{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,19]],"date-time":"2026-05-19T15:37:26Z","timestamp":1779205046475,"version":"3.51.4"},"reference-count":32,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"DOI":"10.1186\/1471-2105-4-11","type":"journal-article","created":{"date-parts":[[2003,5,1]],"date-time":"2003-05-01T12:27:54Z","timestamp":1051792074000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":186,"title":["PreBIND and Textomy \u2013 mining the biomedical literature for protein-protein interactions using a support vector machine"],"prefix":"10.1186","volume":"4","author":[{"given":"Ian","family":"Donaldson","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Joel","family":"Martin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Berry","family":"de Bruijn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cheryl","family":"Wolting","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vicki","family":"Lay","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brigitte","family":"Tuekam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shudong","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Berivan","family":"Baskin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gary D","family":"Bader","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Katerina","family":"Michalickova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tony","family":"Pawson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christopher WV","family":"Hogue","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2003,3,27]]},"reference":[{"key":"61_CR1","doi-asserted-by":"publisher","first-page":"465","DOI":"10.1093\/bioinformatics\/16.5.465","volume":"16","author":"GD Bader","year":"2000","unstructured":"Bader GD, Hogue CW: BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.\n                           Bioinformatics 2000, 16: 465\u2013477. 10.1093\/bioinformatics\/16.5.465","journal-title":"Bioinformatics"},{"key":"61_CR2","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1093\/nar\/29.1.242","volume":"29","author":"GD Bader","year":"2001","unstructured":"Bader GD, Donaldson I, Wolting C, Ouellette BF, Pawson T, Hogue CW: BIND--The Biomolecular Interaction Network Database.\n                           Nucleic Acids Res 2001, 29: 242\u2013245. 10.1093\/nar\/29.1.242","journal-title":"Nucleic Acids Res"},{"key":"61_CR3","first-page":"62","volume":"9","author":"T Sekimizu","year":"1998","unstructured":"Sekimizu T, Park HS, Tsujii J: Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts.\n                           Genome Inform Ser Workshop Genome Inform 1998, 9: 62\u201371.","journal-title":"Genome Inform Ser Workshop Genome Inform"},{"key":"61_CR4","first-page":"517","volume-title":"Pac Symp Biocomput","author":"TC Rindflesch","year":"2000","unstructured":"Rindflesch TC, Tanabe L, Weinstein JN, Hunter L: EDGAR: extraction of drugs, genes and relations from the biomedical literature.\n                           Pac Symp Biocomput 2000, 517\u2013528."},{"key":"61_CR5","first-page":"505","volume-title":"Pac Symp Biocomput","author":"K Humphreys","year":"2000","unstructured":"Humphreys K, Demetriou G, Gaizauskas R: Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures.\n                           Pac Symp Biocomput 2000, 505\u2013516."},{"key":"61_CR6","first-page":"279","volume":"8","author":"D Proux","year":"2000","unstructured":"Proux D, Rechenmann F, Julliard L: A pragmatic information extraction strategy for gathering data on genetic interactions.\n                           Proc Int Conf Intell Syst Mol Biol 2000, 8: 279\u2013285.","journal-title":"Proc Int Conf Intell Syst Mol Biol"},{"key":"61_CR7","first-page":"529","volume-title":"Pac Symp Biocomput","author":"BJ Stapley","year":"2000","unstructured":"Stapley BJ, Benoit G: Biobibliometrics: information retrieval and visualization from co- occurrences of gene names in Medline abstracts.\n                           Pac Symp Biocomput 2000, 529\u2013540."},{"key":"61_CR8","first-page":"541","volume-title":"Pac Symp Biocomput","author":"J Thomas","year":"2000","unstructured":"Thomas J, Milward D, Ouzounis C, Pulman S, Carroll M: Automatic extraction of protein interactions from scientific abstracts.\n                           Pac Symp Biocomput 2000, 541\u2013552."},{"key":"61_CR9","first-page":"123","volume":"12","author":"C Blaschke","year":"2001","unstructured":"Blaschke C, Valencia A: The potential use of SUISEKI as a protein interaction discovery tool.\n                           Genome Inform Ser Workshop Genome Inform 2001, 12: 123\u2013134.","journal-title":"Genome Inform Ser Workshop Genome Inform"},{"key":"61_CR10","doi-asserted-by":"publisher","first-page":"S74","DOI":"10.1093\/bioinformatics\/17.suppl_1.S74","volume":"17","author":"C Friedman","year":"2001","unstructured":"Friedman C, Kra P, Yu H, Krauthammer M, Rzhetsky A: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.