{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,5]],"date-time":"2026-04-05T16:44:03Z","timestamp":1775407443119,"version":"3.50.1"},"reference-count":51,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2013,11,19]],"date-time":"2013-11-19T00:00:00Z","timestamp":1384819200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2013,12]]},"DOI":"10.1186\/1471-2105-14-327","type":"journal-article","created":{"date-parts":[[2013,11,19]],"date-time":"2013-11-19T01:01:32Z","timestamp":1384822892000},"source":"Crossref","is-referenced-by-count":72,"title":["Filling out the structural map of the NTF2-like superfamily"],"prefix":"10.1186","volume":"14","author":[{"given":"Ruth Y","family":"Eberhardt","sequence":"first","affiliation":[]},{"given":"Yuanyuan","family":"Chang","sequence":"additional","affiliation":[]},{"given":"Alex","family":"Bateman","sequence":"additional","affiliation":[]},{"given":"Alexey G","family":"Murzin","sequence":"additional","affiliation":[]},{"given":"Herbert L","family":"Axelrod","sequence":"additional","affiliation":[]},{"given":"William C","family":"Hwang","sequence":"additional","affiliation":[]},{"given":"L","family":"Aravind","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2013,11,19]]},"reference":[{"issue":"3","key":"6203_CR1","doi-asserted-by":"publisher","first-page":"422","DOI":"10.1006\/jmbi.1996.0411","volume":"260","author":"TL Bullock","year":"1996","unstructured":"Bullock TL, Clarkson WD, Kent HM, Stewart M: The 1.6 angstroms resolution crystal structure of nuclear transport factor 2 (NTF2). J Mol Biol. 1996, 260 (3): 422-431. 10.1006\/jmbi.1996.0411.","journal-title":"J Mol Biol"},{"issue":"9","key":"6203_CR2","doi-asserted-by":"publisher","first-page":"1911","DOI":"10.1038\/sj.emboj.7600201","volume":"23","author":"A Sultana","year":"2004","unstructured":"Sultana A, Kallio P, Jansson A, Wang JS, Niemi J, Mantsala P, Schneider G: Structure of the polyketide cyclase SnoaL reveals a novel mechanism for enzymatic aldol condensation. EMBO J. 2004, 23 (9): 1911-1921. 10.1038\/sj.emboj.7600201.","journal-title":"EMBO J"},{"issue":"28","key":"6203_CR3","doi-asserted-by":"publisher","first-page":"9931","DOI":"10.1021\/bi980321b","volume":"37","author":"M Nakasako","year":"1998","unstructured":"Nakasako M, Motoyama T, Kurahashi Y, Yamaguchi I: Cryogenic X-ray crystal structure analysis for the complex of scytalone dehydratase of a rice blast fungus and its tight-binding inhibitor, carpropamid: the structural basis of tight-binding inhibition. Biochemistry. 1998, 37 (28): 9931-9939. 10.1021\/bi980321b.","journal-title":"Biochemistry"},{"issue":"11","key":"6203_CR4","doi-asserted-by":"publisher","first-page":"2583","DOI":"10.1093\/emboj\/cdg275","volume":"22","author":"M Arand","year":"2003","unstructured":"Arand M, Hallberg BM, Zou J, Bergfors T, Oesch F, van der Werf MJ, De Bont JA, Jones TA, Mowbray SL: Structure of Rhodococcus erythropolis limonene-1,2-epoxide hydrolase reveals a novel active site. EMBO J. 2003, 22 (11): 2583-2592. 10.1093\/emboj\/cdg275.","journal-title":"EMBO J"},{"issue":"46","key":"6203_CR5","doi-asserted-by":"publisher","first-page":"14030","DOI":"10.1021\/bi971546+","volume":"36","author":"SW Kim","year":"1997","unstructured":"Kim SW, Cha SS, Cho HS, Kim JS, Ha NC, Cho MJ, Joo S, Kim KK, Choi KY, Oh BH: High-resolution crystal structures of delta5-3-ketosteroid isomerase with and without a reaction intermediate analogue. Biochemistry. 1997, 36 (46): 14030-14036. 10.1021\/bi971546+.","journal-title":"Biochemistry"},{"issue":"7","key":"6203_CR6","doi-asserted-by":"publisher","first-page":"386","DOI":"10.1124\/mi.3.7.386","volume":"3","author":"LC Griffith","year":"2003","unstructured":"Griffith LC, Lu CS, Sun XX: CaMKII, an enzyme on the move: regulation of temporospatial localization. Mol Interv. 