{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,9]],"date-time":"2026-01-09T12:58:02Z","timestamp":1767963482575,"version":"3.49.0"},"reference-count":63,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1186\/1471-2105-15-255","type":"journal-article","created":{"date-parts":[[2014,7,29]],"date-time":"2014-07-29T01:01:36Z","timestamp":1406595696000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":11,"title":["Inferring the perturbed microRNA regulatory networks from gene expression data using a network propagation based method"],"prefix":"10.1186","volume":"15","author":[{"given":"Ting","family":"Wang","sequence":"first","affiliation":[]},{"given":"Jin","family":"Gu","sequence":"additional","affiliation":[]},{"given":"Yanda","family":"Li","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,7,29]]},"reference":[{"issue":"5543","key":"6523_CR1","doi-asserted-by":"publisher","first-page":"862","DOI":"10.1126\/science.1065329","volume":"294","author":"RC Lee","year":"2001","unstructured":"Lee RC, Ambros V: An extensive class of small RNAs in Caenorhabditis elegans. Science. 2001, 294 (5543): 862-864.","journal-title":"Science"},{"issue":"2","key":"6523_CR2","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1016\/S0092-8674(04)00045-5","volume":"116","author":"DP Bartel","year":"2004","unstructured":"Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004, 116 (2): 281-297.","journal-title":"Cell"},{"issue":"4","key":"6523_CR3","doi-asserted-by":"publisher","first-page":"1131","DOI":"10.2353\/ajpath.2009.080794","volume":"174","author":"R Visone","year":"2009","unstructured":"Visone R, Croce CM: MiRNAs and cancer. Am J Pathol. 2009, 174 (4): 1131-1138.","journal-title":"Am J Pathol"},{"issue":"9","key":"6523_CR4","doi-asserted-by":"crossref","first-page":"597","DOI":"10.1038\/nrg2843","volume":"11","author":"J Krol","year":"2010","unstructured":"Krol J, Loedige I, Filipowicz W: The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet. 2010, 11 (9): 597-610.","journal-title":"Nat Rev Genet"},{"issue":"12","key":"6523_CR5","doi-asserted-by":"publisher","first-page":"8750","DOI":"10.1074\/jbc.M112.414128","volume":"288","author":"C Korner","year":"2013","unstructured":"Korner C, Keklikoglou I, Bender C, Worner A, Munstermann E, Wiemann S: MicroRNA-31 sensitizes human breast cells to apoptosis by direct targeting of protein kinase C epsilon (PKCepsilon). J Biol Chem. 2013, 288 (12): 8750-8761.","journal-title":"J Biol Chem"},{"issue":"2","key":"6523_CR6","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1002\/hep.26369","volume":"58","author":"H Xia","year":"2013","unstructured":"Xia H, Ooi LL, Hui KM: MicroRNA-216a\/217-induced epithelial-mesenchymal transition targets PTEN and SMAD7 to promote drug resistance and recurrence of liver cancer. Hepatology. 2013, 58 (2): 629-641.","journal-title":"Hepatology"},{"issue":"13","key":"6523_CR7","doi-asserted-by":"publisher","first-page":"i89","DOI":"10.1093\/bioinformatics\/btt231","volume":"29","author":"HS Le","year":"2013","unstructured":"Le HS, Bar-Joseph Z: Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation. Bioinformatics. 2013, 29 (13): i89-i97.","journal-title":"Bioinformatics"},{"issue":"1","key":"6523_CR8","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1016\/j.cell.2004.12.035","volume":"120","author":"BP Lewis","year":"2005","unstructured":"Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005, 120 (1): 15-20.","journal-title":"Cell"},{"issue":"5","key":"6523_CR9","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1038\/ng1536","volume":"37","author":"A Krek","year":"2005","unstructured":"Krek A, Gr\u00fcn D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N: Combinatorial microRNA target predictions. Nat Genet. 