{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,4,3]],"date-time":"2022-04-03T11:33:23Z","timestamp":1648985603809},"reference-count":18,"publisher":"Springer Science and Business Media LLC","issue":"S11","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1186\/1471-2105-15-s11-s1","type":"journal-article","created":{"date-parts":[[2014,10,21]],"date-time":"2014-10-21T11:18:35Z","timestamp":1413890315000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["SLDR: a computational technique to identify novel genetic regulatory relationships"],"prefix":"10.1186","volume":"15","author":[{"given":"Zongliang","family":"Yue","sequence":"first","affiliation":[]},{"given":"Ping","family":"Wan","sequence":"additional","affiliation":[]},{"given":"Hui","family":"Huang","sequence":"additional","affiliation":[]},{"given":"Zhan","family":"Xie","sequence":"additional","affiliation":[]},{"given":"Jake Y","family":"Chen","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,10,21]]},"reference":[{"issue":"11","key":"6648_CR1","doi-asserted-by":"publisher","first-page":"5316","DOI":"10.1091\/mbc.E05-01-0084","volume":"16","author":"CG James","year":"2005","unstructured":"James CG, Appleton CT, Ulici V, Underhill TM, Beier F: Microarray analyses of gene expression during chondrocyte differentiation identifies novel regulators of hypertrophy. Molecular biology of the cell. 2005, 16 (11): 5316-5333. 10.1091\/mbc.E05-01-0084.","journal-title":"Molecular biology of the cell"},{"key":"6648_CR2","doi-asserted-by":"publisher","first-page":"264","DOI":"10.1186\/1471-2164-12-264","volume":"12","author":"WW Lorenz","year":"2011","unstructured":"Lorenz WW, Alba R, Yu YS, Bordeaux JM, Simoes M, Dean JF: Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). BMC genomics. 2011, 12: 264-10.1186\/1471-2164-12-264.","journal-title":"BMC genomics"},{"issue":"26","key":"6648_CR3","doi-asserted-by":"publisher","first-page":"16893","DOI":"10.1073\/pnas.252638199","volume":"99","author":"W Wang","year":"2002","unstructured":"Wang W, Cherry JM, Botstein D, Li H: A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 2002, 99 (26): 16893-16898. 10.1073\/pnas.252638199.","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"issue":"1","key":"6648_CR4","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1038\/nrg2918","volume":"12","author":"AL Barabasi","year":"2011","unstructured":"Barabasi AL, Gulbahce N, Loscalzo J: Network medicine: a network-based approach to human disease. Nature reviews Genetics. 2011, 12 (1): 56-68. 10.1038\/nrg2918.","journal-title":"Nature reviews Genetics"},{"issue":"24","key":"6648_CR5","doi-asserted-by":"publisher","first-page":"3895","DOI":"10.1016\/j.febslet.2009.11.011","volume":"583","author":"M Snyder","year":"2009","unstructured":"Snyder M, Gallagher JE: Systems biology from a yeast omics perspective. FEBS letters. 2009, 583 (24): 3895-3899. 10.1016\/j.febslet.2009.11.011.","journal-title":"FEBS letters"},{"issue":"6","key":"6648_CR6","doi-asserted-by":"publisher","first-page":"1277","DOI":"10.1083\/jcb.133.6.1277","volume":"133","author":"HV Goodson","year":"1996","unstructured":"Goodson HV, Anderson BL: Synthetic Lethality Screen Identifies a Novel Yeast. The Journal of Cell Biology. 1996, 133 (6): 1277-1291. 10.1083\/jcb.133.6.1277.","journal-title":"The Journal of Cell Biology"},{"key":"6648_CR7","unstructured":"Landt Stephen G, Marinov Georgi K, Anshul Kundaje, Pouya Kheradpour: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Cold Spring Harbor Laboratory Press. 2012, 1813-1831. 22"},{"key":"6648_CR8","first-page":"367","volume":"11","author":"J Chen","year":"2006","unstructured":"Chen J, Shen C: MINING ALZHEIMER DISEASE RELEVANT PROTEINS FROM INTEGRATED PROTEIN INTERACTOME DATA. Pacific Symposium on Biocomputing. 2006, 11: 367-378.","journal-title":"Pacific Symposium on Biocomputing"},{"issue":"5","key":"6648_CR9","doi-asserted-by":"publisher","first-page":"803","DOI":"10.1101\/gr.175701","volume":"11","author":"RF Yeh","year":"2001","unstructured":"Yeh RF, Lim LP, Burge CB: Computational inference of homologous gene structures in the human genome. Genome research. 