{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,5,2]],"date-time":"2023-05-02T07:50:39Z","timestamp":1683013839141},"reference-count":25,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2013,3,5]],"date-time":"2013-03-05T00:00:00Z","timestamp":1362441600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2013,12]]},"DOI":"10.1186\/1471-2105-14-84","type":"journal-article","created":{"date-parts":[[2013,3,5]],"date-time":"2013-03-05T23:14:17Z","timestamp":1362525257000},"source":"Crossref","is-referenced-by-count":3,"title":["Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples"],"prefix":"10.1186","volume":"14","author":[{"given":"David","family":"Mos\u00e9n-Ansorena","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ana Mar\u00eda","family":"Aransay","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2013,3,5]]},"reference":[{"issue":"2","key":"5737_CR1","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1038\/2524","volume":"20","author":"D Pinkel","year":"1998","unstructured":"Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y: High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet 1998,20(2):207-211. 10.1038\/2524","journal-title":"Nat Genet"},{"issue":"7283","key":"5737_CR2","doi-asserted-by":"publisher","first-page":"899","DOI":"10.1038\/nature08822","volume":"463","author":"R Beroukhim","year":"2010","unstructured":"Beroukhim R, Mermel CH, Porter D, Wei G, Raychaudhuri S, Donovan J, Barretina J, Boehm JS, Dobson J, Urashima M: The landscape of somatic copy-number alteration across human cancers. Nature 2010,463(7283):899-905. 10.1038\/nature08822","journal-title":"Nature"},{"issue":"7337","key":"5737_CR3","doi-asserted-by":"publisher","first-page":"254","DOI":"10.1038\/nature09877","volume":"471","author":"F Notta","year":"2011","unstructured":"Notta F, Mullighan CG Y, Wang JC, Poeppl A, Doulatov S, Phillips L, Ma J, Minden MD, Downing JR, Dick JE: Evolution of human BCR-ABL1 lymphoblastic leukaemia-initiating cells. Nature 2011,471(7337):254-254.","journal-title":"Nature"},{"key":"5737_CR4","unstructured":"Illumina. http:\/\/www.illumina.com"},{"key":"5737_CR5","unstructured":"Affymetrix. http:\/\/www.affymetrix.com"},{"issue":"19","key":"5737_CR6","doi-asserted-by":"publisher","first-page":"e126","DOI":"10.1093\/nar\/gkn556","volume":"36","author":"SJ Diskin","year":"2008","unstructured":"Diskin SJ, Li M, Hou C, Yang S, Glessner J, Hakonarson H, Bucan M, Maris JM, Wang K: Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms. Nucleic Acids Res 2008,36(19):e126-e126. 10.1093\/nar\/gkn556","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"5737_CR7","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1186\/1471-2105-9-409","volume":"9","author":"J Staaf","year":"2008","unstructured":"Staaf J, Vallon-Christersson J, Lindgren D, Juliusson G, Rosenquist R, H\u00f6glund M, Borg \u00c5, Ringn\u00e9r M: Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. BMC Bioinformatics 2008,9(1):409-409. 10.1186\/1471-2105-9-409","journal-title":"BMC Bioinformatics"},{"issue":"9","key":"5737_CR8","doi-asserted-by":"publisher","first-page":"R136","DOI":"10.1186\/gb-2008-9-9-r136","volume":"9","author":"J Staaf","year":"2008","unstructured":"Staaf J, Lindgren D, Vallon-Christersson J, Isaksson A, G\u00f6ransson H, Juliusson G, Rosenquist R, H\u00f6glund M, Borg A, Ringn\u00e9r M: Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays. Genome Biol 2008,9(9):R136-R136. 10.1186\/gb-2008-9-9-r136","journal-title":"Genome Biol"},{"issue":"1","key":"5737_CR9","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1186\/1471-2164-12-230","volume":"12","author":"F Parisi","year":"2011","unstructured":"Parisi F, Ariyan S, Narayan D, Bacchiocchi A, Hoyt K, Cheng E, Xu F, Li P, Halaban R, Kluger Y: Detecting copy number status and uncovering subclonal markers in heterogeneous tumor biopsies. BMC Genomics 2011,12(1):230-230. 