2005, 37 (5): 495-500.","journal-title":"Nat Genet"},{"issue":"1","key":"6523_CR10","doi-asserted-by":"publisher","first-page":"R1","DOI":"10.1186\/gb-2003-5-1-r1","volume":"5","author":"AJ Enright","year":"2003","unstructured":"Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS: MicroRNA targets in Drosophila. Genome Biol. 2003, 5 (1): R1-","journal-title":"Genome Biol"},{"issue":"43","key":"6523_CR11","doi-asserted-by":"publisher","first-page":"15545","DOI":"10.1073\/pnas.0506580102","volume":"102","author":"A Subramanian","year":"2005","unstructured":"Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005, 102 (43): 15545-15550.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"6523_CR12","doi-asserted-by":"publisher","first-page":"e1989","DOI":"10.1371\/journal.pone.0001989","volume":"3","author":"C Cheng","year":"2008","unstructured":"Cheng C, Li LM: Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS One. 2008, 3 (4): e1989-","journal-title":"PLoS One"},{"issue":"3","key":"6523_CR13","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1007\/s00335-005-0066-3","volume":"17","author":"C Sevignani","year":"2006","unstructured":"Sevignani C, Calin GA, Siracusa LD, Croce CM: Mammalian microRNAs: a small world for fine-tuning gene expression. Mamm Genome. 2006, 17 (3): 189-202.","journal-title":"Mamm Genome"},{"issue":"2","key":"6523_CR14","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1016\/j.conb.2009.05.015","volume":"19","author":"G Schratt","year":"2009","unstructured":"Schratt G: Fine-tuning neural gene expression with microRNAs. Curr Opin Neurobiol. 2009, 19 (2): 213-219.","journal-title":"Curr Opin Neurobiol"},{"issue":"3","key":"6523_CR15","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1016\/j.cell.2012.04.005","volume":"149","author":"MS Ebert","year":"2012","unstructured":"Ebert MS, Sharp PA: Roles for microRNAs in conferring robustness to biological processes. Cell. 2012, 149 (3): 515-524.","journal-title":"Cell"},{"issue":"4","key":"6523_CR16","doi-asserted-by":"publisher","first-page":"612","DOI":"10.1093\/bib\/bbs083","volume":"15","author":"J Roy","year":"2014","unstructured":"Roy J, Winter C, Isik Z, Schroeder M: Network information improves cancer outcome prediction. Brief Bioinform. 2014, 15 (4): 612-625.","journal-title":"Brief Bioinform"},{"key":"6523_CR17","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1186\/1471-2105-6-233","volume":"6","author":"JL Morrison","year":"2005","unstructured":"Morrison JL, Breitling R, Higham DJ, Gilbert DR: GeneRank: using search engine technology for the analysis of microarray experiments. BMC Bioinformatics. 2005, 6: 233-","journal-title":"BMC Bioinformatics"},{"key":"6523_CR18","first-page":"653","volume-title":"Automatic multimedia cross-modal correlation discovery","author":"JY Pan","year":"2004","unstructured":"Pan JY, Yanh HJ, Faloutsos C, Duygulu P: Proc 10th ACM SIGKDD Int Conf Knowl Discovery Data Mining. Automatic multimedia cross-modal correlation discovery. 2004, 653-658."},{"issue":"7","key":"6523_CR19","doi-asserted-by":"publisher","first-page":"2574","DOI":"10.1109\/TIP.2013.2253479","volume":"22","author":"B Ham","year":"2013","unstructured":"Ham B, Min D, Sohn K: A generalized random walk with restart and its application in depth up-sampling and interactive segmentation. IEEE Trans Image Process. 