\n                           Bioinformatics 2001, 17: S74-NaN.","journal-title":"Bioinformatics"},{"key":"61_CR11","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1038\/88213","volume":"28","author":"TK Jenssen","year":"2001","unstructured":"Jenssen TK, Laegreid A, Komorowski J, Hovig E: A literature network of human genes for high-throughput analysis of gene expression.\n                           Nat Genet 2001, 28: 21\u201328. 10.1038\/88213","journal-title":"Nat Genet"},{"key":"61_CR12","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1093\/bioinformatics\/17.2.155","volume":"17","author":"T Ono","year":"2001","unstructured":"Ono T, Hishigaki H, Tanigami A, Takagi T: Automated extraction of information on protein-protein interactions from the biological literature.\n                           Bioinformatics 2001, 17: 155\u2013161. 10.1093\/bioinformatics\/17.2.155","journal-title":"Bioinformatics"},{"key":"61_CR13","doi-asserted-by":"publisher","first-page":"359","DOI":"10.1093\/bioinformatics\/17.4.359","volume":"17","author":"EM Marcotte","year":"2001","unstructured":"Marcotte EM, Xenarios I, Eisenberg D: Mining literature for protein-protein interactions.\n                           Bioinformatics 2001, 17: 359\u2013363. 10.1093\/bioinformatics\/17.4.359","journal-title":"Bioinformatics"},{"key":"61_CR14","first-page":"520","volume-title":"Pac Symp Biocomput","author":"L Wong","year":"2001","unstructured":"Wong L: PIES, a protein interaction extraction system.\n                           Pac Symp Biocomput 2001, 520\u2013531."},{"key":"61_CR15","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1093\/nar\/29.1.137","volume":"29","author":"KD Pruitt","year":"2001","unstructured":"Pruitt KD, Maglott DR: RefSeq and LocusLink: NCBI gene-centered resources.\n                           Nucleic Acids Res 2001, 29: 137\u2013140. 10.1093\/nar\/29.1.137","journal-title":"Nucleic Acids Res"},{"key":"61_CR16","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1093\/nar\/30.1.69","volume":"30","author":"SS Dwight","year":"2002","unstructured":"Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM: Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).\n                           Nucleic Acids Res 2002, 30: 69\u201372. 10.1093\/nar\/30.1.69","journal-title":"Nucleic Acids Res"},{"key":"61_CR17","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1002\/0471223921.ch2","volume-title":"Bioinformatics","author":"JM Ostell","year":"2001","unstructured":"Ostell JM, Wheelan SJ, Kans JA: The NCBI data model.\n                           Bioinformatics\n                           2nd Edition\n                           (Edited by: Baxevanis AD and Ouellette B F). New York, John Wiley and Sons, Inc. 2001, 43: 19\u201343. 10.1002\/0471223921.ch2","edition":"2nd"},{"key":"61_CR18","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1093\/nar\/30.1.13","volume":"30","author":"DL Wheeler","year":"2002","unstructured":"Wheeler DL, Church DM, Lash AE, Leipe DD, Madden TL, Pontius JU, Schuler GD, Schriml LM, Tatusova TA, Wagner L, Rapp BA: Database resources of the National Center for Biotechnology Information: 2002 update.\n                           Nucleic Acids Res 2002, 30: 13\u201316. 10.1093\/nar\/30.1.13","journal-title":"Nucleic Acids Res"},{"key":"61_CR19","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1023\/A:1022627411411","volume":"20","author":"C Cortes","year":"1995","unstructured":"Cortes C, Vapnik V: Support-Vector Networks.\n                           Machine Learning 1995, 20: 273\u2013297. 10.1023\/A:1022627411411","journal-title":"Machine Learning"},{"key":"61_CR20","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1007\/BFb0026683","volume-title":"Machine Learning: ECML-98, Tenth European Conference on Machine Learning","author":"T Joachims","year":"1998","unstructured":"Joachims T: Text categorization with Support Vector Machines: Learning with many relevant features.\n                           Machine Learning: ECML-98, Tenth European Conference on Machine Learning. 1998, 137\u2013142."},{"key":"61_CR21","first-page":"148","volume-title":"Proceedings of the International Conference on Information and Knowledge Management","author":"S Dumais","year":"1998","unstructured":"Dumais S, Platt J, Heckerman D, Sahami M: Inductive learning algorithms and representations for text categorization.\n                           Proceedings of the International Conference on Information and Knowledge Management. 1998, 148\u2013155."