{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,20]],"date-time":"2025-10-20T10:03:15Z","timestamp":1760954595957},"reference-count":49,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"DOI":"10.1186\/1471-2105-5-23","type":"journal-article","created":{"date-parts":[[2004,3,9]],"date-time":"2004-03-09T07:23:46Z","timestamp":1078817026000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models"],"prefix":"10.1186","volume":"5","author":[{"given":"Shaun","family":"Mahony","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"James O","family":"McInerney","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Terry J","family":"Smith","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aaron","family":"Golden","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2004,3,5]]},"reference":[{"key":"139_CR1","doi-asserted-by":"publisher","first-page":"4103","DOI":"10.1093\/nar\/gkf543","volume":"30","author":"C Mathe","year":"2002","unstructured":"Mathe C, Sagot MF, Schiex T, Rouze P: Current methods of gene prediction, their strengths and weaknesses.\n                           Nucleic Acids Res 2002, 30: 4103\u20134117. 10.1093\/nar\/gkf543","journal-title":"Nucleic Acids Res"},{"key":"139_CR2","doi-asserted-by":"publisher","first-page":"1735","DOI":"10.1093\/hmg\/6.10.1735","volume":"6","author":"JM Claverie","year":"1997","unstructured":"Claverie JM: Computational methods for the identification of genes in vertebrate genomic sequences.\n                           Hum Mol Genet 1997, 6: 1735\u20131744. 10.1093\/hmg\/6.10.1735","journal-title":"Hum Mol Genet"},{"key":"139_CR3","doi-asserted-by":"publisher","first-page":"316","DOI":"10.1016\/0168-9525(96)10038-X","volume":"12","author":"JW Fickett","year":"1996","unstructured":"Fickett JW: Finding genes by computer: the state of the art.\n                           Trends Genet 1996, 12: 316\u2013320. 10.1016\/0168-9525(96)10038-X","journal-title":"Trends Genet"},{"key":"139_CR4","doi-asserted-by":"publisher","first-page":"1107","DOI":"10.1093\/nar\/26.4.1107","volume":"26","author":"AV Lukashin","year":"1998","unstructured":"Lukashin AV, Borodovsky M: GeneMark.hmm: new solutions for gene finding.\n                           Nucleic Acids Res 1998, 26: 1107\u20131115. 10.1093\/nar\/26.4.1107","journal-title":"Nucleic Acids Res"},{"key":"139_CR5","doi-asserted-by":"publisher","first-page":"4636","DOI":"10.1093\/nar\/27.23.4636","volume":"27","author":"AL Delcher","year":"1999","unstructured":"Delcher AL, Harmon D, Kasif S, White O, Salzberg SL: Improved microbial gene identification with GLIMMER.\n                           Nucleic Acids Res 1999, 27: 4636\u20134641. 10.1093\/nar\/27.23.4636","journal-title":"Nucleic Acids Res"},{"key":"139_CR6","doi-asserted-by":"publisher","first-page":"1631","DOI":"10.1101\/gr.122800","volume":"10","author":"R Guigo","year":"2000","unstructured":"Guigo R, Agarwal P, Abril JF, Burset M, Fickett JW: An assessment of gene prediction accuracy in large DNA sequences.\n                           Genome Res 2000, 10: 1631\u20131642. 10.1101\/gr.122800","journal-title":"Genome Res"},{"key":"139_CR7","doi-asserted-by":"publisher","first-page":"398","DOI":"10.1101\/gr.10.4.398","volume":"10","author":"P Bork","year":"2000","unstructured":"Bork P: Powers and pitfalls in sequence analysis: the 70% hurdle.\n                           Genome Res 2000, 10: 398\u2013400. 10.1101\/gr.10.4.398","journal-title":"Genome Res"},{"key":"139_CR8","doi-asserted-by":"publisher","first-page":"483","DOI":"10.1101\/gr.10.4.483","volume":"10","author":"MG Reese","year":"2000","unstructured":"Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE: Genome annotation assessment in Drosophila melanogaster.\n                           Genome Res 2000, 10: 483\u2013501. 10.1101\/gr.10.4.483","journal-title":"Genome Res"},{"key":"139_CR9","doi-asserted-by":"publisher","first-page":"1034","DOI":"10.1093\/bioinformatics\/18.8.1034","volume":"18","author":"S Rogic","year":"2002","unstructured":"Rogic S, Ouellette BF, Mackworth AK: Improving gene recognition accuracy by combining predictions from two gene-finding programs.\n                           Bioinformatics 2002, 18: 1034\u20131045. 