2013, 22 (7): 2574-2588.","journal-title":"IEEE Trans Image Process"},{"issue":"1","key":"6523_CR20","doi-asserted-by":"publisher","first-page":"459","DOI":"10.1023\/A:1018929719710","volume":"3","author":"RR Lutz","year":"1997","unstructured":"Lutz RR, Woodhouse RM: Requirements analysis using forward and backward search. Ann Softw Eng. 1997, 3 (1): 459-475.","journal-title":"Ann Softw Eng"},{"key":"6523_CR21","unstructured":"Network propagation based method (NP-method). [http:\/\/bioinfo.au.tsinghua.edu.cn\/software\/np\/]"},{"issue":"Database issue","key":"6523_CR22","doi-asserted-by":"publisher","first-page":"D885","DOI":"10.1093\/nar\/gkn764","volume":"37","author":"T Barrett","year":"2009","unstructured":"Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R: NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res. 2009, 37 (Database issue): D885-D890.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"6523_CR23","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1093\/bioinformatics\/19.2.185","volume":"19","author":"BM Bolstad","year":"2003","unstructured":"Bolstad BM, Irizarry RA, Astrand M, Speed TP: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003, 19 (2): 185-193.","journal-title":"Bioinformatics"},{"issue":"Database issue","key":"6523_CR24","doi-asserted-by":"publisher","first-page":"D52","DOI":"10.1093\/nar\/gkq1237","volume":"39","author":"D Maglott","year":"2011","unstructured":"Maglott D, Ostell J, Pruitt KD, Tatusova T: Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res. 2011, 39 (Database issue): D52-D57.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"6523_CR25","doi-asserted-by":"publisher","first-page":"371","DOI":"10.1038\/ng.786","volume":"43","author":"S Obad","year":"2011","unstructured":"Obad S, dos Santos CO, Petri A, Heidenblad M, Broom O, Ruse C, Fu C, Lindow M, Stenvang J, Straarup EM, Hansen HF, Koch T, Pappin D, Hannon GJ, Kauppinen S: Silencing of microRNA families by seed-targeting tiny LNAs. Nat Genet. 2011, 43 (4): 371-378.","journal-title":"Nat Genet"},{"issue":"52","key":"6523_CR26","doi-asserted-by":"publisher","first-page":"21075","DOI":"10.1073\/pnas.1118922109","volume":"108","author":"RJ Frost","year":"2011","unstructured":"Frost RJ, Olson EN: Control of glucose homeostasis and insulin sensitivity by the Let-7 family of microRNAs. Proc Natl Acad Sci U S A. 2011, 108 (52): 21075-21080.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"12","key":"6523_CR27","doi-asserted-by":"publisher","first-page":"1135","DOI":"10.1038\/nbt1209-1135","volume":"27","author":"WS Noble","year":"2009","unstructured":"Noble WS: How does multiple testing correction work?. Nat Biotechnol. 2009, 27 (12): 1135-1137.","journal-title":"Nat Biotechnol"},{"key":"6523_CR28","doi-asserted-by":"publisher","first-page":"405","DOI":"10.1186\/1471-2164-13-405","volume":"13","author":"LA Bovolenta","year":"2012","unstructured":"Bovolenta LA, Acencio ML, Lemke N: HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions. BMC Genomics. 2012, 13: 405-","journal-title":"BMC Genomics"},{"issue":"Database issue","key":"6523_CR29","doi-asserted-by":"publisher","first-page":"D561","DOI":"10.1093\/nar\/gkq973","volume":"39","author":"D Szklarczyk","year":"2011","unstructured":"Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, Mering CV: The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 2011, 39 (Database issue): D561-D568.