2003, 3 (7): 386-403. 10.1124\/mi.3.7.386.","journal-title":"Mol Interv"},{"issue":"8","key":"6203_CR7","doi-asserted-by":"publisher","first-page":"1603","DOI":"10.1038\/sj.emboj.7601070","volume":"25","author":"M Ott","year":"2006","unstructured":"Ott M, Prestele M, Bauerschmitt H, Funes S, Bonnefoy N, Herrmann JM: Mba1, a membrane-associated ribosome receptor in mitochondria. EMBO J. 2006, 25 (8): 1603-1610. 10.1038\/sj.emboj.7601070.","journal-title":"EMBO J"},{"issue":"3","key":"6203_CR8","doi-asserted-by":"publisher","first-page":"2018","DOI":"10.1074\/jbc.M112.428847","volume":"288","author":"N Goessweiner-Mohr","year":"2013","unstructured":"Goessweiner-Mohr N, Grumet L, Arends K, Pavkov-Keller T, Gruber CC, Gruber K, Birner-Gruenberger R, Kropec-Huebner A, Huebner J, Grohmann E, et al: The 2.5 A structure of the enterococcus conjugation protein TraM resembles VirB8 type IV secretion proteins. J Biol Chem. 2013, 288 (3): 2018-2028. 10.1074\/jbc.M112.428847.","journal-title":"J Biol Chem"},{"issue":"2","key":"6203_CR9","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1111\/j.1365-2958.2011.07930.x","volume":"83","author":"CJ Porter","year":"2012","unstructured":"Porter CJ, Bantwal R, Bannam TL, Rosado CJ, Pearce MC, Adams V, Lyras D, Whisstock JC, Rood JI: The conjugation protein TcpC from Clostridium perfringens is structurally related to the type IV secretion system protein VirB8 from Gram-negative bacteria. Mol Microbiol. 2012, 83 (2): 275-288. 10.1111\/j.1365-2958.2011.07930.x.","journal-title":"Mol Microbiol"},{"issue":"12","key":"6203_CR10","doi-asserted-by":"publisher","first-page":"4596","DOI":"10.1073\/pnas.0408927102","volume":"102","author":"L Terradot","year":"2005","unstructured":"Terradot L, Bayliss R, Oomen C, Leonard GA, Baron C, Waksman G: Structures of two core subunits of the bacterial type IV secretion system, VirB8 from Brucella suis and ComB10 from Helicobacter pylori. Proc Natl Acad Sci U S A. 2005, 102 (12): 4596-4601. 10.1073\/pnas.0408927102.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"6203_CR11","doi-asserted-by":"publisher","first-page":"18","DOI":"10.1186\/1745-6150-7-18","volume":"7","author":"D Zhang","year":"2012","unstructured":"Zhang D, De Souza RF, Anantharaman V, Iyer LM, Aravind L: Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics. Biol Direct. 2012, 7: 18-10.1186\/1745-6150-7-18.","journal-title":"Biol Direct"},{"key":"6203_CR12","doi-asserted-by":"publisher","first-page":"D290","DOI":"10.1093\/nar\/gkr1065","volume":"40","author":"M Punta","year":"2012","unstructured":"Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, et al: The Pfam protein families database. Nucleic Acids Res. 2012, 40: D290-D301. 10.1093\/nar\/gkr1065.","journal-title":"Nucleic Acids Res"},{"issue":"13","key":"6203_CR13","doi-asserted-by":"publisher","first-page":"3320","DOI":"10.1093\/nar\/gkg556","volume":"31","author":"P Gouet","year":"2003","unstructured":"Gouet P, Robert X, Courcelle E: ESPript\/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res. 2003, 31 (13): 3320-3323. 10.1093\/nar\/gkg556.","journal-title":"Nucleic Acids Res"},{"key":"6203_CR14","doi-asserted-by":"publisher","first-page":"W569","DOI":"10.1093\/nar\/gks576","volume":"40","author":"H Zhang","year":"2012","unstructured":"Zhang H, Gao S, Lercher MJ, Hu S, Chen WH: EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Res. 2012, 40: W569-W572. 10.1093\/nar\/gks576.