10.1093\/bioinformatics\/18.8.1034","journal-title":"Bioinformatics"},{"key":"139_CR10","doi-asserted-by":"publisher","first-page":"3554","DOI":"10.1093\/nar\/23.17.3554","volume":"23","author":"M Borodovsky","year":"1995","unstructured":"Borodovsky M, McIninch JD, Koonin EV, Rudd KE, Medigue C, Danchin A: Detection of new genes in a bacterial genome using Markov models for three gene classes.\n                           Nucleic Acids Res 1995, 23: 3554\u20133562.","journal-title":"Nucleic Acids Res"},{"key":"139_CR11","doi-asserted-by":"publisher","first-page":"293","DOI":"10.1016\/S0168-1656(00)00196-6","volume":"78","author":"C Mathe","year":"2000","unstructured":"Mathe C, Dehais P, Pavy N, Rombauts S, Van Montagu M, Rouze P: Gene prediction and gene classes in Arabidopsis thaliana.\n                           J Biotechnol 2000, 78: 293\u2013299. 10.1016\/S0168-1656(00)00196-6","journal-title":"J Biotechnol"},{"key":"139_CR12","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1016\/0022-2836(81)90003-6","volume":"151","author":"Toshimichi Ikemura","year":"1981","unstructured":"Ikemura Toshimichi: Correlation between the Abundance of Escherichia coli Transfer RNAs and the Occurance of the Respective Codons in its Protein Genes: A Proposal for a Synonymous Codon Choice that is Optimal for the E. coli Translational System.\n                           J. Mol. Biol. 1981, 151: 389\u2013409.","journal-title":"J. Mol. Biol"},{"key":"139_CR13","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1093\/genetics\/129.3.897","volume":"129","author":"M Bulmer","year":"1991","unstructured":"Bulmer M: The selection-mutation-drift theory of synonymous codon usage.\n                           Genetics 1991, 129: 897\u2013907.","journal-title":"Genetics"},{"key":"139_CR14","doi-asserted-by":"publisher","first-page":"835","DOI":"10.1042\/bst0210835","volume":"21","author":"Paul M. Sharp","year":"1993","unstructured":"Sharp Paul M., Stenico Michele, Peden John F., Lloyd Andrew T.: Codon usage: mutational bias, translational selection, or both?\n                           Biochem. Soc. Trans. 1993, 21: 835\u2013841.","journal-title":"Biochem. Soc. Trans"},{"key":"139_CR15","doi-asserted-by":"publisher","first-page":"640","DOI":"10.1016\/S0959-437X(02)00353-2","volume":"12","author":"L Duret","year":"2002","unstructured":"Duret L: Evolution of synonymous codon usage in metazoans.\n                           Curr Opin Genet Dev 2002, 12: 640\u2013649. 10.1016\/S0959-437X(02)00353-2","journal-title":"Curr Opin Genet Dev"},{"key":"139_CR16","doi-asserted-by":"publisher","first-page":"660","DOI":"10.1093\/oxfordjournals.molbev.a025626","volume":"13","author":"JR Lobry","year":"1996","unstructured":"Lobry JR: Asymmetric substitution patterns in the two DNA strands of bacteria.\n                           Mol Biol Evol 1996, 13: 660\u2013665.","journal-title":"Mol Biol Evol"},{"key":"139_CR17","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1016\/S0168-9525(97)01118-9","volume":"13","author":"MP Francino","year":"1997","unstructured":"Francino MP, Ochman H: Strand asymmetries in DNA evolution.\n                           Trends Genet 1997, 13: 240\u2013245. 10.1016\/S0168-9525(97)01118-9","journal-title":"Trends Genet"},{"key":"139_CR18","doi-asserted-by":"publisher","first-page":"10698","DOI":"10.1073\/pnas.95.18.10698","volume":"95","author":"James O. McInerney","year":"1998","unstructured":"McInerney James O.: Replicational and transcriptional selection on codon usage in Borrelia burgdorferi.\n                           Proc. Natl. Acad. Sci. 1998, 95: 10698\u201310703. 10.1073\/pnas.95.18.10698","journal-title":"Proc. Natl. Acad. Sci"},{"key":"139_CR19","doi-asserted-by":"publisher","first-page":"3720","DOI":"10.1073\/pnas.95.7.3720","volume":"95","author":"J Mrazek","year":"1998","unstructured":"Mrazek J, Karlin S: Strand compositional asymmetry in bacterial and large viral genomes.\n                           Proc Natl Acad Sci U S A 1998, 95: 3720\u20133725. 10.1073\/pnas.95.7.3720","journal-title":"Proc Natl Acad Sci U S A"},{"key":"139_CR20","doi-asserted-by":"publisher","first-page":"1642","DOI":"10.1093\/nar\/27.7.1642","volume":"27","author":"B Lafay","year":"1999","unstructured":"Lafay B, Lloyd AT, McLean MJ, Devine KM, Sharp PM, Wolfe KH: Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.\n                           Nucleic Acids Res 1999, 27: 1642\u20131649. 