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"6523_CR30","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1136\/ebnurs-2012-100524","volume":"15","author":"DA Forbes","year":"2012","unstructured":"Forbes DA: What is a p value and what does it mean?. Evid Based Nurs. 2012, 15 (2): 34-","journal-title":"Evid Based Nurs"},{"issue":"5","key":"6523_CR31","doi-asserted-by":"publisher","first-page":"654","DOI":"10.1161\/CIRCULATIONAHA.105.594929","volume":"115","author":"KH Zou","year":"2007","unstructured":"Zou KH, O\u2019Malley AJ, Mauri L: Receiver-operating characteristic analysis for evaluating diagnostic tests and predictive models. Circulation. 2007, 115 (5): 654-657.","journal-title":"Circulation"},{"issue":"Database issue","key":"6523_CR32","doi-asserted-by":"publisher","first-page":"D98","DOI":"10.1093\/nar\/gkn714","volume":"37","author":"Q Jiang","year":"2009","unstructured":"Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y: miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res. 2009, 37 (Database issue): D98-D104.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"6523_CR33","doi-asserted-by":"publisher","first-page":"e8836","DOI":"10.1371\/journal.pone.0008836","volume":"5","author":"LH Gregersen","year":"2010","unstructured":"Gregersen LH, Jacobsen AB, Frankel LB, Wen J, Krogh A, Lund AH: MicroRNA-145 targets YES and STAT1 in colon cancer cells. PLoS One. 2010, 5 (1): e8836-","journal-title":"PLoS One"},{"issue":"7","key":"6523_CR34","doi-asserted-by":"publisher","first-page":"1073","DOI":"10.1038\/onc.2009.395","volume":"29","author":"MS Ostenfeld","year":"2010","unstructured":"Ostenfeld MS, Bramsen JB, Lamy P, Villadsen SB, Fristrup N, Sorensen KD, Ulhoi B, Borre M, Kjems J, Dyrskjot L, Orntoft TF: miR-145 induces caspase-dependent and -independent cell death in urothelial cancer cell lines with targeting of an expression signature present in Ta bladder tumors. Oncogene. 2010, 29 (7): 1073-1084.","journal-title":"Oncogene"},{"issue":"12","key":"6523_CR35","doi-asserted-by":"publisher","first-page":"2804","DOI":"10.1002\/ijc.25284","volume":"127","author":"M Kano","year":"2010","unstructured":"Kano M, Seki N, Kikkawa N, Fujimura L, Hoshino I, Akutsu Y, Chiyomaru T, Enokida H, Nakagawa M, Matsubara H: miR-145, miR-133a and miR-133b: tumor-suppressive miRNAs target FSCN1 in esophageal squamous cell carcinoma. Int J Cancer. 2010, 127 (12): 2804-2814.","journal-title":"Int J Cancer"},{"issue":"Database issue","key":"6523_CR36","doi-asserted-by":"publisher","first-page":"D163","DOI":"10.1093\/nar\/gkq1107","volume":"39","author":"SD Hsu","year":"2011","unstructured":"Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, Tsai WT, Chen GZ, Lee CJ, Chiu CM, Chien CH, Wu MC, Huang CY, Tsou AP, Huang HD: miRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Res. 2011, 39 (Database issue): D163-D169.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"6523_CR37","doi-asserted-by":"crossref","first-page":"219","DOI":"10.3892\/ijo.2012.1707","volume":"42","author":"B Xiong","year":"2013","unstructured":"Xiong B, Cheng Y, Ma L, Zhang C: MiR-21 regulates biological behavior through the PTEN\/PI-3\u00a0K\/Akt signaling pathway in human colorectal cancer cells. Int J Oncol. 2013, 42 (1): 219-228.","journal-title":"Int J Oncol"},{"issue":"6","key":"6523_CR38","doi-asserted-by":"crossref","first-page":"1290","DOI":"10.3892\/ol.2012.896","volume":"4","author":"X Qin","year":"2012","unstructured":"Qin X, Yan L, Zhao X, Li C, Fu Y: microRNA-21 overexpression contributes to cell proliferation by targeting PTEN in endometrioid endometrial cancer. Oncol Lett. 2012, 4 (6): 1290-1296.","journal-title":"Oncol Lett"},{"issue":"6","key":"6523_CR39","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1016\/j.ccr.2005.05.018","volume":"7","author":"P Michl","year":"2005","unstructured":"Michl P, Ramjaun