{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,13]],"date-time":"2026-02-13T07:17:53Z","timestamp":1770967073651,"version":"3.50.1"},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"DOI":"10.1186\/1471-2105-3-35","type":"journal-article","created":{"date-parts":[[2002,12,7]],"date-time":"2002-12-07T12:08:32Z","timestamp":1039262912000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":313,"title":["FunSpec: a web-based cluster interpreter for yeast"],"prefix":"10.1186","volume":"3","author":[{"given":"Mark D","family":"Robinson","sequence":"first","affiliation":[]},{"given":"J\u00f6rg","family":"Grigull","sequence":"additional","affiliation":[]},{"given":"Naveed","family":"Mohammad","sequence":"additional","affiliation":[]},{"given":"Timothy R","family":"Hughes","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2002,11,13]]},"reference":[{"key":"45_CR1","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1093\/nar\/26.1.73","volume":"26","author":"JM Cherry","year":"1998","unstructured":"Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, Jia Y, Juvik G, Roe T, Schroeder M, et al.: SGD: Saccharomyces Genome Database.\n                           Nucleic Acids Res 1998, 26: 73\u201379. 10.1093\/nar\/26.1.73","journal-title":"Nucleic Acids Res"},{"key":"45_CR2","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1093\/nar\/28.1.37","volume":"28","author":"HW Mewes","year":"2000","unstructured":"Mewes HW, Frishman D, Gruber C, Geier B, Haase D, Kaps A, Lemcke K, Mannhaupt G, Pfeiffer F, Schuller C, et al.: MIPS: a database for genomes and protein sequences.\n                           Nucleic Acids Res 2000, 28: 37\u201340. 10.1093\/nar\/28.1.37","journal-title":"Nucleic Acids Res"},{"key":"45_CR3","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1093\/nar\/29.1.75","volume":"29","author":"MC Costanzo","year":"2001","unstructured":"Costanzo MC, Crawford ME, Hirschman JE, Kranz JE, Olsen P, Robertson LS, Skrzypek MS, Braun BR, Hopkins KL, Kondu P, et al.: YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information.\n                           Nucleic Acids Res 2001, 29: 75\u201379. 10.1093\/nar\/29.1.75","journal-title":"Nucleic Acids Res"},{"key":"45_CR4","doi-asserted-by":"publisher","first-page":"1463","DOI":"10.1101\/gr.207401","volume":"11","author":"D Greenbaum","year":"2001","unstructured":"Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M: Interrelating different types of genomic data, from proteome to secretome: 'oming in on function.\n                           Genome Res 2001, 11: 1463\u20131468. 10.1101\/gr.207401","journal-title":"Genome Res"},{"key":"45_CR5","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1038\/ng906","volume":"31","author":"LF Wu","year":"2002","unstructured":"Wu LF, Hughes TR, Davierwala AP, Robinson MD, Stoughton R, Altschuler SJ: Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters.\n                           Nat Genet 2002, 31: 255\u2013265. 10.1038\/ng906","journal-title":"Nat Genet"},{"key":"45_CR6","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1007\/s101420000036","volume":"1","author":"C Blaschke","year":"2001","unstructured":"Blaschke C, Oliveros JC, Valencia A: Mining functional information associated with expression arrays.\n                           Funct Integr Genomics 2001, 1: 256\u2013268. 10.1007\/s101420000036","journal-title":"Funct Integr Genomics"},{"key":"45_CR7","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1093\/bioinformatics\/18.2.323","volume":"18","author":"CM Bouton","year":"2002","unstructured":"Bouton CM, Pevsner J: DRAGON View: information visualization for annotated microarray data.\n                           Bioinformatics 2002, 18: 323\u2013324. 10.1093\/bioinformatics\/18.2.323","journal-title":"Bioinformatics"},{"key":"45_CR8","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1016\/S0092-8674(00)00015-5","volume":"102","author":"TR Hughes","year":"2000","unstructured":"Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD, et al.: Functional discovery via a compendium of expression profiles.