{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,18]],"date-time":"2026-03-18T22:23:07Z","timestamp":1773872587927,"version":"3.50.1"},"reference-count":46,"publisher":"Springer Science and Business Media LLC","issue":"S6","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2014,5]]},"DOI":"10.1186\/1471-2105-15-s6-s4","type":"journal-article","created":{"date-parts":[[2014,5,16]],"date-time":"2014-05-16T09:28:11Z","timestamp":1400232491000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":39,"title":["Furby: fuzzy force-directed bicluster visualization"],"prefix":"10.1186","volume":"15","author":[{"given":"Marc","family":"Streit","sequence":"first","affiliation":[]},{"given":"Samuel","family":"Gratzl","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Gillhofer","sequence":"additional","affiliation":[]},{"given":"Andreas","family":"Mayr","sequence":"additional","affiliation":[]},{"given":"Andreas","family":"Mitterecker","sequence":"additional","affiliation":[]},{"given":"Sepp","family":"Hochreiter","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,5,16]]},"reference":[{"issue":"11","key":"6393_CR1","doi-asserted-by":"publisher","first-page":"1370","DOI":"10.1109\/TKDE.2004.68","volume":"16","author":"D Jiang","year":"2004","unstructured":"Jiang D, Tang C, Zhang A: Cluster analysis for gene expression data: a survey. IEEE Transactions on Knowledge and Data Engineering. 2004, 16 (11): 1370-1386. 10.1109\/TKDE.2004.68.","journal-title":"IEEE Transactions on Knowledge and Data Engineering"},{"issue":"6","key":"6393_CR2","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1109\/MIS.2005.112","volume":"20","author":"L Zhao","year":"2005","unstructured":"Zhao L, Zaki MJ: MicroCluster: efficient deterministic biclustering of microarray data. IEEE Intelligent Systems. 2005, 20 (6): 40-49. 10.1109\/MIS.2005.112.","journal-title":"IEEE Intelligent Systems"},{"issue":"5814","key":"6393_CR3","doi-asserted-by":"publisher","first-page":"972","DOI":"10.1126\/science.1136800","volume":"315","author":"BJJ Frey","year":"2007","unstructured":"Frey BJJ, Dueck D: Clustering by passing messages between data points. Science. 2007, 315 (5814): 972-976. 10.1126\/science.1136800.","journal-title":"Science"},{"key":"6393_CR4","unstructured":"Cheng Y, Church GM: Biclustering of expression data. Proceedings of the Conference on Intelligent Systems for Molecular Biology (ISMB '00). AAAI Press, Palo Alto, CA, USA (2000) 2, 93-103."},{"issue":"1","key":"6393_CR5","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1109\/TCBB.2004.2","volume":"1","author":"SC Madeira","year":"2004","unstructured":"Madeira SC, Oliveira AL: Biclustering algorithms for biological data analysis: A survey. IEEE\/ACM Trans Comput Biol Bioinformatics. 2004, 1 (1): 24-45. 10.1109\/TCBB.2004.2.","journal-title":"IEEE\/ACM Trans Comput Biol Bioinformatics"},{"issue":"1","key":"6393_CR6","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-9-1","volume":"9","author":"K-O Cheng","year":"2008","unstructured":"Cheng K-O, Law N-F, Siu W-C, Liew AW-C: Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization. BMC Bioinformatics. 2008, 9 (1): 1-28. 10.1186\/1471-2105-9-1.","journal-title":"BMC Bioinformatics"},{"issue":"3","key":"6393_CR7","doi-asserted-by":"publisher","first-page":"338","DOI":"10.1016\/S0019-9958(65)90241-X","volume":"8","author":"LA Zadeh","year":"1965","unstructured":"Zadeh LA: Fuzzy sets. Information and Control. 1965, 8 (3): 338-353. 10.1016\/S0019-9958(65)90241-X.","journal-title":"Information and Control"},{"key":"6393_CR8","doi-asserted-by":"crossref","unstructured":"Bezdek JC: Pattern Recognition with Fuzzy Objective Function Algorithms. Kluwer Academic Publishers. Norwell, MA, USA (1981) 2, 10.1007\/978-1-4757-0450-1_1.","DOI":"10.1007\/978-1-4757-0450-1_1"},{"issue":"12","key":"6393_CR9","doi-asserted-by":"publisher","first-page":"1520","DOI":"10.1093\/bioinformatics\/btq227","volume":"26","author":"S Hochreiter","year":"2010","unstructured":"Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, Kasim A, Khamiakova T, Van Sanden S, Lin D, Talloen W, Bijnens L, G\u00f6hlmann HWH, Shkedy Z, Clevert DA: FABIA: factor analysis for bicluster acquisition. Bioinformatics. 