AR, Pardo OE, Warne PH, Wagner M, Poulsom R, D\u2019Arrigo C, Ryder K, Menke A, Gress T, Downward J: CUTL1 is a target of TGF(beta) signaling that enhances cancer cell motility and invasiveness. Cancer Cell. 2005, 7 (6): 521-532.","journal-title":"Cancer Cell"},{"issue":"8","key":"6523_CR40","doi-asserted-by":"publisher","first-page":"1101","DOI":"10.1136\/gut.2009.189720","volume":"59","author":"S Ripka","year":"2010","unstructured":"Ripka S, Neesse A, Riedel J, Bug E, Aigner A, Poulsom R, Fulda S, Neoptolemos J, Greenhalf W, Barth P, Gress TM, Michl P: CUX1: target of Akt signalling and mediator of resistance to apoptosis in pancreatic cancer. Gut. 2010, 59 (8): 1101-1110.","journal-title":"Gut"},{"issue":"3","key":"6523_CR41","doi-asserted-by":"publisher","first-page":"519","DOI":"10.1007\/s11060-011-0706-2","volume":"106","author":"S Takahashi","year":"2012","unstructured":"Takahashi S, Fusaki N, Ohta S, Iwahori Y, Iizuka Y, Inagawa K, Kawakami Y, Yoshida K, Toda M: Downregulation of KIF23 suppresses glioma proliferation. J Neurooncol. 2012, 106 (3): 519-529.","journal-title":"J Neurooncol"},{"issue":"5","key":"6523_CR42","doi-asserted-by":"publisher","first-page":"e63187","DOI":"10.1371\/journal.pone.0063187","volume":"8","author":"M Fischer","year":"2013","unstructured":"Fischer M, Grundke I, Sohr S, Quaas M, Hoffmann S, Knorck A, Gumhold C, Rother K: p53 and cell cycle dependent transcription of kinesin family member 23 (KIF23) is controlled via a CHR promoter element bound by DREAM and MMB complexes. PLoS One. 2013, 8 (5): e63187-","journal-title":"PLoS One"},{"key":"6523_CR43","doi-asserted-by":"publisher","first-page":"711","DOI":"10.1038\/msb.2013.68","volume":"9","author":"J Hausser","year":"2013","unstructured":"Hausser J, Syed AP, Selevsek N, van Nimwegen E, Jaskiewicz L, Aebersold R, Zavolan M: Timescales and bottlenecks in miRNA-dependent gene regulation. Mol Syst Biol. 2013, 9: 711-","journal-title":"Mol Syst Biol"},{"issue":"5","key":"6523_CR44","doi-asserted-by":"publisher","first-page":"1646","DOI":"10.1093\/nar\/gkl068","volume":"34","author":"X Wang","year":"2006","unstructured":"Wang X, Wang X: Systematic identification of microRNA functions by combining target prediction and expression profiling. Nucleic Acids Res. 2006, 34 (5): 1646-1652.","journal-title":"Nucleic Acids Res"},{"issue":"5","key":"6523_CR45","doi-asserted-by":"publisher","first-page":"1032","DOI":"10.1261\/rna.1851510","volume":"16","author":"S Bail","year":"2010","unstructured":"Bail S, Swerdel M, Liu H, Jiao X, Goff LA, Hart RP, Kiledjian M: Differential regulation of microRNA stability. RNA. 2010, 16 (5): 1032-1039.","journal-title":"RNA"},{"issue":"3","key":"6523_CR46","doi-asserted-by":"publisher","first-page":"715","DOI":"10.1111\/j.1432-1033.1991.tb16426.x","volume":"202","author":"R Jaenicke","year":"1991","unstructured":"Jaenicke R: Protein stability and molecular adaptation to extreme conditions. Eur J Biochem. 1991, 202 (3): 715-728.","journal-title":"Eur J Biochem"},{"issue":"2","key":"6523_CR47","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1136\/gut.2011.239145","volume":"61","author":"F Zheng","year":"2012","unstructured":"Zheng F, Liao YJ, Cai MY, Liu YH, Liu TH, Chen SP, Bian XW, Guan XY, Lin MC, Zeng YX, Kung HF, Xie D: The putative tumour suppressor microRNA-124 modulates hepatocellular carcinoma cell aggressiveness by repressing ROCK2 and EZH2. Gut. 2012, 61 (2): 278-289.","journal-title":"Gut"},{"issue":"5","key":"6523_CR48","doi-asserted-by":"publisher","first-page":"766","DOI":"10.1093\/carcin\/bgp250","volume":"31","author":"M Furuta","year":"2010","unstructured":"Furuta M, Kozaki KI, Tanaka S, Arii S, Imoto I, Inazawa J: miR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma. Carcinogenesis. 