},{"key":"61_CR22","first-page":"450","volume-title":"Proceedings of the American Society for Information Science and Technology Annual Meeting. ASIST","author":"B de Bruijn","year":"2001","unstructured":"de Bruijn B, Martin J, Wolting C, Donaldson I: Extracting sentences to justify categorization.\n                           Proceedings of the American Society for Information Science and Technology Annual Meeting. ASIST. 2001, 450\u2013457."},{"key":"61_CR23","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1093\/nar\/gkg095","volume":"31","author":"B Boeckmann","year":"2003","unstructured":"Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M: The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.\n                           Nucleic Acids Res 2003, 31: 365\u2013370. 10.1093\/nar\/gkg095","journal-title":"Nucleic Acids Res"},{"key":"61_CR24","first-page":"707","volume-title":"Pac Symp Biocomput","author":"K Fukuda","year":"1998","unstructured":"Fukuda K, Tamura A, Tsunoda T, Takagi T: Toward information extraction: identifying protein names from biological papers.\n                           Pac Symp Biocomput 1998, 707\u2013718."},{"key":"61_CR25","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1186\/1471-2105-3-32","volume":"3","author":"K Michalickova","year":"2002","unstructured":"Michalickova K, Bader GD, Dumontier M, Lieu HC, Betel D, Isserlin R, Hogue CW: SeqHound: biological sequence and structure database as a platform for bioinformatics research.\n                           BMC Bioinformatics 2002, 3: 32. 10.1186\/1471-2105-3-32","journal-title":"BMC Bioinformatics"},{"key":"61_CR26","volume-title":"The SMART Retrieval System.","author":"G Salton","year":"1971","unstructured":"Salton G: The SMART Retrieval System. Englewood Cliffs, NJ, Prentice Hall 1971."},{"key":"61_CR27","first-page":"414","volume-title":"Machine Learning","author":"T Mitchell","year":"1997","unstructured":"Mitchell T: Machine Learning.\n                           1st Edition McGraw-Hill 1997, 414.","edition":"1st"},{"key":"61_CR28","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1093\/nar\/30.1.31","volume":"30","author":"HW Mewes","year":"2002","unstructured":"Mewes HW, Frishman D, Guldener U, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B, Munsterkotter M, Rudd S, Weil B: MIPS: a database for genomes and protein sequences.\n                           Nucleic Acids Res 2002, 30: 31\u201334. 10.1093\/nar\/30.1.31","journal-title":"Nucleic Acids Res"},{"key":"61_CR29","doi-asserted-by":"publisher","first-page":"180","DOI":"10.1038\/415180a","volume":"415","author":"Y Ho","year":"2002","unstructured":"Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, Jespersen H, Podtelejnikov A, Nielsen E, Crawford J, Poulsen V, Sorensen BD, Matthiesen J, Hendrickson RC, Gleeson F, Pawson T, Moran MF, Durocher D, Mann M, Hogue CW, Figeys D, Tyers M: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.\n                           Nature 2002, 415: 180\u2013183. 10.1038\/415180a","journal-title":"Nature"},{"key":"61_CR30","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1038\/nbt1002-991","volume":"20","author":"GD Bader","year":"2002","unstructured":"Bader GD, Hogue CW: Analyzing yeast protein-protein interaction data obtained from different sources.\n                           Nat Biotechnol 2002, 20: 991\u2013997. 10.1038\/nbt1002-991","journal-title":"Nat Biotechnol"},{"key":"61_CR31","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1002\/0471223921.ch2","volume":"43","author":"JM Ostell","year":"2001","unstructured":"Ostell JM, Wheelan SJ, Kans JA: The NCBI data model.\n                           Methods Biochem Anal 2001, 43: 19\u201343. 10.1002\/0471223921.ch2","journal-title":"Methods Biochem Anal"},{"key":"61_CR32","volume-title":"http:\/\/www.cs.cmu.edu\/~mccallum\/bow","author":"Andrew Kachites McCallum","year":"1996","unstructured":"McCallum Andrew Kachites: Bow: A toolkit for statistical language modeling, text retrieval, classification and clustering.\n                           http:\/\/www.cs.cmu.edu\/~mccallum\/bow 1996."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-4-11.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T15:53:50Z","timestamp":1726242830000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-4-11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,3,27]]},"references-count":32,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2003,12]]}},"alternative-id":["61"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-4-11","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2003,3,27]]},"assertion":[{"value":"28 December 2002","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 March 2003","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 March 2003","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"11"}}