{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T20:27:35Z","timestamp":1761596855152},"reference-count":30,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"DOI":"10.1186\/1471-2105-5-64","type":"journal-article","created":{"date-parts":[[2004,5,25]],"date-time":"2004-05-25T06:22:39Z","timestamp":1085466159000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":38,"title":["Feature selection for splice site prediction: A new method using EDA-based feature ranking"],"prefix":"10.1186","volume":"5","author":[{"given":"Yvan","family":"Saeys","sequence":"first","affiliation":[]},{"given":"Sven","family":"Degroeve","sequence":"additional","affiliation":[]},{"given":"Dirk","family":"Aeyels","sequence":"additional","affiliation":[]},{"given":"Pierre","family":"Rouz\u00e9","sequence":"additional","affiliation":[]},{"given":"Yves","family":"Van de Peer","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2004,5,21]]},"reference":[{"key":"180_CR1","volume-title":"Diploma thesis, Humbold-Universit\u00e4t zu Berlin","author":"S Sonnenburg","year":"2002","unstructured":"Sonnenburg S: New Methods for Splice Site recognition.\n                           Diploma thesis, Humbold-Universit\u00e4t zu Berlin 2002."},{"key":"180_CR2","doi-asserted-by":"publisher","first-page":"4103","DOI":"10.1093\/nar\/gkf543","volume":"30","author":"C Math\u00e9","year":"2002","unstructured":"Math\u00e9 C, Sagot MF, Schiex T, Rouz\u00e9 P: Current methods of gene prediction, their strengths and weaknesses.\n                           Nucleic Acids Res 2002, 30: 4103\u20134117. 10.1093\/nar\/gkf543","journal-title":"Nucleic Acids Res"},{"key":"180_CR3","doi-asserted-by":"publisher","first-page":"698","DOI":"10.1038\/nrg890","volume":"3","author":"MQ Zhang","year":"2002","unstructured":"Zhang MQ: Computational prediction of eukaryotic protein-coding genes.\n                           Nat Rev Genet 2002, 3: 698\u2013709. 10.1038\/nrg890","journal-title":"Nat Rev Genet"},{"key":"180_CR4","first-page":"322","volume-title":"In Proceedings of RECOMB 2003","author":"G Yeo","year":"2003","unstructured":"Yeo G, Burge CB: Maximum entropy modelling of short sequence motifs with applications to RNA splicing signals.\n                           In Proceedings of RECOMB 2003 2003, 322\u2013331."},{"key":"180_CR5","doi-asserted-by":"publisher","first-page":"2637","DOI":"10.1101\/gr.1679003","volume":"13","author":"X Zhang","year":"2003","unstructured":"Zhang X, Heller K, Hefter I, Leslie C, Chasin L: Sequence Information for the Splicing of Human pre-mRNA Identified by Support Vector Machine Classification.\n                           Genome Res 2003, 13: 2637\u20132650. 10.1101\/gr.1679003","journal-title":"Genome Res"},{"key":"180_CR6","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/S0031-3203(99)00041-2","volume":"33","author":"M Kudo","year":"2000","unstructured":"Kudo M, Sklansky J: Comparison of algorithms that select features for pattern classifiers.\n                           Pattern Recogn 2000, 33: 25\u201341. 10.1016\/S0031-3203(99)00041-2","journal-title":"Pattern Recogn"},{"key":"180_CR7","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1142\/S0218001488000145","volume":"2","author":"W Siedelecky","year":"1988","unstructured":"Siedelecky W, Sklansky J: On automatic feature selection.\n                           Int J Pattern Recogn 1988, 2: 197\u2013220.","journal-title":"Int J Pattern Recogn"},{"key":"180_CR8","first-page":"356","volume-title":"In Proceedings of the Fifth International Conference on Tools with Artificial Intelligence","author":"H Vafaie","year":"1993","unstructured":"Vafaie H, De Jong K: Robust feature selection algorithms.\n                           In Proceedings of the Fifth International Conference on Tools with Artificial Intelligence 1993, 356\u2013363."},{"key":"180_CR9","first-page":"178","volume-title":"In Lecture Notes in Computer Science 1411: Parallel Problem Solving from Nature, PPSN IV","author":"H M\u00fchlenbein","year":"1996","unstructured":"M\u00fchlenbein H, Paass G: From recombination of genes to the estimation of distributions. Binary parameters.\n                           In Lecture Notes in Computer Science 1411: Parallel Problem Solving from Nature, PPSN IV 1996, 178\u2013187."},{"key":"180_CR10","volume-title":"Estimation of Distribution Algorithms. A New Tool for Evolutionary Computation","author":"P Larra\u00f1aga","year":"2001","unstructured":"Larra\u00f1aga P, Lozano JA: Estimation of Distribution Algorithms. A New Tool for Evolutionary Computation Kluwer Academic Publishers 2001."},{"key":"180_CR11","volume-title":"In Proceedings of the 16th Annual Conference on Uncertainty in Artificial Intelligence (UAI-00)","author":"P Larra\u00f1aga","year":"2000","unstructured":"Larra\u00f1aga P, Etxebarria R, Lozano J, Pe\u00f1a J: Combinatorial Optimization by Learning and Simulation of Bayesian Networks.\n                           In Proceedings of the 16th Annual Conference on Uncertainty in Artificial Intelligence (UAI-00) Morgan Kaufmann Publishers 2000."