{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,14]],"date-time":"2025-10-14T07:02:49Z","timestamp":1760425369185},"reference-count":21,"publisher":"Springer Science and Business Media LLC","issue":"S19","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/1471-2105-16-s19-s5","type":"journal-article","created":{"date-parts":[[2015,12,17]],"date-time":"2015-12-17T00:01:57Z","timestamp":1450310517000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":10,"title":["The impact of sequence length and number of sequences on promoter prediction performance"],"prefix":"10.1186","volume":"16","author":[{"given":"S\u00e1vio G","family":"Carvalho","sequence":"first","affiliation":[]},{"given":"Renata","family":"Guerra-S\u00e1","sequence":"additional","affiliation":[]},{"given":"Luiz H","family":"de C Merschmann","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2015,12,16]]},"reference":[{"issue":"1","key":"7212_CR1","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/1471-2105-13-4","volume":"13","author":"Y Gan","year":"2012","unstructured":"Gan Y, Guan J, Zhou S: A comparison study on feature selection of dna structural properties for promoter prediction. BMC Bioinformatics. 2012, 13 (1): 4-","journal-title":"BMC Bioinformatics"},{"issue":"13","key":"7212_CR2","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1093\/bioinformatics\/btn172","volume":"24","author":"T Abeel","year":"2008","unstructured":"Abeel T, Saeys Y, Rouz\u00e9 P, Van de Peer Y: Prosom: core promoter prediction based on unsupervised clustering of dna physical profiles. Bioinformatics. 2008, 24 (13): 24-31.","journal-title":"Bioinformatics"},{"issue":"16","key":"7212_CR3","doi-asserted-by":"publisher","first-page":"2006","DOI":"10.1093\/bioinformatics\/btp359","volume":"25","author":"Y Gan","year":"2009","unstructured":"Gan Y, Guan J, Zhou S: A pattern-based nearest neighbor search approach for promoter prediction using dna structural profiles. Bioinformatics. 2009, 25 (16): 2006-2012.","journal-title":"Bioinformatics"},{"issue":"5","key":"7212_CR4","doi-asserted-by":"publisher","first-page":"498","DOI":"10.1093\/bib\/bbp027","volume":"10","author":"J Zeng","year":"2009","unstructured":"Zeng J, Zhu S, Yan H: Towards accurate human promoter recognition: a review of currently used sequence features and classification methods. Briefings in Bioinformatics. 2009, 10 (5): 498-508.","journal-title":"Briefings in Bioinformatics"},{"issue":"2","key":"7212_CR5","doi-asserted-by":"publisher","first-page":"310","DOI":"10.1101\/gr.6991408","volume":"18","author":"T Abeel","year":"2008","unstructured":"Abeel T, Saeys Y, Bonnet E, Rouz\u00e9 P, Van de Peer Y: Generic eukaryotic core promoter prediction using structural features of dna. Genome Research. 2008, 18 (2): 310-323.","journal-title":"Genome Research"},{"issue":"1","key":"7212_CR6","doi-asserted-by":"publisher","first-page":"677","DOI":"10.1186\/1471-2164-11-677","volume":"11","author":"D Dineen","year":"2010","unstructured":"Dineen D, Schroder M, Higgins D, Cunningham P: Ensemble approach combining multiple methods improves human transcription start site prediction. BMC Genomics. 2010, 11 (1): 677-","journal-title":"BMC Genomics"},{"issue":"suppl 1","key":"7212_CR7","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1093\/bioinformatics\/17.suppl_1.S199","volume":"17","author":"U Ohler","year":"2001","unstructured":"Ohler U, Niemann H, Liao G-c, Rubin GM: Joint modeling of dna sequence and physical properties to improve eukaryotic promoter recognition. Bioinformatics. 2001, 17 (suppl 1): 199-206.","journal-title":"Bioinformatics"},{"issue":"5","key":"7212_CR8","doi-asserted-by":"publisher","first-page":"707","DOI":"10.1101\/gr.113381.110","volume":"21","author":"V Grishkevich","year":"2011","unstructured":"Grishkevich V, Hashimshony T, Yanai I: Core promoter t-blocks correlate with gene expression levels in c. elegans. Genome Research. 2011, 21 (5): 707-717.","journal-title":"Genome Research"},{"key":"7212_CR9","doi-asserted-by":"publisher","first-page":"155","DOI":"10.4137\/BBI.S9426","volume":"6","author":"P Meysman","year":"2012","unstructured":"Meysman P, Marchal K, Engelen K: Dna structural properties in the classification of genomic transcription regulation elements. Bioinformatics and Biology Insights. 2012, 6: 155-168.","journal-title":"Bioinformatics and Biology Insights"},{"issue":"13","key":"7212_CR10","doi-asserted-by":"publisher","first-page":"4255","DOI":"10.1093\/nar\/gki737","volume":"33","author":"K Florquin","year":"2005","unstructured":"Florquin K, Saeys Y, Degroeve S, Rouz\u00e9 P, Van de Peer Y: Large-scale structural analysis of the core promoter in mammalian and plant genomes. Nucleic Acids Research. 