{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,13]],"date-time":"2025-11-13T12:27:22Z","timestamp":1763036842785},"reference-count":19,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1186\/1471-2105-15-199","type":"journal-article","created":{"date-parts":[[2014,6,19]],"date-time":"2014-06-19T01:16:18Z","timestamp":1403140578000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":16,"title":["Non-specific filtering of beta-distributed data"],"prefix":"10.1186","volume":"15","author":[{"given":"Xinhui","family":"Wang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter W","family":"Laird","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Toshinori","family":"Hinoue","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Susan","family":"Groshen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kimberly D","family":"Siegmund","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2014,6,19]]},"reference":[{"issue":"21","key":"6840_CR1","doi-asserted-by":"publisher","first-page":"9546","DOI":"10.1073\/pnas.0914005107","volume":"107","author":"R Bourgon","year":"2010","unstructured":"Bourgon R, Gentleman R, Huber W: Independent filtering increases detection power for high-throughput experiments. Proc Natl Acad Sci U S A. 2010, 107 (21): 9546-9551.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"19","key":"6840_CR2","doi-asserted-by":"publisher","first-page":"2507","DOI":"10.1093\/bioinformatics\/btm344","volume":"23","author":"Y Saeys","year":"2007","unstructured":"Saeys Y, Inza I, Larranaga P: A review of feature selection techniques in bioinformatics. Bioinformatics. 2007, 23 (19): 2507-2517.","journal-title":"Bioinformatics"},{"issue":"16","key":"6840_CR3","doi-asserted-by":"publisher","first-page":"5198","DOI":"10.1158\/1078-0432.CCR-08-0196","volume":"14","author":"RW Tothill","year":"2008","unstructured":"Tothill RW, Tinker AV, George J, Brown R, Fox SB, Lade S, Johnson DS, Trivett MK, Etemadmoghadam D, Locandro B, Traficante N, Fereday S, Hung JA, Chiew YE, Haviv I, Gertig D, DeFazio A, Bowtell DD: Novel molecular subtypes of serous and endometrioid ovarian cancer linked to. Clin Cancer Res. 2008, 14 (16): 5198-5208.","journal-title":"Clin Cancer Res"},{"key":"6840_CR4","doi-asserted-by":"publisher","first-page":"260","DOI":"10.1186\/1471-2105-10-260","volume":"10","author":"EY Kim","year":"2009","unstructured":"Kim EY, Kim SY, Ashlock D, Nam D: MULTI-K: accurate classification of microarray subtypes using ensemble k-means. BMC Bioinformatics. 2009, 10: 260-","journal-title":"BMC Bioinformatics"},{"key":"6840_CR5","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1186\/1471-2105-9-365","volume":"9","author":"EA Houseman","year":"2008","unstructured":"Houseman EA, Christensen BC, Yeh RF, Marsit CJ, Karagas MR, Wrensch M, Nelson HH, Wiemels J, Zheng S, Wiencke JK, Kelsey KT: Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. BMC Bioinformatics. 2008, 9: 365-","journal-title":"BMC Bioinformatics"},{"key":"6840_CR6","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1186\/1471-2105-13-86","volume":"13","author":"EA Houseman","year":"2012","unstructured":"Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, Wiencke JK, Kelsey KT: DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinformatics. 2012, 13: 86-","journal-title":"BMC Bioinformatics"},{"issue":"8","key":"6840_CR7","doi-asserted-by":"publisher","first-page":"816","DOI":"10.4161\/epi.25430","volume":"8","author":"DC Koestler","year":"2013","unstructured":"Koestler DC, Christensen B, Karagas MR, Marsit CJ, Langevin SM, Kelsey KT, Wiencke JK, Houseman EA: Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis. Epigenetics. 2013, 8 (8): 816-826.","journal-title":"Epigenetics"},{"issue":"7","key":"6840_CR8","doi-asserted-by":"publisher","first-page":"e41361","DOI":"10.1371\/journal.pone.0041361","volume":"7","author":"LE Reinius","year":"2012","unstructured":"Reinius LE, Acevedo N, Joerink M, Pershagen G, Dahlen SE, Greco D, Soderhall C, Scheynius A, Kere J: Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility. PloS one. 2012, 7 (7): e41361-","journal-title":"PloS one"},{"key":"6840_CR9","doi-asserted-by":"publisher","first-page":"510","DOI":"10.1016\/j.ccr.2010.03.017","volume":"17","author":"H Noushmehr","year":"2010","unstructured":"Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, Verhaak RGW, Hoadley KA, Hayes DN, Perou CM, Schmidt HK, Ding L, Wilson RK, Van Den Berg D, Shen H, Bengtsson H, Neuvial P, Cope LM, Buckley J, Herman JG, Baylin SB, Laird PW, Aldape K: Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell. 2010, 17: 510-522.","journal-title":"Cancer Cell"},{"key":"6840_CR10","doi-asserted-by":"publisher","first-page":"787","DOI":"10.1038\/ng1834","volume":"38","author":"DJ Weisenberger","year":"2006","unstructured":"Weisenberger DJ, Siegmund KD, Campan