10.1093\/nar\/27.7.1642","journal-title":"Nucleic Acids Res"},{"key":"139_CR21","doi-asserted-by":"publisher","first-page":"691","DOI":"10.1007\/PL00006428","volume":"47","author":"Michael J. McLean","year":"1998","unstructured":"McLean Michael J., Wolfe Kenneth H., Devine Kevin M.: Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes.\n                           J. Mol. Evol. 1998, 47: 691\u2013696.","journal-title":"J. Mol. Evol"},{"key":"139_CR22","doi-asserted-by":"publisher","first-page":"1838","DOI":"10.1093\/oxfordjournals.molbev.a003972","volume":"18","author":"S Guindon","year":"2001","unstructured":"Guindon S, Perriere G: Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes.\n                           Mol Biol Evol 2001, 18: 1838\u20131840.","journal-title":"Mol Biol Evol"},{"key":"139_CR23","doi-asserted-by":"publisher","first-page":"4482","DOI":"10.1073\/pnas.96.8.4482","volume":"96","author":"L Duret","year":"1999","unstructured":"Duret L, Mouchiroud D: Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.\n                           Proc Natl Acad Sci U S A 1999, 96: 4482\u20134487. 10.1073\/pnas.96.8.4482","journal-title":"Proc Natl Acad Sci U S A"},{"key":"139_CR24","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1093\/genetics\/159.1.347","volume":"159","author":"BR Morton","year":"2001","unstructured":"Morton BR: Selection at the amino acid level can influence synonymous codon usage: implications for the study of codon adaptation in plastid genes.\n                           Genetics 2001, 159: 347\u2013358.","journal-title":"Genetics"},{"key":"139_CR25","doi-asserted-by":"crossref","first-page":"1154","DOI":"10.1101\/gr.8.11.1154","volume":"8","author":"WS Hayes","year":"1998","unstructured":"Hayes WS, Borodovsky M: How to interpret an anonymous bacterial genome: machine learning approach to gene identification.\n                           Genome Res 1998, 8: 1154\u20131171.","journal-title":"Genome Res"},{"key":"139_CR26","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1089\/10665270050081504","volume":"7","author":"F Rodolphe","year":"2000","unstructured":"Rodolphe F, Mathe C: Translation conditional models for protein coding sequences.\n                           J Comput Biol 2000, 7: 249\u2013260. 10.1089\/10665270050081504","journal-title":"J Comput Biol"},{"key":"139_CR27","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-97610-0","volume-title":"Self-Organizing Maps","author":"T Kohonen","year":"1995","unstructured":"Kohonen T: Self-Organizing Maps. Berlin, Springer-Verlag 1995."},{"key":"139_CR28","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1016\/S0378-1119(01)00673-4","volume":"276","author":"S Kanaya","year":"2001","unstructured":"Kanaya S, Kinouchi M, Abe T, Kudo Y, Yamada Y, Nishi T, Mori H, Ikemura T: Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome.\n                           Gene 2001, 276: 89\u201399. 10.1016\/S0378-1119(01)00673-4","journal-title":"Gene"},{"key":"139_CR29","doi-asserted-by":"publisher","first-page":"792","DOI":"10.1093\/oxfordjournals.molbev.a003861","volume":"18","author":"HC Wang","year":"2001","unstructured":"Wang HC, Badger J, Kearney P, Li M: Analysis of codon usage patterns of bacterial genomes using the self-organizing map.\n                           Mol Biol Evol 2001, 18: 792\u2013800.","journal-title":"Mol Biol Evol"},{"key":"139_CR30","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1101\/gr.634603","volume":"13","author":"T Abe","year":"2003","unstructured":"Abe T, Kanaya S, Kinouchi M, Ichiba Y, Kozuki T, Ikemura T: Informatics for unveiling hidden genome signatures.\n                           Genome Res 2003, 13: 693\u2013702. 10.1101\/gr.634603","journal-title":"Genome Res"},{"key":"139_CR31","doi-asserted-by":"publisher","first-page":"404","DOI":"10.1093\/oxfordjournals.molbev.a003816","volume":"18","author":"Liisa B. Koski","year":"2001","unstructured":"Koski Liisa B., Morton Richard A., Golding G. Brian: Codon Bias and Base Composition Are Poor Indicators of Horizontally Transferred Genes.\n                           Mol Biol Evol 2001, 18: 404\u2013412.","journal-title":"Mol Biol Evol"},{"key":"139_CR32","doi-asserted-by":"publisher","first-page":"2607","DOI":"10.1093\/nar\/29.12.2607","volume":"29","author":"J Besemer","year":"2001","unstructured":"Besemer J, Lomsadze A, Borodovsky M: GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.