\n                           Cell 2000, 102: 109\u2013126.","journal-title":"Cell"},{"key":"45_CR9","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1093\/nar\/28.1.81","volume":"28","author":"A Kumar","year":"2000","unstructured":"Kumar A, Cheung KH, Ross-Macdonald P, Coelho PS, Miller P, Snyder M: TRIPLES: a database of gene function in Saccharomyces cerevisiae.\n                           Nucleic Acids Res 2000, 28: 81\u201384. 10.1093\/nar\/28.1.81","journal-title":"Nucleic Acids Res"},{"key":"45_CR10","doi-asserted-by":"publisher","first-page":"1425","DOI":"10.1101\/gr.180801","volume":"11","author":"The Gene Ontology Consortium","year":"2001","unstructured":"The Gene Ontology Consortium: Creating the gene ontology resource: design and implementation.\n                           Genome Res 2001, 11: 1425\u20131433. 10.1101\/gr.180801","journal-title":"Genome Res"},{"key":"45_CR11","doi-asserted-by":"publisher","first-page":"5857","DOI":"10.1073\/pnas.95.11.5857","volume":"95","author":"J Schultz","year":"1998","unstructured":"Schultz J, Milpetz F, Bork P, Ponting CP: SMART, a simple modular architecture research tool: identification of signaling domains.\n                           Proc Natl Acad Sci U S A 1998, 95: 5857\u20135864. 10.1073\/pnas.95.11.5857","journal-title":"Proc Natl Acad Sci U S A"},{"key":"45_CR12","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1093\/nar\/30.1.276","volume":"30","author":"A Bateman","year":"2002","unstructured":"Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL: The Pfam protein families database.\n                           Nucleic Acids Res 2002, 30: 276\u2013280. 10.1093\/nar\/30.1.276","journal-title":"Nucleic Acids Res"},{"key":"45_CR13","doi-asserted-by":"publisher","first-page":"2364","DOI":"10.1126\/science.1065810","volume":"294","author":"AH Tong","year":"2001","unstructured":"Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Page N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, et al.: Systematic genetic analysis with ordered arrays of yeast deletion mutants.\n                           Science 2001, 294: 2364\u20132368. 10.1126\/science.1065810","journal-title":"Science"},{"key":"45_CR14","doi-asserted-by":"publisher","first-page":"623","DOI":"10.1038\/35001009","volume":"403","author":"P Uetz","year":"2000","unstructured":"Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, et al.: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.\n                           Nature 2000, 403: 623\u2013627. 10.1038\/35001009","journal-title":"Nature"},{"key":"45_CR15","doi-asserted-by":"publisher","first-page":"4569","DOI":"10.1073\/pnas.061034498","volume":"98","author":"T Ito","year":"2001","unstructured":"Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the yeast protein interactome.\n                           Proc Natl Acad Sci U S A 2001, 98: 4569\u20134574. 10.1073\/pnas.061034498","journal-title":"Proc Natl Acad Sci U S A"},{"key":"45_CR16","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1038\/415141a","volume":"415","author":"AC Gavin","year":"2002","unstructured":"Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, et al.: Functional organization of the yeast proteome by systematic analysis of protein complexes.\n                           Nature 2002, 415: 141\u2013147. 10.1038\/415141a","journal-title":"Nature"},{"key":"45_CR17","doi-asserted-by":"publisher","first-page":"180","DOI":"10.1038\/415180a","volume":"415","author":"Y Ho","year":"2002","unstructured":"Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, et al.: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.\n                           Nature 2002, 415: 180\u2013183. 10.1038\/415180a","journal-title":"Nature"},{"key":"45_CR18","doi-asserted-by":"publisher","first-page":"707","DOI":"10.1101\/gad.970902","volume":"16","author":"A Kumar","year":"2002","unstructured":"Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L, Drawid A, Jansen R, Liu Y, et al.: Subcellular localization of the yeast proteome.\n                           Genes Dev 2002, 16: 707\u2013719. 10.1101\/gad.970902","journal-title":"Genes Dev"},{"key":"45_CR19","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1038\/46558","volume":"402","author":"P Ross-Macdonald","year":"1999","unstructured":"Ross-Macdonald P, Coelho PS, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung KH, Sheehan A, Symoniatis D, Umansky L, et al.: Large-scale analysis of the yeast genome by transposon tagging and gene disruption.