10.1186\/1471-2164-12-230","journal-title":"BMC Genomics"},{"issue":"9","key":"5737_CR10","doi-asserted-by":"crossref","first-page":"R92","DOI":"10.1186\/gb-2010-11-9-r92","volume":"11","author":"C Yau","year":"2010","unstructured":"Yau C, Mouradov D, Jorissen RN, Colella S, Mirza G, Steers G, Harris A, Ragoussis J, Sieber O, Holmes CC: A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data. Genome Biol 2010,11(9):R92-R92.","journal-title":"Genome Biol"},{"issue":"12","key":"5737_CR11","doi-asserted-by":"publisher","first-page":"4928","DOI":"10.1093\/nar\/gkr014","volume":"39","author":"A Li","year":"2011","unstructured":"Li A, Liu Z, Lezon-Geyda K, Sarkar S, Lannin D, Schulz V, Krop I, Winer E, Harris L, Tuck D: GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays. Nucleic Acids Res 2011,39(12):4928-4941. 10.1093\/nar\/gkr014","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"5737_CR12","first-page":"14","volume":"5","author":"Z Liu","year":"2010","unstructured":"Liu Z, Li A, Schulz V, Chen M, Tuck D: MixHMM: inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cells. PLoS One 2010,5(6):14-14.","journal-title":"PLoS One"},{"issue":"16","key":"5737_CR13","doi-asserted-by":"publisher","first-page":"5365","DOI":"10.1093\/nar\/gkp493","volume":"37","author":"W Sun","year":"2009","unstructured":"Sun W, Wright F, Tang Z, Nordgard SH, Van Loo P, Yu T, Kristensen VN, Perou CM: Integrated study of copy number states and genotype calls using high-density SNP arrays. Nucleic Acids Res 2009,37(16):5365-5377. 10.1093\/nar\/gkp493","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"5737_CR14","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1093\/biostatistics\/kxp045","volume":"11","author":"CD Greenman","year":"2010","unstructured":"Greenman CD, Bignell G, Butler A, Edkins S, Hinton J, Beare D, Swamy S, Santarius T, Chen L, Widaa S: PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data. Biostatistics (Oxford, England) 2010,11(1):164-175. 10.1093\/biostatistics\/kxp045","journal-title":"Biostatistics (Oxford, England)"},{"key":"5737_CR15","doi-asserted-by":"publisher","first-page":"1963","DOI":"10.1093\/bioinformatics\/btl289","volume":"22","author":"W Huber","year":"2006","unstructured":"Huber W, Toedling J, Steinmetz LM: Transcript mapping with high-density oligonucleotide tiling arrays. Bioinformatics (Oxford, England) 2006, 22: 1963-1970. 10.1093\/bioinformatics\/btl289","journal-title":"Bioinformatics (Oxford, England)"},{"key":"5737_CR16","doi-asserted-by":"publisher","first-page":"192","DOI":"10.1186\/1471-2105-13-192","volume":"13","author":"D Mos\u00e9n-Ansorena","year":"2012","unstructured":"Mos\u00e9n-Ansorena D, Rodriguez-Ezpeleta N, Aransay AM: Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data. BMC Bioinformatics 2012, 13: 192. 10.1186\/1471-2105-13-192","journal-title":"BMC Bioinformatics"},{"issue":"11","key":"5737_CR17","doi-asserted-by":"publisher","first-page":"R128","DOI":"10.1186\/gb-2009-10-11-r128","volume":"10","author":"T Popova","year":"2009","unstructured":"Popova T, Mani\u00e9 E, Stoppa-Lyonnet D, Rigaill G, Barillot E, Stern MH: Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays. Genome Biol 2009,10(11):R128-R128. 10.1186\/gb-2009-10-11-r128","journal-title":"Genome Biol"},{"issue":"39","key":"5737_CR18","doi-asserted-by":"publisher","first-page":"16910","DOI":"10.1073\/pnas.1009843107","volume":"107","author":"P Van Loo","year":"2010","unstructured":"Van Loo P, Nordgard SH, Lingj\u00e6rde OC, Russnes HG, Rye IH, Sun W, Weigman VJ, Marynen P, Zetterberg A, Naume B: Allele-specific copy number analysis of tumors. Proc Natl Acad Sci U S A 2010,107(39):16910-16915. 