\n                           Nucleic Acids Res 2001, 29: 2607\u20132618. 10.1093\/nar\/29.12.2607","journal-title":"Nucleic Acids Res"},{"key":"139_CR33","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1038\/32831","volume":"392","author":"G Deckert","year":"1998","unstructured":"Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M, Huber R, Feldman RA, Short JM, Olsen GJ, Swanson RV: The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.\n                           Nature 1998, 392: 353\u2013358. 10.1038\/32831","journal-title":"Nature"},{"key":"139_CR34","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1038\/36786","volume":"390","author":"F Kunst","year":"1997","unstructured":"Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessieres P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Codani JJ, Connerton IF, Danchin A: The complete genome sequence of the gram-positive bacterium Bacillus subtilis.\n                           Nature 1997, 390: 249\u2013256. 10.1038\/36786","journal-title":"Nature"},{"key":"139_CR35","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1038\/35024074","volume":"407","author":"S Shigenobu","year":"2000","unstructured":"Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H: Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.\n                           Nature 2000, 407: 81\u201386. 10.1038\/35024074","journal-title":"Nature"},{"key":"139_CR36","doi-asserted-by":"publisher","first-page":"580","DOI":"10.1038\/37551","volume":"390","author":"CM Fraser","year":"1997","unstructured":"Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, Adams MD, Gocayne J, Venter JC: Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi.\n                           Nature 1997, 390: 580\u2013586. 10.1038\/37551","journal-title":"Nature"},{"key":"139_CR37","doi-asserted-by":"publisher","first-page":"665","DOI":"10.1038\/35001088","volume":"403","author":"J Parkhill","year":"2000","unstructured":"Parkhill J, Wren BW, Mungall K, Ketley JM, Churcher C, Basham D, Chillingworth T, Davies RM, Feltwell T, Holroyd S, Jagels K, Karlyshev AV, Moule S, Pallen MJ, Penn CW, Quail MA, Rajandream MA, Rutherford KM, van Vliet AH, Whitehead S, Barrell BG: The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.\n                           Nature 2000, 403: 665\u2013668. 10.1038\/35001088","journal-title":"Nature"},{"key":"139_CR38","doi-asserted-by":"publisher","first-page":"1571","DOI":"10.1126\/science.286.5444.1571","volume":"286","author":"O White","year":"1999","unstructured":"White O, Eisen JA, Heidelberg JF, Hickey EK, Peterson JD, Dodson RJ, Haft DH, Gwinn ML, Nelson WC, Richardson DL, Moffat KS, Qin H, Jiang L, Pamphile W, Crosby M, Shen M, Vamathevan JJ, Lam P, McDonald L, Utterback T, Zalewski C, Makarova KS, Aravind L, Daly MJ, Fraser CM: Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.\n                           Science 1999, 286: 1571\u20131577. 10.1126\/science.286.5444.1571","journal-title":"Science"},{"key":"139_CR39","doi-asserted-by":"publisher","first-page":"1453","DOI":"10.1126\/science.277.5331.1453","volume":"277","author":"FR Blattner","year":"1997","unstructured":"Blattner FR, Plunkett G., 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12.\n                           Science 1997, 277: 1453\u20131474. 10.1126\/science.277.5331.1453","journal-title":"Science"},{"key":"139_CR40","doi-asserted-by":"publisher","first-page":"496","DOI":"10.1126\/science.7542800","volume":"269","author":"RD Fleischmann","year":"1995","unstructured":"Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM: Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.\n                           Science 1995, 269: 496\u2013512.","journal-title":"Science"},{"key":"139_CR41","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1038\/41483","volume":"388","author":"JF Tomb","year":"1997","unstructured":"Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk HP, Gill S, Dougherty BA, Nelson K, Quackenbush J, Zhou L, Kirkness EF, Peterson S, Loftus B, Richardson D, Dodson R, Khalak HG, Glodek A, McKenney K, Fitzegerald LM, Lee N, Adams MD, Venter JC: The complete genome sequence of the gastric pathogen Helicobacter pylori.\n                           Nature 1997, 388: 539\u2013547. 