\n                           Nature 1999, 402: 413\u2013418. 10.1038\/46558","journal-title":"Nature"},{"key":"45_CR20","doi-asserted-by":"publisher","first-page":"387","DOI":"10.1038\/nature00935","volume":"418","author":"G Giaever","year":"2002","unstructured":"Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, et al.: Functional profiling of the Saccharomyces cerevisiae genome.\n                           Nature 2002, 418: 387\u2013391. 10.1038\/nature00935","journal-title":"Nature"},{"key":"45_CR21","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1038\/10343","volume":"22","author":"S Tavazoie","year":"1999","unstructured":"Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM: Systematic determination of genetic network architecture.\n                           Nat Genet 1999, 22: 281\u2013285. 10.1038\/10343","journal-title":"Nat Genet"},{"key":"45_CR22","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1007\/BF01908075","volume":"2","author":"L Hubert","year":"1985","unstructured":"Hubert L, Arabie P: Comparing Partitions.\n                           Journal of Classification 1985, 2: 193\u2013218.","journal-title":"Journal of Classification"},{"key":"45_CR23","doi-asserted-by":"publisher","first-page":"482","DOI":"10.1038\/ng776","volume":"29","author":"H Ge","year":"2001","unstructured":"Ge H, Liu Z, Church GM, Vidal M: Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.\n                           Nat Genet 2001, 29: 482\u2013486. 10.1038\/ng776","journal-title":"Nat Genet"},{"key":"45_CR24","doi-asserted-by":"publisher","first-page":"1133","DOI":"10.1016\/S1097-2765(02)00531-2","volume":"9","author":"P Kemmeren","year":"2002","unstructured":"Kemmeren P, van Berkum NL, Vilo J, Bijma T, Donders R, Brazma A, Holstege FC: Protein interaction verification and functional annotation by integrated analysis of genome-scale data.\n                           Mol Cell 2002, 9: 1133\u20131143.","journal-title":"Mol Cell"},{"key":"45_CR25","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing.\n                           Journal of the Royal Statistical Society, Series B 1995, 57: 289\u2013300.","journal-title":"Journal of the Royal Statistical Society, Series B"},{"key":"45_CR26","first-page":"48","volume":"27","author":"RJ Cho","year":"2001","unstructured":"Cho RJ, Huang M, Campbell MJ, Dong H, Steinmetz L, Sapinoso L, Hampton G, Elledge SJ, Davis RW, Lockhart DJ: Transcriptional regulation and function during the human cell cycle.\n                           Nat Genet 2001, 27: 48\u201354.","journal-title":"Nat Genet"},{"key":"45_CR27","doi-asserted-by":"publisher","first-page":"2087","DOI":"10.1126\/science.1061603","volume":"293","author":"SK Kim","year":"2001","unstructured":"Kim SK, Lund J, Kiraly M, Duke K, Jiang M, Stuart JM, Eizinger A, Wylie BN, Davidson GS: A gene expression map for Caenorhabditis elegans.\n                           Science 2001, 293: 2087\u20132092. 10.1126\/science.1061603","journal-title":"Science"},{"key":"45_CR28","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1038\/47048","volume":"402","author":"EM Marcotte","year":"1999","unstructured":"Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D: A combined algorithm for genome-wide prediction of protein function.\n                           Nature 1999, 402: 83\u201386. 10.1038\/47048","journal-title":"Nature"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-3-35.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T15:51:46Z","timestamp":1726242706000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-3-35"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2002,11,13]]},"references-count":28,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2002,12]]}},"alternative-id":["45"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-3-35","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2002,11,13]]},"assertion":[{"value":"8 September 2002","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 November 2002","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 November 2002","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"35"}}