M, Young J, Long TI, Faasse MA, Kang GH, Widschwendter M, Weener D, Buchanan D, Koh H, Simms L, Barker M, Leggett B, Levine J, Kim M, French AJ, Thibodeau SN, Jass J, Haile R, Laird PW: CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet. 2006, 38: 787-793.","journal-title":"Nat Genet"},{"key":"6840_CR11","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1186\/1471-2105-11-587","volume":"11","author":"P Du","year":"2010","unstructured":"Du P, Zhang X, Huang CC, Jafari N, Kibbe WA, Hou L, Lin SM: Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics. 2010, 11: 587-","journal-title":"BMC Bioinformatics"},{"key":"6840_CR12","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1080\/00401706.1993.10484995","volume":"35","author":"DM Rocke","year":"1993","unstructured":"Rocke DM: On the beta transformation family. Technometrics. 1993, 35: 72-81.","journal-title":"Technometrics"},{"issue":"4","key":"6840_CR13","doi-asserted-by":"publisher","first-page":"288","DOI":"10.1016\/j.ygeno.2011.07.007","volume":"98","author":"M Bibikova","year":"2011","unstructured":"Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R: High density DNA methylation array with single CpG site resolution. Genomics. 2011, 98 (4): 288-295.","journal-title":"Genomics"},{"key":"6840_CR14","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1214\/aos\/1176346577","volume":"13","author":"J Hartigan","year":"1985","unstructured":"Hartigan J, Hartigan P: The dip test of unimodality. Ann Stat. 1985, 13: 70-84.","journal-title":"Ann Stat"},{"issue":"7353","key":"6840_CR15","doi-asserted-by":"publisher","first-page":"609","DOI":"10.1038\/nature10166","volume":"474","author":"D Bell","year":"2011","unstructured":"Bell D, Berchuck A, Birrer M, Chien J, Cramer D, Dao F, Dhir R, DiSaia P, Gabra H, Glenn P, Godwin A, Gross J, Hartmann L, Huang M, Huntsman D, Iacocca M, Imielinski M, Kalloger S, Karlan B, Levine D, Mills G, Morrison C, Mutch D, Olvera N, Orsulic S, Park K, Petrelli N, Rabeno B, Rader J, Sikic B, et al: Integrated genomic analyses of ovarian carcinoma. Nature. 2011, 474 (7353): 609-615.","journal-title":"Nature"},{"issue":"7492","key":"6840_CR16","doi-asserted-by":"publisher","first-page":"315","DOI":"10.1038\/nature12965","volume":"507","author":"JN Weinstein","year":"2014","unstructured":"Weinstein JN, Akbani R, Broom BM, Wang W, Verhaak RG, McConkey D, Lerner S, Morgan M, Creighton CJ, Smith C, Kwiatkowski DJ, Cherniack AD, Kim J, Sekhar Pedamallu C, Noble MS, Al-Ahmadie HA, Reuter VE, Rosenberg JE, Bajorin DF, Bochner BH, Solit DB, Koppie T, Robinson B, Gordenin DA, Fargo D, Klimczak LJ, Roberts SA, Au J, Laird PW, Hinoue T, et al: Comprehensive molecular characterization of urothelial bladder carcinoma. Nature. 2014, 507 (7492): 315-322.","journal-title":"Nature"},{"issue":"7","key":"6840_CR17","doi-asserted-by":"publisher","first-page":"e90","DOI":"10.1093\/nar\/gkt090","volume":"41","author":"TJ Triche Jr","year":"2013","unstructured":"Triche TJ, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD: Low-level processing of illumina infinium DNA methylation BeadArrays. Nucleic Acids Res. 2013, 41 (7): e90-","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"6840_CR18","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1093\/bioinformatics\/bts680","volume":"29","author":"AE Teschendorff","year":"2013","unstructured":"Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, Beck S: A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450\u00a0k DNA methylation data. Bioinformatics. 2013, 29 (2): 189-196.","journal-title":"Bioinformatics"},{"issue":"2","key":"6840_CR19","doi-asserted-by":"publisher","first-page":"859","DOI":"10.1172\/JCI70941","volume":"124","author":"S Santagata","year":"2014","unstructured":"Santagata S, Thakkar A, Ergonul A, Wang B, Woo T, Hu R, Harrell JC, McNamara G, Schwede M, Culhane AC, Kindelberger D, Rodig S, Richardson A, Schnitt SJ, Tamimi RM, Ince TA: Taxonomy of breast cancer based on normal cell phenotype predicts outcome. J Clin Invest. 2014, 124 (2): 859-870.","journal-title":"J Clin Invest"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-15-199.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,2]],"date-time":"2021-09-02T10:26:21Z","timestamp":1630578381000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-15-199"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,6,19]]},"references-count":19,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2014,12]]}},"alternative-id":["6840"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-15-199","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,6,19]]},"assertion":[{"value":"3 November 2013","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"12 June 2014","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"19 June 2014","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"199"}}