10.1038\/41483","journal-title":"Nature"},{"key":"139_CR42","doi-asserted-by":"publisher","first-page":"397","DOI":"10.1126\/science.270.5235.397","volume":"270","author":"CM Fraser","year":"1995","unstructured":"Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM: The minimal gene complement of Mycoplasma genitalium.\n                           Science 1995, 270: 397\u2013403.","journal-title":"Science"},{"key":"139_CR43","doi-asserted-by":"publisher","first-page":"1058","DOI":"10.1126\/science.273.5278.1058","volume":"273","author":"CJ Bult","year":"1996","unstructured":"Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, Scott JL, Geoghagen NS, Venter JC: Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.\n                           Science 1996, 273: 1058\u20131073.","journal-title":"Science"},{"key":"139_CR44","doi-asserted-by":"publisher","first-page":"497","DOI":"10.1038\/415497a","volume":"415","author":"M Salanoubat","year":"2002","unstructured":"Salanoubat M, Genin S, Artiguenave F, Gouzy J, Mangenot S, Arlat M, Billault A, Brottier P, Camus JC, Cattolico L, Chandler M, Choisne N, Claudel-Renard C, Cunnac S, Demange N, Gaspin C, Lavie M, Moisan A, Robert C, Saurin W, Schiex T, Siguier P, Thebault P, Whalen M, Wincker P, Levy M, Weissenbach J, Boucher CA: Genome sequence of the plant pathogen Ralstonia solanacearum.\n                           Nature 2002, 415: 497\u2013502. 10.1038\/415497a","journal-title":"Nature"},{"key":"139_CR45","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1038\/417141a","volume":"417","author":"SD Bentley","year":"2002","unstructured":"Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA: Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).\n                           Nature 2002, 417: 141\u2013147. 10.1038\/417141a","journal-title":"Nature"},{"key":"139_CR46","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1093\/dnares\/3.3.109","volume":"3","author":"T Kaneko","year":"1996","unstructured":"Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S, Kimura T, Hosouchi T, Matsuno A, Muraki A, Nakazaki N, Naruo K, Okumura S, Shimpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.\n                           DNA Res 1996, 3: 109\u2013136.","journal-title":"DNA Res"},{"key":"139_CR47","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1038\/35097083","volume":"413","author":"J Parkhill","year":"2001","unstructured":"Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K, Cerdeno-Tarraga AM, Chillingworth T, Cronin A, Davies RM, Davis P, Dougan G, Feltwell T, Hamlin N, Holroyd S, Jagels K, Karlyshev AV, Leather S, Moule S, Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG: Genome sequence of Yersinia pestis, the causative agent of plague.\n                           Nature 2001, 413: 523\u2013527. 10.1038\/35097083","journal-title":"Nature"},{"key":"139_CR48","doi-asserted-by":"publisher","first-page":"6441","DOI":"10.1093\/nar\/20.24.6441","volume":"20","author":"JW Fickett","year":"1992","unstructured":"Fickett JW, Tung CS: Assessment of protein coding measures.\n                           Nucleic Acids Res 1992, 20: 6441\u20136450.","journal-title":"Nucleic Acids Res"},{"key":"139_CR49","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","volume":"16","author":"K Rutherford","year":"2000","unstructured":"Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B: Artemis: sequence visualization and annotation.\n                           Bioinformatics 2000, 16: 944\u2013945. 10.1093\/bioinformatics\/16.10.944","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-5-23.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T16:01:12Z","timestamp":1726243272000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-5-23"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,3,5]]},"references-count":49,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2004,12]]}},"alternative-id":["139"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-5-23","relation":{},"ISSN":["1471-2105"],"issn-type":[{"type":"electronic","value":"1471-2105"}],"subject":[],"published":{"date-parts":[[2004,3,5]]},"assertion":[{"value":"26 November 2003","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 March 2004","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 March 2004","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"23"}}