{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T08:31:19Z","timestamp":1775982679387,"version":"3.50.1"},"reference-count":22,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"DOI":"10.1186\/1471-2105-4-1","type":"journal-article","created":{"date-parts":[[2003,1,17]],"date-time":"2003-01-17T12:07:57Z","timestamp":1042805277000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":92,"title":["SeqVISTA: a graphical tool for sequence feature visualization and comparison"],"prefix":"10.1186","volume":"4","author":[{"given":"Zhenjun","family":"Hu","sequence":"first","affiliation":[]},{"given":"Martin","family":"Frith","sequence":"additional","affiliation":[]},{"given":"Tianhua","family":"Niu","sequence":"additional","affiliation":[]},{"given":"Zhiping","family":"Weng","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2003,1,4]]},"reference":[{"key":"51_CR1","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1093\/nar\/30.1.38","volume":"30","author":"T Hubbard","year":"2002","unstructured":"Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M: The Ensembl genome database project.\n                           Nucleic Acids Res 2002, 30: 38. 10.1093\/nar\/30.1.38","journal-title":"Nucleic Acids Res"},{"key":"51_CR2","doi-asserted-by":"publisher","first-page":"996","DOI":"10.1101\/gr.229102. Article published online before print in May 2002","volume":"12","author":"Kent WJ","year":"2002","unstructured":"WJ Kent, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D: The human genome browser at UCSC.\n                           Genome Res 2002, 12: 996. 10.1101\/gr.229102. Article published online before print in May 2002","journal-title":"Genome Res"},{"key":"51_CR3","doi-asserted-by":"publisher","first-page":"1046","DOI":"10.1093\/bioinformatics\/16.11.1046","volume":"16","author":"C Mayor","year":"2000","unstructured":"Mayor C, Brudno M, Schwartz JR, Poliakov A, Rubin EM, Frazer KA, Pachter LS, Dubchak I: VISTA : visualizing global DNA sequence alignments of arbitrary length.\n                           Bioinformatics 2000, 16: 1046. 10.1093\/bioinformatics\/16.11.1046","journal-title":"Bioinformatics"},{"key":"51_CR4","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1101\/gr.211202","volume":"12","author":"C Kashuk","year":"2002","unstructured":"Kashuk C, SenGupta S, Eichler E, Chakravarti A: ViewGene: a graphical tool for polymorphism visualization and characterization.\n                           Genome Res 2002, 12: 333. 10.1101\/gr.211202","journal-title":"Genome Res"},{"key":"51_CR5","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1006\/jmbi.1997.0951","volume":"268","author":"C Burge","year":"1997","unstructured":"Burge C, Karlin S: Prediction of complete gene structures in human genomic DNA.\n                           J Mol Biol 1997, 268: 78. 10.1006\/jmbi.1997.0951","journal-title":"J Mol Biol"},{"key":"51_CR6","doi-asserted-by":"publisher","first-page":"1107","DOI":"10.1093\/nar\/26.4.1107","volume":"26","author":"AV Lukashin","year":"1998","unstructured":"Lukashin AV, Borodovsky M: GeneMark.hmm: new solutions for gene finding.\n                           Nucleic Acids Res 1998, 26: 1107. 10.1093\/nar\/26.4.1107","journal-title":"Nucleic Acids Res"},{"key":"51_CR7","doi-asserted-by":"publisher","first-page":"529","DOI":"10.1101\/gr.10.4.529","volume":"10","author":"MG Reese","year":"2000","unstructured":"Reese MG, Kulp D, Tammana H, Haussler D: Genie \u2013 gene finding in Drosophila melanogaster.\n                           Genome Res 2000, 10: 529. 10.1101\/gr.10.4.529","journal-title":"Genome Res"},{"key":"51_CR8","doi-asserted-by":"publisher","first-page":"4636","DOI":"10.1093\/nar\/27.23.4636","volume":"27","author":"AL Delcher","year":"1999","unstructured":"Delcher AL, Harmon D, Kasif S, White O, Salzberg SL: Improved microbial gene identification with GLIMMER.\n                           Nucleic Acids Res 1999, 27: 4636. 10.1093\/nar\/27.23.4636","journal-title":"Nucleic Acids Res"},{"key":"51_CR9","doi-asserted-by":"publisher","first-page":"599","DOI":"10.1006\/jmbi.2000.3589","volume":"297","author":"M Scherf","year":"2000","unstructured":"Scherf M, Klingenhoff A, Werner T: Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach.\n                           J Mol Biol 2000, 297: 599. 10.1006\/jmbi.2000.3589","journal-title":"J Mol Biol"},{"key":"51_CR10","doi-asserted-by":"publisher","first-page":"4878","DOI":"10.1093\/nar\/23.23.4878","volume":"23","author":"K Quandt","year":"1995","unstructured":"Quandt K, Frech K, Karas H, Wingender E, Werner T: MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.\n                           Nucleic Acids Res 1995, 23: 4878.","journal-title":"Nucleic Acids Res"},{"key":"51_CR11","doi-asserted-by":"publisher","first-page":"878","DOI":"10.1093\/bioinformatics\/17.10.878","volume":"17","author":"MC Frith","year":"2001","unstructured":"Frith MC, Hansen U, Weng Z: Detection of cis-element clusters in higher eukaryotic DNA.