2010, 31 (5): 766-776.","journal-title":"Carcinogenesis"},{"issue":"9","key":"6523_CR49","doi-asserted-by":"publisher","first-page":"R183","DOI":"10.1186\/gb-2007-8-9-r183","volume":"8","author":"W da Huang","year":"2007","unstructured":"da Huang W, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA: The DAVID gene functional classification tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol. 2007, 8 (9): R183-","journal-title":"Genome Biol"},{"issue":"4","key":"6523_CR50","doi-asserted-by":"publisher","first-page":"1107","DOI":"10.1158\/1078-0432.CCR-06-1633","volume":"13","author":"Y Hong","year":"2007","unstructured":"Hong Y, Ho KS, Eu KW, Cheah PY: A susceptibility gene set for early onset colorectal cancer that integrates diverse signaling pathways: implication for tumorigenesis. Clin Cancer Res. 2007, 13 (4): 1107-1114.","journal-title":"Clin Cancer Res"},{"key":"6523_CR51","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1186\/1471-2105-12-77","volume":"12","author":"X Robin","year":"2011","unstructured":"Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Muller M: pROC: an open-source package for R and S\u2009+\u2009to analyze and compare ROC curves. BMC Bioinformatics. 2011, 12: 77-","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"6523_CR52","doi-asserted-by":"publisher","first-page":"540","DOI":"10.1158\/2159-8290.CD-11-0267","volume":"2","author":"S Jahid","year":"2012","unstructured":"Jahid S, Sun J, Edwards RA, Dizon D, Panarelli NC, Milsom JW, Sikandar SS, Gumus ZH, Lipkin SM: miR-23a promotes the transition from indolent to invasive colorectal cancer. Cancer Discov. 2012, 2 (6): 540-553.","journal-title":"Cancer Discov"},{"issue":"2","key":"6523_CR53","doi-asserted-by":"publisher","first-page":"352","DOI":"10.1038\/bjc.2012.251","volume":"107","author":"J Zhang","year":"2012","unstructured":"Zhang J, Xiao Z, Lai D, Sun J, He C, Chu Z, Ye H, Chen S, Wang J: miR-21, miR-17 and miR-19a induced by phosphatase of regenerating liver-3 promote the proliferation and metastasis of colon cancer. Br J Cancer. 2012, 107 (2): 352-359.","journal-title":"Br J Cancer"},{"issue":"5","key":"6523_CR54","doi-asserted-by":"publisher","first-page":"1749","DOI":"10.1053\/j.gastro.2011.07.038","volume":"141","author":"K Bakirtzi","year":"2011","unstructured":"Bakirtzi K, Hatziapostolou M, Karagiannides I, Polytarchou C, Jaeger S, Iliopoulos D, Pothoulakis C: Neurotensin signaling activates microRNAs-21 and \u2212155 and Akt, promotes tumor growth in mice, and is increased in human colon tumors. Gastroenterology. 2011, 141 (5): 1749-1761. e1741","journal-title":"Gastroenterology"},{"issue":"2","key":"6523_CR55","doi-asserted-by":"publisher","first-page":"1037","DOI":"10.1007\/s12032-011-9975-z","volume":"29","author":"L Zhu","year":"2012","unstructured":"Zhu L, Chen H, Zhou D, Li D, Bai R, Zheng S, Ge W: MicroRNA-9 up-regulation is involved in colorectal cancer metastasis via promoting cell motility. Med Oncol. 