{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,13]],"date-time":"2024-06-13T19:18:56Z","timestamp":1718306336183},"reference-count":21,"publisher":"Springer Science and Business Media LLC","issue":"S1","license":[{"start":{"date-parts":[[2013,1,1]],"date-time":"2013-01-01T00:00:00Z","timestamp":1356998400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2013,1]]},"DOI":"10.1186\/1471-2105-14-s1-s2","type":"journal-article","created":{"date-parts":[[2013,1,14]],"date-time":"2013-01-14T13:16:26Z","timestamp":1358169386000},"source":"Crossref","is-referenced-by-count":2,"title":["SymGRASS: a database of sugarcane orthologous genes involved in arbuscular mycorrhiza and root nodule symbiosis"],"prefix":"10.1186","volume":"14","author":[{"given":"Luis Carlos","family":"Belarmino","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Roberta","family":"Lane de Oliveira Silva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nina","family":"da Mota Soares Cavalcanti","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nicolas","family":"Krezdorn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ederson Akio","family":"Kido","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ralf","family":"Horres","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter","family":"Winter","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"G\u00fcnter","family":"Kahl","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ana Maria","family":"Benko-Iseppon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2013,1,14]]},"reference":[{"issue":"7","key":"5576_CR1","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1016\/j.tplants.2011.03.006","volume":"16","author":"F Ercolin","year":"2011","unstructured":"Ercolin F, Reinhardt D: Successful joint ventures of plants: arbuscular mycorrhiza and beyond. Trends Plant Sci. 2011, 16 (7): 356-362. 10.1016\/j.tplants.2011.03.006.","journal-title":"Trends Plant Sci"},{"issue":"3","key":"5576_CR2","doi-asserted-by":"publisher","first-page":"549","DOI":"10.1590\/S0001-37652005000300014","volume":"77","author":"JI Baldani","year":"2005","unstructured":"Baldani JI, Baldani VLD: History on the biological nitrogen fixation research in graminaceous plants: special emphasis on the Brazilian experience. An Acad Bras Cienc. 2005, 77 (3): 549-579. 10.1590\/S0001-37652005000300014.","journal-title":"An Acad Bras Cienc"},{"issue":"5813","key":"5576_CR3","doi-asserted-by":"publisher","first-page":"808","DOI":"10.1126\/science.1137013","volume":"315","author":"J Goldemberg","year":"2007","unstructured":"Goldemberg J: Ethanol for a sustainable energy future. Science. 2007, 315 (5813): 808-810. 10.1126\/science.1137013.","journal-title":"Science"},{"issue":"5-6","key":"5576_CR4","doi-asserted-by":"publisher","first-page":"771","DOI":"10.1016\/S0038-0717(96)00226-X","volume":"29","author":"J D\u00f6bereiner","year":"1997","unstructured":"D\u00f6bereiner J: Biological nitrogen fixation in the tropics: social and economic contributions. Soil Biol Biochem. 1997, 29 (5-6): 771-774. 10.1016\/S0038-0717(96)00226-X.","journal-title":"Soil Biol Biochem"},{"issue":"5-6","key":"5576_CR5","doi-asserted-by":"publisher","first-page":"911","DOI":"10.1016\/S0038-0717(96)00218-0","volume":"29","author":"JI Baldani","year":"1997","unstructured":"Baldani JI, Caruso L, Baldani VLD, Silvia R, D\u00f6bereiner J: Recent advances in BNF with non-legume plants. Soil Biol Biochem. 1997, 29 (5-6): 911-922. 10.1016\/S0038-0717(96)00218-0.","journal-title":"Soil Biol Biochem"},{"issue":"1","key":"5576_CR6","doi-asserted-by":"publisher","first-page":"130","DOI":"10.1007\/s00248-007-9258-6","volume":"55","author":"VS Saravanan","year":"2008","unstructured":"Saravanan VS, Madhaiyan M, Osborne J, Thangaraju M, Sa TM: Ecological occurrence of Gluconacetobacter diazotrophicus and nitrogen-fixing Acetobacteraceae members: their possible role in plant growth promotion. Microb Ecol. 2008, 55 (1): 130-140. 10.1007\/s00248-007-9258-6.","journal-title":"Microb Ecol"},{"key":"5576_CR7","unstructured":"EST database (National Center for Biotechnology Information). [\n                    http:\/\/www.ncbi.nlm.nih.gov\/nucest\n                    \n                  ]"},{"key":"5576_CR8","unstructured":"Sequence Cleaner (Seqclean). [\n                    http:\/\/sourceforge.net\/projects\/seqclean\/\n                    \n                  ]"},{"key":"5576_CR9","unstructured":"TGI Clustering Tool (TGICL v2.1). [\n                    http:\/\/sourceforge.net\/projects\/tgicl\/\n                    \n                  ]"},{"issue":"10","key":"5576_CR10","doi-asserted-by":"publisher","first-page":"1432","DOI":"10.1101\/gr.103846.109","volume":"20","author":"Y Surget-Groba","year":"2010","unstructured":"Surget-Groba Y, Montoya-Burgos JI: Optimization of de novo transcriptome assembly from next-generation sequencing data. Genome Res. 2010, 20 (10): 1432-1440. 