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"6203_CR15","doi-asserted-by":"publisher","first-page":"e18910","DOI":"10.1371\/journal.pone.0018910","volume":"6","author":"C Chen","year":"2011","unstructured":"Chen C, Natale DA, Finn RD, Huang H, Zhang J, Wu CH, Mazumder R: Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation. PloS one. 2011, 6 (4): e18910-10.1371\/journal.pone.0018910.","journal-title":"PloS one"},{"issue":"5","key":"6203_CR16","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1016\/j.jmb.2004.03.016","volume":"338","author":"L Kall","year":"2004","unstructured":"Kall L, Krogh A, Sonnhammer EL: A combined transmembrane topology and signal peptide prediction method. J Mol Biol. 2004, 338 (5): 1027-1036. 10.1016\/j.jmb.2004.03.016.","journal-title":"J Mol Biol"},{"issue":"2","key":"6203_CR17","doi-asserted-by":"publisher","first-page":"R11","DOI":"10.1186\/gb-2003-4-2-r11","volume":"4","author":"V Anantharaman","year":"2003","unstructured":"Anantharaman V, Aravind L: Evolutionary history, structural features and biochemical diversity of the NlpC\/P60 superfamily of enzymes. Genome Biol. 2003, 4 (2): R11-10.1186\/gb-2003-4-2-r11.","journal-title":"Genome Biol"},{"issue":"Pt 1","key":"6203_CR18","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1107\/S0907444909042073","volume":"66","author":"VB Chen","year":"2010","unstructured":"Chen VB, Arendall WB, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC: MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr. 2010, 66 (Pt 1): 12-21.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"Suppl 2","key":"6203_CR19","doi-asserted-by":"publisher","first-page":"ii246","DOI":"10.1093\/bioinformatics\/btg1086","volume":"19","author":"Y Ye","year":"2003","unstructured":"Ye Y, Godzik A: Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003, 19 (Suppl 2): ii246-ii255.","journal-title":"Bioinformatics"},{"issue":"4","key":"6203_CR20","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1002\/prot.10007","volume":"45","author":"Y Nagata","year":"2001","unstructured":"Nagata Y, Mori K, Takagi M, Murzin AG, Damborsky J: Identification of protein fold and catalytic residues of gamma-hexachlorocyclohexane dehydrochlorinase LinA. Proteins. 2001, 45 (4): 471-477. 10.1002\/prot.10007.","journal-title":"Proteins"},{"issue":"41","key":"6203_CR21","doi-asserted-by":"publisher","first-page":"17377","DOI":"10.1073\/pnas.0907971106","volume":"106","author":"D Petrey","year":"2009","unstructured":"Petrey D, Fischer M, Honig B: Structural relationships among proteins with different global topologies and their implications for function annotation strategies. Proc Natl Acad Sci USA. 2009, 106 (41): 17377-17382. 10.1073\/pnas.0907971106.","journal-title":"Proc Natl Acad Sci USA"},{"issue":"10","key":"6203_CR22","doi-asserted-by":"publisher","first-page":"2362","DOI":"10.1093\/bioinformatics\/bti353","volume":"21","author":"Y Ye","year":"2005","unstructured":"Ye Y, Godzik A: Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005, 21 (10): 2362-2369. 10.1093\/bioinformatics\/bti353.","journal-title":"Bioinformatics"},{"issue":"13","key":"6203_CR23","doi-asserted-by":"publisher","first-page":"1605","DOI":"10.1002\/jcc.20084","volume":"25","author":"EF Pettersen","year":"2004","unstructured":"Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE: UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem. 2004, 25 (13): 1605-1612. 10.1002\/jcc.20084.","journal-title":"J Comput Chem"},{"key":"6203_CR24","doi-asserted-by":"publisher","first-page":"W545","DOI":"10.1093\/nar\/gkq366","volume":"38","author":"L Holm","year":"2010","unstructured":"Holm L, Rosenstrom P: Dali server: conservation mapping in 3D. Nucleic Acids Res. 2010, 38: W545-W549. 