\n                           Bioinformatics 2001, 17: 878. 10.1093\/bioinformatics\/17.10.878","journal-title":"Bioinformatics"},{"key":"51_CR12","doi-asserted-by":"publisher","first-page":"3214","DOI":"10.1093\/nar\/gkf438","volume":"30","author":"MC Frith","year":"2002","unstructured":"Frith MC, Spouge JL, Hansen U, Weng Z: Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.\n                           Nucleic Acids Res 2002, 30: 3214. 10.1093\/nar\/gkf438","journal-title":"Nucleic Acids Res"},{"key":"51_CR13","unstructured":"Smit AFA, Green P: personal communication.\n                           RepeatMasker [http:\/\/ftp.genome.washington.edu\/RM\/RepeatMasker.html]"},{"key":"51_CR14","doi-asserted-by":"publisher","first-page":"573","DOI":"10.1093\/nar\/27.2.573","volume":"27","author":"G Benson","year":"1999","unstructured":"Benson G: Tandem repeats finder: a program to analyze DNA sequences.\n                           Nucleic Acids Res 1999, 27: 573. 10.1093\/nar\/27.2.573","journal-title":"Nucleic Acids Res"},{"key":"51_CR15","doi-asserted-by":"publisher","first-page":"584","DOI":"10.1006\/jmbi.1993.1413","volume":"232","author":"B Rost","year":"1993","unstructured":"Rost B, Sander C: Prediction of protein secondary structure at better than 70% accuracy.\n                           J Mol Biol 1993, 232: 584. 10.1006\/jmbi.1993.1413","journal-title":"J Mol Biol"},{"key":"51_CR16","doi-asserted-by":"publisher","first-page":"892","DOI":"10.1093\/bioinformatics\/14.10.892","volume":"14","author":"JA Cuff","year":"1998","unstructured":"Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ: JPred: a consensus secondary structure prediction server.\n                           Bioinformatics 1998, 14: 892. 10.1093\/bioinformatics\/14.10.892","journal-title":"Bioinformatics"},{"key":"51_CR17","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1006\/jmbi.1999.3091","volume":"292","author":"DT Jones","year":"1999","unstructured":"Jones DT: Protein secondary structure prediction based on position-specific scoring matrices.\n                           J Mol Biol 1999, 292: 195. 10.1006\/jmbi.1999.3091","journal-title":"J Mol Biol"},{"key":"51_CR18","doi-asserted-by":"publisher","first-page":"3038","DOI":"10.1021\/bi00176a037","volume":"33","author":"DT Jones","year":"1994","unstructured":"Jones DT, Taylor WR, Thornton JM: A model recognition approach to the prediction of all-helical membrane protein structure and topology.\n                           Biochemistry 1994, 33: 3038.","journal-title":"Biochemistry"},{"key":"51_CR19","doi-asserted-by":"publisher","first-page":"646","DOI":"10.1093\/bioinformatics\/17.7.646","volume":"17","author":"S Moller","year":"2001","unstructured":"Moller S, Croning MD, Apweiler R: Evaluation of methods for the prediction of membrane spanning regions.\n                           Bioinformatics 2001, 17: 646. 10.1093\/bioinformatics\/17.7.646","journal-title":"Bioinformatics"},{"key":"51_CR20","volume-title":"Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure","author":"YJK Edwards","year":"1998","unstructured":"Edwards YJK, Frith M, Elgar G, Bishop MJ: Theatre: a novel tool for the comparative investigation and display of evolutionary diversity of functional and structural features in DNA sequences.\n                           Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure 1998."},{"key":"51_CR21","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1093\/nar\/30.1.17","volume":"30","author":"DA Benson","year":"2002","unstructured":"Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL: GenBank.\n                           Nucleic Acids Res 2002, 30: 17. 10.1093\/nar\/30.1.17","journal-title":"Nucleic Acids Res"},{"key":"51_CR22","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1093\/nar\/28.1.45","volume":"28","author":"A Bairoch","year":"2000","unstructured":"Bairoch A, Apweiler R: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.\n                           Nucleic Acids Res 2000, 28: 45. 10.1093\/nar\/28.1.45","journal-title":"Nucleic Acids Res"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-4-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T15:52:28Z","timestamp":1726242748000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-4-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,1,4]]},"references-count":22,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2003,12]]}},"alternative-id":["51"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-4-1","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2003,1,4]]},"assertion":[{"value":"15 September 2002","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 January 2003","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 January 2003","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"1"}}