2005, 33 (13): 4255-4264.","journal-title":"Nucleic Acids Research"},{"key":"7212_CR11","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1007\/978-3-319-12418-6_6","volume-title":"Advances in Bioinformatics and Computational Biology. Lecture Notes in Computer Science","author":"S Carvalho","year":"2014","unstructured":"Carvalho S, Guerra-S\u00e1 R, de C Merschmann L: Influence of sequence length in promoter prediction performance. Advances in Bioinformatics and Computational Biology. Lecture Notes in Computer Science. Edited by: Campos, S. 2014, Springer, Switzerland, 8826: 41-48."},{"issue":"D1","key":"7212_CR12","doi-asserted-by":"publisher","first-page":"150","DOI":"10.1093\/nar\/gkr1005","volume":"40","author":"R Yamashita","year":"2012","unstructured":"Yamashita R, Sugano S, Suzuki Y, Nakai K: Dbtss: Database of transcriptional start sites progress report in 2012. Nucleic Acids Research. 2012, 40 (D1): 150-154.","journal-title":"Nucleic Acids Research"},{"issue":"12","key":"7212_CR13","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1093\/bioinformatics\/btp191","volume":"25","author":"T Abeel","year":"2009","unstructured":"Abeel T, Van de Peer Y, Saeys Y: Toward a gold standard for promoter prediction evaluation. Bioinformatics. 2009, 25 (12): 313-320. doi:10.1093\/bioinformatics\/btp191","journal-title":"Bioinformatics"},{"key":"7212_CR14","first-page":"35","volume-title":"Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montr\u00e9al, Qu\u00e9bec, Canada, June 28 July 1, 1998","author":"P Baldi","year":"1998","unstructured":"Baldi P, Brunak S, Chauvin Y, Pedersen AG: Computational applications of DNA structural scales. Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montr\u00e9al, Qu\u00e9bec, Canada, June 28 July 1, 1998. 1998, 35-42."},{"issue":"3","key":"7212_CR15","first-page":"273","volume":"20","author":"C Cortes","year":"1995","unstructured":"Cortes C, Vapnik V: Support-vector networks. Machine Learning. 1995, 20 (3): 273-297.","journal-title":"Machine Learning"},{"issue":"1","key":"7212_CR16","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1023\/A:1010933404324","volume":"45","author":"L Breiman","year":"2001","unstructured":"Breiman L: Random forests. Machine Learning. 2001, 45 (1): 5-32.","journal-title":"Machine Learning"},{"issue":"1","key":"7212_CR17","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1109\/TIT.1967.1053964","volume":"13","author":"TM Cover","year":"1967","unstructured":"Cover TM, Hart PE: Nearest neighbor pattern classification. IEEE Transactions on Information Theory. 1967, 13 (1): 21-27.","journal-title":"IEEE Transactions on Information Theory"},{"key":"7212_CR18","volume-title":"SpringerLink : Bu\u00fccher","author":"M Kuhn","year":"2013","unstructured":"Kuhn M, Johnson K: Applied Predictive Modeling. SpringerLink : Bu\u00fccher. 2013, Springer, New York, NY, USA"},{"key":"7212_CR19","volume-title":"The Morgan Kaufmann series in data management systems","author":"J Han","year":"2006","unstructured":"Han J, Kamber M: Data Mining: Concepts and Techniques. The Morgan Kaufmann series in data management systems. 2006, Elsevier, San Francisco, CA, USA"},{"key":"7212_CR20","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511921803","volume-title":"Evaluating Learning Algorithms: A Classification Perspective","author":"N Japkowicz","year":"2011","unstructured":"Japkowicz N, Shah M: Evaluating Learning Algorithms: A Classification Perspective. 2011, Cambridge University Press, New York, NY, USA"},{"issue":"1","key":"7212_CR21","doi-asserted-by":"publisher","first-page":"159","DOI":"10.2307\/2529310","volume":"33","author":"JR Landis","year":"1977","unstructured":"Landis JR, Koch GG: The measurement of observer agreement for categorical data. Biometrics. 1977, 33 (1): 159-174.","journal-title":"Biometrics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-16-S19-S5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,9,2]],"date-time":"2019-09-02T12:24:30Z","timestamp":1567427070000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-16-S19-S5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,12]]},"references-count":21,"journal-issue":{"issue":"S19","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["7212"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-16-s19-s5","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,12]]},"assertion":[{"value":"16 December 2015","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"S5"}}