10.1101\/gr.103846.109.","journal-title":"Genome Res"},{"key":"5576_CR11","unstructured":"Protein Knowledgebase (UniprotKB). [\n                    http:\/\/www.uniprot.org\n                    \n                  ]"},{"issue":"Database","key":"5576_CR12","doi-asserted-by":"publisher","first-page":"D396","DOI":"10.1093\/nar\/gkn803","volume":"37","author":"D Barrell","year":"2009","unstructured":"Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C, Apweiler R: The GOA database in 2009--an integrated Gene Ontology Annotation resource. Nucleic Acids Res. 2009, 37 (Database): D396-D403. 10.1093\/nar\/gkn803.","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"5576_CR13","doi-asserted-by":"publisher","first-page":"D225","DOI":"10.1093\/nar\/gkq1189","volume":"39","author":"A Marchler-Bauer","year":"2011","unstructured":"Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH: CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 2011, 39 (Database issue): D225-D229.","journal-title":"Nucleic Acids Res"},{"issue":"12","key":"5576_CR14","doi-asserted-by":"publisher","first-page":"2055","DOI":"10.1101\/gr.GR-1325RR","volume":"10","author":"DJ Stekel","year":"2000","unstructured":"Stekel DJ, Git Y, Falciani F: The comparison of gene expression from multiple cDNA libraries. Genome Res. 2000, 10 (12): 2055-2061. 10.1101\/gr.GR-1325RR.","journal-title":"Genome Res"},{"issue":"Database","key":"5576_CR15","doi-asserted-by":"publisher","first-page":"D963","DOI":"10.1093\/nar\/gkn655","volume":"37","author":"R Hammami","year":"2009","unstructured":"Hammami R, Hamida JB, Vergoten G, Fliss Ismail: PhytAMP: a database dedicated to antimicrobial plant peptides. Nucleic Acids Res. 2009, 37 (Database): D963-D968. 10.1093\/nar\/gkn655.","journal-title":"Nucleic Acids Res"},{"key":"5576_CR16","doi-asserted-by":"publisher","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","volume":"5","author":"RC Gentleman","year":"2004","unstructured":"Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004, 5: R80-10.1186\/gb-2004-5-10-r80.","journal-title":"Genome Biol"},{"key":"5576_CR17","volume-title":"Unpublished data","author":"A Priyam","year":"2012","unstructured":"Priyam A, Woodcroft BJ, Wurm Y: SequenceServer: BLAST searching made easy. Unpublished data. 2012"},{"issue":"11","key":"5576_CR18","doi-asserted-by":"publisher","first-page":"1659","DOI":"10.1093\/pcp\/pcn153","volume":"49","author":"M Banba","year":"2008","unstructured":"Banba M, Gutjahr C, Miyao A, Hirochika H, Paszkowski U, Kouchi H, Imaizumi-Anraku H, Divergence of Evolutionary Ways Among Common sym Genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway. Plant Cell Physiol. 2008, 49 (11): 1659-1671. 10.1093\/pcp\/pcn153.","journal-title":"Plant Cell Physiol"},{"issue":"10","key":"5576_CR19","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1016\/S1360-1385(02)02336-1","volume":"7","author":"A Mith\u00f6fer","year":"2002","unstructured":"Mith\u00f6fer A: Suppression of plant defence in rhizobia-legume symbiosis. Trends Plant Sci. 2002, 7 (10): 440-444. 10.1016\/S1360-1385(02)02336-1.","journal-title":"Trends Plant Sci"},{"issue":"1","key":"5576_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s00438-009-0460-8","volume":"282","author":"PL De Hoff","year":"2009","unstructured":"De Hoff PL, Brill LM, Hirsch AM: Plant lectins: the ties that bind in root symbiosis and plant defense. Mol Genet Genomics. 2009, 282 (1): 1-15. 10.1007\/s00438-009-0460-8.","journal-title":"Mol Genet Genomics"},{"issue":"3","key":"5576_CR21","doi-asserted-by":"publisher","first-page":"1179","DOI":"10.1104\/pp.104.037531","volume":"135","author":"MA Graham","year":"2004","unstructured":"Graham MA, Silverstein KAT, Cannon SB, VandenBosch KA: Computational identification and characterization of novel genes from legumes. Plant Physiol. 2004, 135 (3): 1179-1197. 10.1104\/pp.104.037531.","journal-title":"Plant Physiol"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-S1-S2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-14-S1-S2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-14-S1-S2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T10:21:12Z","timestamp":1548152472000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-14-S1-S2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,1]]},"references-count":21,"journal-issue":{"issue":"S1","published-print":{"date-parts":[[2013,1]]}},"alternative-id":["5576"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-14-s1-s2","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,1]]},"article-number":"S2"}}