2010, 26 (12): 1520-1527. 10.1093\/bioinformatics\/btq227.","journal-title":"Bioinformatics"},{"key":"6393_CR10","unstructured":"Thomas JJ, Cook KA: Illuminating the Path: The Research and Development Agenda for Visual Analytics. IEEE Computer Society Press, Los Alamitos. CA, USA (2005) 5, [ http:\/\/vis.pnnl.gov\/pdf\/RD_Agenda_VisualAnalytics.pdf ]"},{"key":"6393_CR11","volume-title":"Eurographics","author":"DA Keim","year":"2010","unstructured":"Keim DA, Kohlhammer J, Ellis G, Mansmann F: Mastering The Information Age Solving Problems with Visual Analytics. Eurographics. 2010, Goslar, Germany, [ http:\/\/www.vismaster.eu\/wp-content\/uploads\/2010\/11\/VisMaster-book-lowres.pdf ]"},{"key":"6393_CR12","doi-asserted-by":"crossref","DOI":"10.1201\/b10683","volume-title":"Interactive Data Visualization: Foundations, Techniques, and Application","author":"M Ward","year":"2010","unstructured":"Ward M, Grinstein G, Keim DA: Interactive Data Visualization: Foundations, Techniques, and Application. 2010, A.K. Peters, Natick, MA, USA, [ http:\/\/www.idvbook.com\/ ]"},{"key":"6393_CR13","first-page":"319","volume-title":"Heidelberg, Berlin, New York: Springer","author":"A Holzinger","year":"2013","unstructured":"Holzinger A: Human\u2013Computer Interaction & Knowledge Discovery (HCI-KDD): What is the benefit of bringing those two fields to work together? In: Multidisciplinary Research and Practice for Information Systems, Springer Lecture Notes in Computer Science LNCS 8127. Heidelberg, Berlin, New York: Springer. 2013, 319-328. 10.1007\/978-3-642-40511-2_22."},{"issue":"1","key":"6393_CR14","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1186\/1471-2105-11-121","volume":"11","author":"F Battke","year":"2010","unstructured":"Battke F, Symons S, Nieselt K: Mayday - integrative analytics for expression data. BMC Bioinformatics. 2010, 11 (1): 121-10.1186\/1471-2105-11-121.","journal-title":"BMC Bioinformatics"},{"issue":"20","key":"6393_CR15","doi-asserted-by":"publisher","first-page":"2760","DOI":"10.1093\/bioinformatics\/btp432","volume":"25","author":"M Streit","year":"2009","unstructured":"Streit M, Lex A, Kalkusch M, Zatloukal K, Schmalstieg D: Caleydo: Connecting pathways and gene expression. Bioinformatics. 2009, 25 (20): 2760-2761. 10.1093\/bioinformatics\/btp432.","journal-title":"Bioinformatics"},{"key":"6393_CR16","first-page":"57","volume-title":"Proceeding of the IEEE Symposium on Pacific Visualization (PacificVis '10)","author":"A Lex","year":"2010","unstructured":"Lex A, Streit M, Kruijff E, Schmalstieg D: Caleydo: Design and evaluation of a visual analysis framework for gene expression data in its biological context. Proceeding of the IEEE Symposium on Pacific Visualization (PacificVis '10). 2010, 57-64. 10.1109\/PACIFICVIS.2010.5429609."},{"key":"6393_CR17","first-page":"26","volume-title":"Proceedings of the Conference on Knowledge Management and Knowledge Technologies (i-KNOW '12)","author":"C Turkay","year":"2012","unstructured":"Turkay C, Parulek J, Hauser H: Dual analysis of DNA microarrays. Proceedings of the Conference on Knowledge Management and Knowledge Technologies (i-KNOW '12). 2012, 26-1268. 10.1145\/2362456.2362489."},{"issue":"25","key":"6393_CR18","doi-asserted-by":"publisher","first-page":"14863","DOI":"10.1073\/pnas.95.25.14863","volume":"95","author":"MB Eisen","year":"1998","unstructured":"Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proceedings of the National Academy of Sciences USA. 1998, 95 (25): 14863-14868. 