10.1093\/nar\/gkq366.","journal-title":"Nucleic Acids Res"},{"issue":"7","key":"6203_CR25","doi-asserted-by":"publisher","first-page":"e1000426","DOI":"10.1371\/journal.pbio.1000426","volume":"8","author":"P Rellos","year":"2010","unstructured":"Rellos P, Pike AC, Niesen FH, Salah E, Lee WH, Von Delft F, Knapp S: Structure of the CaMKIIdelta\/calmodulin complex reveals the molecular mechanism of CaMKII kinase activation. PLoS biology. 2010, 8 (7): e1000426-10.1371\/journal.pbio.1000426.","journal-title":"PLoS biology"},{"issue":"1","key":"6203_CR26","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/S0005-2728(00)00272-3","volume":"1505","author":"P Dimroth","year":"2001","unstructured":"Dimroth P, Jockel P, Schmid M: Coupling mechanism of the oxaloacetate decarboxylase Na(+) pump. Biochim Biophys Acta. 2001, 1505 (1): 1-14. 10.1016\/S0005-2728(00)00272-3.","journal-title":"Biochim Biophys Acta"},{"key":"6203_CR27","doi-asserted-by":"publisher","first-page":"D5","DOI":"10.1093\/nar\/gkn741","volume":"37","author":"EW Sayers","year":"2009","unstructured":"Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, et al: Database resources of the national center for biotechnology information. Nucleic Acids Res. 2009, 37: D5-D15. 10.1093\/nar\/gkn741.","journal-title":"Nucleic Acids Res"},{"issue":"12","key":"6203_CR28","doi-asserted-by":"publisher","first-page":"1000","DOI":"10.1093\/bioinformatics\/15.12.1000","volume":"15","author":"AA Schaffer","year":"1999","unstructured":"Schaffer AA, Wolf YI, Ponting CP, Koonin EV, Aravind L, Altschul SF: IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics. 1999, 15 (12): 1000-1011. 10.1093\/bioinformatics\/15.12.1000.","journal-title":"Bioinformatics"},{"issue":"2","key":"6203_CR29","doi-asserted-by":"publisher","first-page":"982","DOI":"10.1002\/prot.21786","volume":"71","author":"HE Klock","year":"2008","unstructured":"Klock HE, Koesema EJ, Knuth MW, Lesley SA: Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts. Proteins. 2008, 71 (2): 982-994. 10.1002\/prot.21786.","journal-title":"Proteins"},{"issue":"18","key":"6203_CR30","doi-asserted-by":"publisher","first-page":"11664","DOI":"10.1073\/pnas.142413399","volume":"99","author":"SA Lesley","year":"2002","unstructured":"Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, et al: Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002, 99 (18): 11664-11669. 10.1073\/pnas.142413399.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"Pt 10","key":"6203_CR31","doi-asserted-by":"publisher","first-page":"1137","DOI":"10.1107\/S1744309110038212","volume":"66","author":"MA Elsliger","year":"2010","unstructured":"Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wooley J, Wuthrich K, Wilson IA: The JCSG high-throughput structural biology pipeline. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010, 66 (Pt 10): 1137-1142.","journal-title":"Acta Crystallogr Sect F Struct Biol Cryst Commun"},{"key":"6203_CR32","doi-asserted-by":"publisher","first-page":"795","DOI":"10.1107\/S0021889893005588","volume":"26","author":"W Kabsch","year":"1993","unstructured":"Kabsch W: Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Cryst. 1993, 26: 795-800. 10.1107\/S0021889893005588.","journal-title":"J Appl Cryst"},{"issue":"2","key":"6203_CR33","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1107\/S0907444909047337","volume":"66","author":"W Kabsch","year":"2010","unstructured":"Kabsch W: Xds. Acta Crystallogr D Biol Crystallogr. 2010, 66 (2): 125-132. 10.1107\/S0907444909047337.