2001, 11 (5): 803-816. 10.1101\/gr.175701.","journal-title":"Genome research"},{"key":"6648_CR10","doi-asserted-by":"crossref","first-page":"986","DOI":"10.1101\/gr.7.10.986","volume":"7","author":"S Audic","year":"1997","unstructured":"Audic S, Claverie J-M: The Significance of Digital Gene Expression Profiles. Genome research. 1997, 7: 986-995.","journal-title":"Genome research"},{"issue":"3","key":"6648_CR11","first-page":"299","volume":"9","author":"MGM Gerhard","year":"1993","unstructured":"Gerhard MGM: A system for pattern matching applications on biosequences. Comput Appl Biosci. 1993, 9 (3): 299-314.","journal-title":"Comput Appl Biosci"},{"issue":"3","key":"6648_CR12","first-page":"325","volume":"10","author":"N Huang","year":"2007","unstructured":"Huang N, Jacobson MP: Physics-based methods for studying protein-ligand interactions. Current Opinion in Drug Discovery & Development. 2007, 10 (3): 325-331.","journal-title":"Current Opinion in Drug Discovery & Development"},{"key":"6648_CR13","doi-asserted-by":"crossref","unstructured":"Wan P, Yue Z, Xie Z, Gao Q, Yu M, Yang Z, Huang J: Mechanisms of Radiation Resistance in Deinococcus radiodurans R1 Revealed by the Reconstruction of Gene Regulatory Network Using Bayesian Network Approach. J Proteomics Bioinform. 2013, 6 (7):","DOI":"10.4172\/jpb.S6-007"},{"issue":"6","key":"6648_CR14","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1016\/j.cell.2010.11.021","volume":"143","author":"S van Wageningen","year":"2010","unstructured":"van Wageningen S, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, de Castro IJ, van Leenen D, Groot Koerkamp MJ, Ko CW, Miles AJ: Functional overlap and regulatory links shape genetic interactions between signaling pathways. Cell. 2010, 143 (6): 991-1004. 10.1016\/j.cell.2010.11.021.","journal-title":"Cell"},{"issue":"5874","key":"6648_CR15","doi-asserted-by":"publisher","first-page":"362","DOI":"10.1126\/science.1150021","volume":"320","author":"ME Hillenmeyer","year":"2008","unstructured":"Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D: The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science. 2008, 320 (5874): 362-365. 10.1126\/science.1150021.","journal-title":"Science"},{"issue":"8","key":"6648_CR16","doi-asserted-by":"publisher","first-page":"1091","DOI":"10.1093\/bioinformatics\/btp101","volume":"25","author":"G Bindea","year":"2009","unstructured":"Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, Fridman W-H, Pag\u00e8s F, Trajanoski Z, Galon J: ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics. 2009, 25 (8): 1091-1093. 10.1093\/bioinformatics\/btp101.","journal-title":"Bioinformatics"},{"issue":"Database","key":"6648_CR17","first-page":"10","volume":"33","author":"UG ldener","year":"2005","unstructured":"ldener UG, tter MMn, ller GK, Strack N, Helden Jv, Lemer C, Richelles J, Wodak SJ, Garc\u00eda-Mart\u00ednez J, Pe\u00e9rez-Ort\u00edn3 JE: CYGD: the Comprehensive Yeast Genome Database. Nucleic acids research. 2005, 33 (Database): 10-1093.","journal-title":"Nucleic acids research"},{"issue":"8","key":"6648_CR18","doi-asserted-by":"publisher","first-page":"1040","DOI":"10.1093\/bioinformatics\/btm057","volume":"23","author":"A Barsky","year":"2007","unstructured":"Barsky A, Gardy JL, Hancock REW, Munzner T: Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. Bioinformatics. 2007, 23 (8): 1040-1042. 10.1093\/bioinformatics\/btm057.","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-15-S11-S1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,2]],"date-time":"2021-09-02T19:06:41Z","timestamp":1630609601000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-15-S11-S1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,10,21]]},"references-count":18,"journal-issue":{"issue":"S11","published-print":{"date-parts":[[2014,12]]}},"alternative-id":["6648"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-15-s11-s1","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,10,21]]},"assertion":[{"value":"21 October 2014","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"S1"}}