10.1073\/pnas.95.25.14863.","journal-title":"Proceedings of the National Academy of Sciences USA"},{"issue":"7","key":"6393_CR19","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1109\/MC.2002.1016905","volume":"35","author":"J Seo","year":"2002","unstructured":"Seo J, Shneiderman B: Interactively exploring hierarchical clustering results. Computer. 2002, 35 (7): 80-86. 10.1109\/MC.2002.1016905.","journal-title":"Computer"},{"issue":"3","key":"6393_CR20","doi-asserted-by":"publisher","first-page":"823","DOI":"10.1111\/j.1467-8659.2009.01468.x","volume":"28","author":"TV Long","year":"2009","unstructured":"Long TV, Linsen L: MultiClusterTree: interactive visual exploration of hierarchical clusters in multidimensional multivariate data. Computer Graphics Forum (EuroVis '09). 2009, 28 (3): 823-830. 10.1111\/j.1467-8659.2009.01468.x.","journal-title":"Computer Graphics Forum (EuroVis '09)"},{"issue":"10","key":"6393_CR21","doi-asserted-by":"publisher","first-page":"1282","DOI":"10.1093\/bioinformatics\/btl099","volume":"22","author":"S Barkow","year":"2006","unstructured":"Barkow S, Bleuler S, Prelic A, Zimmermann P, Zitzler E: BicAT: a biclustering analysis toolbox. Bioinformatics (Oxford England). 2006, 22 (10): 1282-1283. 10.1093\/bioinformatics\/btl099.","journal-title":"Bioinformatics (Oxford England)"},{"issue":"17","key":"6393_CR22","doi-asserted-by":"publisher","first-page":"2342","DOI":"10.1093\/bioinformatics\/btm338","volume":"23","author":"KO Cheng","year":"2007","unstructured":"Cheng KO, Law NF, Siu WC, Lau TH: BiVisu: software tool for bicluster detection and visualization. Bioinformatics. 2007, 23 (17): 2342-2344. 10.1093\/bioinformatics\/btm338.","journal-title":"Bioinformatics"},{"key":"6393_CR23","first-page":"313","volume-title":"Proceedings of the Conf on Data Mining (ICDM '08)","author":"R Jin","year":"2008","unstructured":"Jin R, Xiang Y, Fuhry D, Dragan F: Overlapping matrix pattern visualization: A hypergraph approach. Proceedings of the Conf on Data Mining (ICDM '08). 2008, 313-322. 10.1109\/ICDM.2008.102."},{"issue":"1","key":"6393_CR24","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1186\/1748-7188-1-15","volume":"1","author":"GA Grothaus","year":"2006","unstructured":"Grothaus GA, Mufti A, Murali TM: Automatic layout and visualization of biclusters. Algorithms for Molecular Biology. 2006, 1 (1): 15-10.1186\/1748-7188-1-15.","journal-title":"Algorithms for Molecular Biology"},{"key":"6393_CR25","doi-asserted-by":"publisher","first-page":"641","DOI":"10.1007\/978-3-642-24028-7_59","volume":"5","author":"J Heinrich","year":"2011","unstructured":"Heinrich J, Seifert R, Burch M, Weiskopf D: BiCluster viewer: a visualization tool for analyzing gene expression data. Proceedings of the Conference on Advances in Visual Computing (ISVC '11). 2011, 5: 641-652. 10.1007\/978-3-642-24028-7_59.","journal-title":"Proceedings of the Conference on Advances in Visual Computing (ISVC '11)"},{"issue":"1","key":"6393_CR26","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1186\/1471-2105-9-247","volume":"9","author":"R Santamar\u00eda","year":"2008","unstructured":"Santamar\u00eda R, Ther\u00f3n R, Quintales L: A visual analytics approach for understanding biclustering results from microarray data. BMC Bioinformatics. 2008, 9 (1): 247-10.1186\/1471-2105-9-247.","journal-title":"BMC Bioinformatics"},{"issue":"3","key":"6393_CR27","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1109\/TFUZZ.2003.812696","volume":"11","author":"M Berthold","year":"2003","unstructured":"Berthold M, Hall L: Visualizing fuzzy points in parallel coordinates. IEEE Transactions on Fuzzy Systems. 2003, 11 (3): 369-374. 