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"key":"6203_CR34","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/978-1-4020-6316-9_4","volume-title":"Evolving Methods for Macromolecular Crystallography","author":"AGW Leslie","year":"2007","unstructured":"Leslie AGW, Powell HR: Processing diffraction data with MOSFLM. Evolving Methods for Macromolecular Crystallography. Edited by: Read RJ, Sussman JL. 2007, Dordrech, The Netherlands: Springer, 41-51. volume 245. ISBN 978-1-4020-6314-5"},{"issue":"Pt 1","key":"6203_CR35","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1107\/S0907444905036693","volume":"62","author":"P Evans","year":"2006","unstructured":"Evans P: Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr. 2006, 62 (Pt 1): 72-82.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"Pt 10 Pt 2","key":"6203_CR36","doi-asserted-by":"publisher","first-page":"1772","DOI":"10.1107\/S0907444902011678","volume":"58","author":"TR Schneider","year":"2002","unstructured":"Schneider TR, Sheldrick GM: Substructure solution with SHELXD. Acta Crystallogr D Biol Crystallogr. 2002, 58 (Pt 10 Pt 2): 1772-1779.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"key":"6203_CR37","first-page":"215","volume":"364","author":"C Vonrhein","year":"2007","unstructured":"Vonrhein C, Blanc E, Roversi P, Bricogne G: Automated structure solution with autoSHARP. Methods Mol Biol. 2007, 364: 215-230.","journal-title":"Methods Mol Biol"},{"issue":"Pt 1","key":"6203_CR38","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1107\/S0907444902018036","volume":"59","author":"TC Terwilliger","year":"2003","unstructured":"Terwilliger TC: Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr D Biol Crystallogr. 2003, 59 (Pt 1): 38-44.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"7","key":"6203_CR39","doi-asserted-by":"publisher","first-page":"1171","DOI":"10.1038\/nprot.2008.91","volume":"3","author":"G Langer","year":"2008","unstructured":"Langer G, Cohen SX, Lamzin VS, Perrakis A: Automated macromolecular model building for X-ray crystallography using ARP\/wARP version 7. Nature protocols. 2008, 3 (7): 1171-1179. 10.1038\/nprot.2008.91.","journal-title":"Nature protocols"},{"issue":"9","key":"6203_CR40","doi-asserted-by":"publisher","first-page":"1002","DOI":"10.1107\/S0907444906022116","volume":"62","author":"K Cowtan","year":"2006","unstructured":"Cowtan K: The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr D Biol Crystallogr. 2006, 62 (9): 1002-1011. 10.1107\/S0907444906022116.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"Pt 4","key":"6203_CR41","doi-asserted-by":"publisher","first-page":"328","DOI":"10.1107\/S0907444911039655","volume":"68","author":"K Cowtan","year":"2012","unstructured":"Cowtan K: Completion of autobuilt protein models using a database of protein fragments. Acta Crystallogr D Biol Crystallogr. 2012, 68 (Pt 4): 328-335.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"Pt 12 Pt 1","key":"6203_CR42","doi-asserted-by":"publisher","first-page":"2126","DOI":"10.1107\/S0907444904019158","volume":"60","author":"P Emsley","year":"2004","unstructured":"Emsley P, Cowtan K: Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr. 2004, 60 (Pt 12 Pt 1): 2126-2132.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"Pt 1","key":"6203_CR43","doi-asserted-by":"publisher","first-page":"122","DOI":"10.1107\/S0907444900014736","volume":"57","author":"MD Winn","year":"2001","unstructured":"Winn MD, Isupov MN, Murshudov GN: Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr D Biol Crystallogr. 2001, 57 (Pt 1): 122-133.