key":"5727_CR9","doi-asserted-by":"publisher","first-page":"1255","DOI":"10.1093\/bioinformatics\/btr140","volume":"27","author":"J Zhou","year":"2011","unstructured":"Zhou J, Liu X, Stones DS, Xie Q, Wang G: MrBayes on a Graphics Processing Unit. Bioinformatics 2011,27(No. 9):1255-1261. 10.1093\/bioinformatics\/btr140","journal-title":"Bioinformatics"},{"key":"5727_CR10","doi-asserted-by":"publisher","first-page":"184","DOI":"10.1186\/1471-2105-11-184","volume":"11","author":"Z Stephanie","year":"2010","unstructured":"Stephanie Z, Bakos JD: FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods. BMC Bioinforma 2010, 11: 184. 10.1186\/1471-2105-11-184","journal-title":"BMC Bioinforma"},{"key":"5727_CR11","unstructured":"Nallatech, Intel Xeon FSB FPGA Accelerator Module. \n                    http:\/\/www.nallatech.com\/Intel-Xeon-FSB-Socket-Fillers\/fsb-development-systems.html"},{"key":"5727_CR12","unstructured":"DRC Computer, DRC Reconfigurable Processor Units (RPU). \n                    http:\/\/www.drccomputer.com\/drc\/modules.html"},{"key":"5727_CR13","unstructured":"XtremeData Inc., XD2000i\u2122 FPGA In-Socket Accelerator for Intel FSB. \n                    http:\/\/www.xtremedata.com\/products\/accelerators\/in-socket-accelerator\/xd2000i"},{"key":"5727_CR14","unstructured":"Xilinx Core Generator. \n                    http:\/\/www.xilinx.com\/ise\/products\/coregen_overview.pdf"},{"key":"5727_CR15","unstructured":"Xilinx Floating Operator Data Sheet. 2009. \n                    http:\/\/www.xilinx.com\/support\/documentation\/ip_documentation\/floating_point_ds335.pdf"},{"key":"5727_CR16","unstructured":"Virtex-5 FPGA User Guide. \n                    http:\/\/www.xilinx.com\/support\/documentation\/user_guides\/ug190.pdf"},{"key":"5727_CR17","unstructured":"Xilinx ISE Design Suite 13. \n                    http:\/\/www.xilinx.com\/support\/documentation\/dt_ise13-2.htm"},{"key":"5727_CR18","first-page":"70","volume-title":"3D Recursive Gaussian IIR on GPU and FPGAs, A Case Study for Accelerating Bandwidth-Bounded Applications","author":"J Cong","year":"2011","unstructured":"Cong J, Huang M, Zou Y Proceedings of the 9th IEEE Symposium on Application Specific Processors (SASP 2011). In 3D Recursive Gaussian IIR on GPU and FPGAs, A Case Study for Accelerating Bandwidth-Bounded Applications. San Diego, CA; 2011:70-73."},{"key":"5727_CR19","unstructured":"Xilinx UG193 Virtex-5 XtreameDSP Design Considerations. \n                    http:\/\/www.xilinx.com\/support\/documentation\/user_guides\/ug193.pdf"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-25.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-14-25\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-25.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T10:24:40Z","timestamp":1548152680000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-14-25"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,1,19]]},"references-count":19,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,12]]}},"alternative-id":["5727"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-14-25","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,1,19]]},"article-number":"25"}}