10.1109\/TFUZZ.2003.812696.","journal-title":"IEEE Transactions on Fuzzy Systems"},{"issue":"9-10","key":"6393_CR28","doi-asserted-by":"publisher","first-page":"1563","DOI":"10.1016\/S0167-8655(02)00395-1","volume":"24","author":"RJ Hathaway","year":"2003","unstructured":"Hathaway RJ, Bezdek JC: Visual cluster validity for prototype generator clustering models. Pattern Recognition Letters. 2003, 24 (9-10): 1563-1569. 10.1016\/S0167-8655(02)00395-1.","journal-title":"Pattern Recognition Letters"},{"key":"6393_CR29","first-page":"307","volume-title":"Conference on Information Visualisation (IV '09)","author":"G Grinstein","year":"2009","unstructured":"Grinstein G: Visualizing fuzzy clusters using RadViz. Conference on Information Visualisation (IV '09). 2009, 307-316. 10.1109\/IV.2009.74."},{"issue":"8","key":"6393_CR30","doi-asserted-by":"publisher","first-page":"1415","DOI":"10.1016\/j.patcog.2006.02.006","volume":"39","author":"L Rueda","year":"2006","unstructured":"Rueda L, Zhang Y: Geometric visualization of clusters obtained from fuzzy clustering algorithms. Pattern Recognition. 2006, 39 (8): 1415-1429. 10.1016\/j.patcog.2006.02.006.","journal-title":"Pattern Recognition"},{"issue":"1","key":"6393_CR31","doi-asserted-by":"publisher","first-page":"436","DOI":"10.1186\/1471-2105-12-436","volume":"12","author":"JH Morris","year":"2011","unstructured":"Morris JH, Apeltsin L, Newman AM, Baumbach J, Wittkop T, Su G, Bader GD, Ferrin TE: clusterMaker: a multi-algorithm clustering plugin for cytoscape. BMC Bioinformatics. 2011, 12 (1): 436-10.1186\/1471-2105-12-436.","journal-title":"BMC Bioinformatics"},{"key":"6393_CR32","first-page":"7","volume-title":"Handbook of Graph Drawing and Visualization","author":"SG Kobourov","year":"2012","unstructured":"Kobourov SG: Force-directed drawing algorithms. Handbook of Graph Drawing and Visualization. Edited by: Tamassia R. 2012, CRC Press, Boca Raton, FL, USA, 7-[ http:\/\/cs.brown.edu\/~rt\/gdhandbook\/chapters\/force-directed.pdf ]"},{"issue":"6","key":"6393_CR33","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1109\/TVCG.2010.138","volume":"16","author":"A Lex","year":"2010","unstructured":"Lex A, Streit M, Partl C, Kashofer K, Schmalstieg D: Comparative analysis of multidimensional, quantitative data. IEEE Transactions on Visualization and Computer Graphics (InfoVis '10). 2010, 16 (6): 1027-1035. 10.1109\/TVCG.2010.138.","journal-title":"IEEE Transactions on Visualization and Computer Graphics (InfoVis '10)"},{"issue":"3","key":"6393_CR34","doi-asserted-by":"publisher","first-page":"1175","DOI":"10.1111\/j.1467-8659.2012.03110.x","volume":"31","author":"A Lex","year":"2012","unstructured":"Lex A, Streit M, Schulz H.-J, Partl C, Schmalstieg D, Park PJ, Gehlenborg N: StratomeX: visual analysis of large-scale heterogeneous genomics data for cancer subtype characterization. Computer Graphics Forum (EuroVis '12). 2012, 31 (3): 1175-1184. 10.1111\/j.1467-8659.2012.03110.x.","journal-title":"Computer Graphics Forum (EuroVis '12)"},{"key":"6393_CR35","first-page":"91","volume-title":"Proceedings of the IEEE Symposium on Visual Analytics Science and Technology (VAST '09)","author":"C Collins","year":"2009","unstructured":"Collins C, Viegas F, Wattenberg M: Parallel tag clouds to explore and analyze faceted text corpora. Proceedings of the IEEE Symposium on Visual Analytics Science and Technology (VAST '09). 2009, 91-98. 10.1109\/VAST.2009.5333443."},{"issue":"12","key":"6393_CR36","doi-asserted-by":"publisher","first-page":"2536","DOI":"10.1109\/TVCG.2013.154","volume":"19","author":"A Lex","year":"2013","unstructured":"Lex A, Partl C, Kalkofen D, Streit M, Gratzl S, Wasserman AM, Schmalstieg D, Pfister H: Entourage: Visualizing relationships between biological pathways using contextual subsets. IEEE Transactions on Visualization and Computer Graphics (InfoVis '13). 2013 7, 19 (12): 2536-2545. 10.1109\/TVCG.2013.154.","journal-title":"IEEE Transactions on Visualization and Computer Graphics (InfoVis '13)"},{"issue":"1","key":"6393_CR37","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. the gene ontology consortium. Nature Genetics. 