10.1073\/pnas.1009843107","journal-title":"Proc Natl Acad Sci U S A"},{"key":"5737_CR19","doi-asserted-by":"publisher","first-page":"2038","DOI":"10.1093\/bioinformatics\/btr329","volume":"27","author":"AB Olshen","year":"2011","unstructured":"Olshen AB, Bengtsson H, Neuvial P, Spellman PT, Olshen R, Seshan VE: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation. Bioinformatics (Oxford, England) 2011, 27: 2038-2046. 10.1093\/bioinformatics\/btr329","journal-title":"Bioinformatics (Oxford, England)"},{"key":"5737_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/S1076-5670(02)80033-7","volume":"120","author":"X Cufi","year":"2003","unstructured":"Cufi X, Munoz X, Freixenet J, Marti J: A review on image segmentation techniques integrating region and boundary information. Advances in imaging and electron physics 2003, 120: 1-39.","journal-title":"Advances in imaging and electron physics"},{"issue":"6","key":"5737_CR21","doi-asserted-by":"publisher","first-page":"657","DOI":"10.1093\/bioinformatics\/btl646","volume":"23","author":"ES Venkatraman","year":"2007","unstructured":"Venkatraman ES, Olshen AB: A faster circular binary segmentation algorithm for the analysis of array CGH data. Bioinformatics (Oxford, England) 2007,23(6):657-663. 10.1093\/bioinformatics\/btl646","journal-title":"Bioinformatics (Oxford, England)"},{"key":"5737_CR22","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1186\/1471-2105-6-27","volume":"6","author":"F Picard","year":"2005","unstructured":"Picard F, Robin S, Lavielle M, Vaisse C, Daudin J-J: A statistical approach for array CGH data analysis. BMC Bioinformatics 2005, 6: 27. 10.1186\/1471-2105-6-27","journal-title":"BMC Bioinformatics"},{"issue":"10","key":"5737_CR23","doi-asserted-by":"publisher","first-page":"R108","DOI":"10.1186\/gb-2011-12-10-r108","volume":"12","author":"M Rasmussen","year":"2011","unstructured":"Rasmussen M, Sundstrom M, Goransson Kultima H, Botling J, Micke P, Birgisson H, Glimelius B, Isaksson A: Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity. Genome Biol 2011,12(10):R108-R108. 10.1186\/gb-2011-12-10-r108","journal-title":"Genome Biol"},{"issue":"1","key":"5737_CR24","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1002\/jae.659","volume":"18","author":"J Bai","year":"2003","unstructured":"Bai J, Perron P: Computation and analysis of multiple structural change models. Journal of Applied Econometrics 2003,18(1):1-22. 10.1002\/jae.659","journal-title":"Journal of Applied Econometrics"},{"issue":"3","key":"5737_CR25","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1093\/bioinformatics\/btr670","volume":"28","author":"V Boeva","year":"2012","unstructured":"Boeva V, Popova T, Bleakley K, Chiche P, Cappo J, Schleiermacher G, Janoueix-lerosey I, Delattre O, Baril E, Curie I: Control-FREEC: a tool for assessing copy number and allelic con- tent using next generation sequencing data. Bioinformatics (Oxford, England) 2012,28(3):423-425. 10.1093\/bioinformatics\/btr670","journal-title":"Bioinformatics (Oxford, England)"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-84.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-14-84\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-84.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,7,23]],"date-time":"2020-07-23T07:28:22Z","timestamp":1595489302000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-14-84"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,3,5]]},"references-count":25,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,12]]}},"alternative-id":["5737"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-14-84","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,3,5]]},"article-number":"84"}}