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"Pt 4","key":"6203_CR44","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1107\/S0907444911056058","volume":"68","author":"OS Smart","year":"2012","unstructured":"Smart OS, Womack TO, Flensburg C, Keller P, Paciorek W, Sharff A, Vonrhein C, Bricogne G: Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER. Acta Crystallogr D Biol Crystallogr. 2012, 68 (Pt 4): 368-380.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"32","key":"6203_CR45","doi-asserted-by":"publisher","first-page":"13347","DOI":"10.1073\/pnas.1100891108","volume":"108","author":"L Pham","year":"2011","unstructured":"Pham L, Christadore L, Schaus S, Kolaczyk ED: Network-based prediction for sources of transcriptional dysregulation using latent pathway identification analysis. Proc Natl Acad Sci U S A. 2011, 108 (32): 13347-13352. 10.1073\/pnas.1100891108.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"Pt 10","key":"6203_CR46","doi-asserted-by":"publisher","first-page":"1833","DOI":"10.1107\/S0907444904019419","volume":"60","author":"H Yang","year":"2004","unstructured":"Yang H, Guranovic V, Dutta S, Feng Z, Berman HM, Westbrook JD: Automated and accurate deposition of structures solved by X-ray diffraction to the protein data bank. Acta Crystallogr D Biol Crystallogr. 2004, 60 (Pt 10): 1833-1839.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"1","key":"6203_CR47","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1016\/0263-7855(90)80070-V","volume":"8","author":"G Vriend","year":"1990","unstructured":"Vriend G: WHAT IF: a molecular modeling and drug design program. J Mol Graph. 1990, 8 (1): 52-56. 10.1016\/0263-7855(90)80070-V.","journal-title":"J Mol Graph"},{"issue":"Pt 1","key":"6203_CR48","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1107\/S0907444998006684","volume":"55","author":"AA Vaguine","year":"1999","unstructured":"Vaguine AA, Richelle J, Wodak SJ: SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model. Acta Crystallogr D Biol Crystallogr. 1999, 55 (Pt 1): 191-205.","journal-title":"Acta Crystallogr D Biol Crystallogr"},{"issue":"13","key":"6203_CR49","doi-asserted-by":"publisher","first-page":"3497","DOI":"10.1093\/nar\/gkg500","volume":"31","author":"R Chenna","year":"2003","unstructured":"Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD: Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003, 31 (13): 3497-3500. 10.1093\/nar\/gkg500.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"6203_CR50","doi-asserted-by":"publisher","first-page":"371","DOI":"10.1006\/jmbi.1997.1309","volume":"273","author":"GJ Kleywegt","year":"1997","unstructured":"Kleywegt GJ: Validation of protein models from Calpha coordinates alone. J Mol Biol. 1997, 273 (2): 371-376. 10.1006\/jmbi.1997.1309.","journal-title":"J Mol Biol"},{"issue":"3","key":"6203_CR51","doi-asserted-by":"publisher","first-page":"774","DOI":"10.1016\/j.jmb.2007.05.022","volume":"372","author":"E Krissinel","year":"2007","unstructured":"Krissinel E, Henrick K: Inference of macromolecular assemblies from crystalline state. J Mol Biol. 2007, 372 (3): 774-797. 10.1016\/j.jmb.2007.05.022.","journal-title":"J Mol Biol"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-327.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-14-327\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-327.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T05:57:23Z","timestamp":1548136643000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-14-327"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,11,19]]},"references-count":51,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,12]]}},"alternative-id":["6203"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-14-327","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,11,19]]},"article-number":"327"}}