2000, 25 (1): 25-29. 10.1038\/75556.","journal-title":"Nature Genetics"},{"issue":"1","key":"6393_CR38","doi-asserted-by":"publisher","first-page":"144","DOI":"10.1186\/1471-2105-6-144","volume":"6","author":"S-Y Kim","year":"2005","unstructured":"Kim S-Y, Volsky DJ: PAGE: parametric analysis of gene set enrichment. BMC Bioinformatics. 2005, 6 (1): 144-10.1186\/1471-2105-6-144.","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"6393_CR39","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1093\/nar\/gkr988","volume":"40","author":"M Kanehisa","year":"2012","unstructured":"Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M: KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research. 2012, 40 (1): 109-114.","journal-title":"Nucleic Acids Research"},{"key":"6393_CR40","unstructured":"R Development Core Team: R: A Language and Environment for Statistical Computing. 2010, 10-[ http:\/\/www.R-project.org ]"},{"issue":"7","key":"6393_CR41","doi-asserted-by":"publisher","first-page":"4465","DOI":"10.1073\/pnas.012025199","volume":"99","author":"AI Su","year":"2002","unstructured":"Su AI, Cooke MP, Ching KA, Hakak Y, Walker JR, Wiltshire T, Orth AP, Vega RG, Sapinoso LM, Moqrich A, Patapoutian A, Hampton GM, Schultz PG, Hogenesch JB: Large-scale analysis of the human and mouse transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 2002, 99 (7): 4465-4470. 10.1073\/pnas.012025199.","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"6393_CR42","doi-asserted-by":"crossref","unstructured":"Hoshida Y, Brunet J-P, Tamayo P, Golub TR, Mesirov JP: Subclass mapping: Identifying common subtypes in independent disease data sets. PLoS ONE. 2007, 2 (11):","DOI":"10.1371\/journal.pone.0001195"},{"issue":"1","key":"6393_CR43","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1038\/nprot.2008.211","volume":"4","author":"DW Huang","year":"2009","unstructured":"Huang DW, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature protocols. 2009, 4 (1): 44-57.","journal-title":"Nature protocols"},{"issue":"2","key":"6393_CR44","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1145\/1345448.1345451","volume":"9","author":"I Assent","year":"2007","unstructured":"Assent I, Krieger R, M\u00fcller E, Seidl T: VISA: visual subspace clustering analysis. SIGKDD Explor Newsl. 2007, 9 (2): 5-12. 10.1145\/1345448.1345451.","journal-title":"SIGKDD Explor Newsl"},{"key":"6393_CR45","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1109\/VAST.2010.5652450","volume-title":"IEEE Symposium on Visual Analytics Science and Technology (VAST '10)","author":"B Ferdosi","year":"2010","unstructured":"Ferdosi B, Buddelmeijer H, Trager S, Wilkinson MHF, Roerdink JBTM: Finding and visualizing relevant subspaces for clustering high-dimensional astronomical data using connected morphological operators. IEEE Symposium on Visual Analytics Science and Technology (VAST '10). 2010, 35-42. 10.1109\/VAST.2010.5652450."},{"key":"6393_CR46","volume-title":"Furby Paper Website","author":"M Streit","year":"2014","unstructured":"Streit M: Furby Paper Website. 2014, Accessed 2014-10-03 16, [ http:\/\/furby.caleydo.org ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-15-S6-S4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,10]],"date-time":"2019-08-10T14:34:38Z","timestamp":1565447678000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-15-S6-S4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,5]]},"references-count":46,"journal-issue":{"issue":"S6","published-print":{"date-parts":[[2014,5]]}},"alternative-id":["6393"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-15-s6-s4","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,5]]},"assertion":[{"value":"16 May 2014","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"S4"}}