2012, 29 (2): 1037-1043.","journal-title":"Med Oncol"},{"issue":"9","key":"6523_CR56","doi-asserted-by":"publisher","first-page":"1941","DOI":"10.1111\/j.1582-4934.2010.01170.x","volume":"15","author":"YL Ma","year":"2011","unstructured":"Ma YL, Zhang P, Wang F, Moyer MP, Yang JJ, Liu ZH, Peng JY, Chen HQ, Zhou YK, Liu WJ, Qin HL: Human embryonic stem cells and metastatic colorectal cancer cells shared the common endogenous human microRNA-26b. J Cell Mol Med. 2011, 15 (9): 1941-1954.","journal-title":"J Cell Mol Med"},{"issue":"2","key":"6523_CR57","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1016\/j.bbagrm.2012.11.006","volume":"1829","author":"Y Yin","year":"2013","unstructured":"Yin Y, Yan ZP, Lu NN, Xu Q, He J, Qian X, Yu J, Guan X, Jiang BH, Liu LZ: Downregulation of miR-145 associated with cancer progression and VEGF transcriptional activation by targeting N-RAS and IRS1. Biochim Biophys Acta. 2013, 1829 (2): 239-247.","journal-title":"Biochim Biophys Acta"},{"issue":"8","key":"6523_CR58","doi-asserted-by":"publisher","first-page":"1522","DOI":"10.1093\/carcin\/bgs166","volume":"33","author":"IP Yang","year":"2012","unstructured":"Yang IP, Tsai HL, Hou MF, Chen KC, Tsai PC, Huang SW, Chou WW, Wang JY, Juo SH: MicroRNA-93 inhibits tumor growth and early relapse of human colorectal cancer by affecting genes involved in the cell cycle. Carcinogenesis. 2012, 33 (8): 1522-1530.","journal-title":"Carcinogenesis"},{"key":"6523_CR59","doi-asserted-by":"publisher","first-page":"554","DOI":"10.1038\/ncomms1555","volume":"2","author":"H Zhang","year":"2011","unstructured":"Zhang H, Hao Y, Yang J, Zhou Y, Li J, Yin S, Sun C, Ma M, Huang Y, Xi JJ: Genome-wide functional screening of miR-23b as a pleiotropic modulator suppressing cancer metastasis. Nat Commun. 2011, 2: 554-","journal-title":"Nat Commun"},{"issue":"27","key":"6523_CR60","doi-asserted-by":"publisher","first-page":"28458","DOI":"10.1074\/jbc.M313277200","volume":"279","author":"BC Kim","year":"2004","unstructured":"Kim BC, van Gelder H, Kim TA, Lee HJ, Baik KG, Chun HH, Lee DA, Choi KS, Kim SJ: Activin receptor-like kinase-7 induces apoptosis through activation of MAPKs in a Smad3-dependent mechanism in hepatoma cells. J Biol Chem. 2004, 279 (27): 28458-28465.","journal-title":"J Biol Chem"},{"issue":"10","key":"6523_CR61","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1038\/nrd2132","volume":"5","author":"P Imming","year":"2006","unstructured":"Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006, 5 (10): 821-834.","journal-title":"Nat Rev Drug Discov"},{"issue":"7","key":"6523_CR62","doi-asserted-by":"publisher","first-page":"679","DOI":"10.1038\/nbt.2284","volume":"30","author":"B Al-Lazikani","year":"2012","unstructured":"Al-Lazikani B, Banerji U, Workman P: Combinatorial drug therapy for cancer in the post-genomic era. Nat Biotechnol. 2012, 30 (7): 679-692.","journal-title":"Nat Biotechnol"},{"issue":"3","key":"6523_CR63","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1038\/tpj.2011.53","volume":"12","author":"D Sanoudou","year":"2012","unstructured":"Sanoudou D, Mountzios G, Arvanitis DA, Pectasides D: Array-based pharmacogenomics of molecular-targeted therapies in oncology. Pharmacogenomics J. 2012, 12 (3): 185-196.","journal-title":"Pharmacogenomics J"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-15-255.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,2]],"date-time":"2021-09-02T04:58:29Z","timestamp":1630558709000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-15-255"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,7,29]]},"references-count":63,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2014,12]]}},"alternative-id":["6523"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-15-255","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,7,29]]},"assertion":[{"value":"13 February 2014","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 July 2014","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 July 2014","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"255"}}