},{"key":"180_CR12","first-page":"143","volume":"27","author":"I Inza","year":"1999","unstructured":"Inza I, Larra\u00f1aga P, Etxebarria R, Sierra B: Feature subset selection by Bayesian networks based optimization.\n                           Artif Intell 1999, 27: 143\u2013164.","journal-title":"Artif Intell"},{"issue":"Suppl 2","key":"180_CR13","doi-asserted-by":"publisher","first-page":"II179","DOI":"10.1093\/bioinformatics\/btg1076","volume":"19","author":"Y Saeys","year":"2003","unstructured":"Saeys Y, Degroeve S, Aeyels D, Van de Peer Y, Rouz\u00e9 P: Fast feature selection using a simple Estimation of Distribution Algorithm: A case study on splice site prediction.\n                           Bioinformatics 2003, 19(Suppl 2):II179-II188.","journal-title":"Bioinformatics"},{"issue":"Suppl 2","key":"180_CR14","doi-asserted-by":"publisher","first-page":"S75","DOI":"10.1093\/bioinformatics\/18.suppl_2.S75","volume":"18","author":"S Degroeve","year":"2002","unstructured":"Degroeve S, De Baets B, Van de Peer Y, Rouz\u00e9 P: Feature subset selection for splice site prediction.\n                           Bioinformatics 2002, 18(Suppl 2):S75-S83.","journal-title":"Bioinformatics"},{"key":"180_CR15","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1162\/evco.1997.5.3.303","volume":"5","author":"H Muhlenbein","year":"1997","unstructured":"Muhlenbein H: The equation for response to selection and its use for prediction.\n                           Evol Comput 1997, 5: 303\u2013346.","journal-title":"Evol Comput"},{"key":"180_CR16","first-page":"523","volume-title":"In Proceedings of the International Conference on Evolutionary Computation","author":"GR Harik","year":"1998","unstructured":"Harik GR, Lobo GG, Goldberg DE: The compact genetic algorithm.\n                           In Proceedings of the International Conference on Evolutionary Computation 1998, 523\u2013528."},{"key":"180_CR17","first-page":"754","volume-title":"In Proceedings of the Genetic and Evolutionary Computation Conference","author":"E Cant\u00fa-Paz","year":"2002","unstructured":"Cant\u00fa-Paz E: Feature subset selection by estimation of distribution algorithms.\n                           In Proceedings of the Genetic and Evolutionary Computation Conference 2002, 754\u2013761."},{"key":"180_CR18","first-page":"144","volume-title":"In Proceedings of COLT","author":"B Boser","year":"1992","unstructured":"Boser B, Guyon I, Vapnik VN: A training algorithm for optimal margin classifiers.\n                           In Proceedings of COLT 1992, 144\u2013152."},{"key":"180_CR19","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4757-2440-0","volume-title":"The nature of statistical learning theory. Springer-Verlag","author":"VN Vapnik","year":"1995","unstructured":"Vapnik VN: The nature of statistical learning theory. Springer-Verlag 1995."},{"key":"180_CR20","volume-title":"Pattern Classification and scene analysis","author":"RO Duda","year":"1973","unstructured":"Duda RO, Hart PE: Pattern Classification and scene analysis New York, NY, Wiley 1973."},{"key":"180_CR21","first-page":"399","volume-title":"In Proceedings of the Tenth Conference on Uncertainty in Artificial Intelligence","author":"P Langley","year":"1994","unstructured":"Langley P, Sage S: Induction of selective Bayesian classifiers.\n                           In Proceedings of the Tenth Conference on Uncertainty in Artificial Intelligence 1994, 399\u2013406."},{"key":"180_CR22","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1023\/A:1012487302797","volume":"46","author":"I Guyon","year":"2002","unstructured":"Guyon I, Weston J, Barnhill S, Vapnik VN: Gene Selection for Cancer Classification using Support Vector Machines.\n                           Mach Learn 2002, 46: 389\u2013422. 10.1023\/A:1012487302797","journal-title":"Mach Learn"},{"key":"180_CR23","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1016\/S0004-3702(97)00043-X","volume":"97","author":"R Kohavi","year":"1997","unstructured":"Kohavi R, John G: Wrappers for feature subset selection.\n                           Artif Intell 1997, 97: 273\u2013324. 10.1016\/S0004-3702(97)00043-X","journal-title":"Artif Intell"},{"key":"180_CR24","first-page":"284","volume-title":"In Proceedings of the 13th International Conference on Machine Learning","author":"D Koller","year":"1996","unstructured":"Koller D, Sahami M: Toward optimal feature selection.\n                           In Proceedings of the 13th International Conference on Machine Learning 1996, 284\u2013292."},{"key":"180_CR25","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/S0167-9236(02)00097-0","volume":"35","author":"D Mladenic","year":"2003","unstructured":"Mladenic D, Grobelnik M: Feature selection on hierarchy of web documents.\n                           Decis Support Syst 2003, 35: 45\u201387. 10.1016\/S0167-9236(02)00097-0","journal-title":"Decis Support Syst"},{"key":"180_CR26","volume-title":"Advances in Kernel Methods: Support Vector Machines","author":"T Joachims","year":"1998","unstructured":"Joachims T: Making large-scale support vector machine learning practical.\n                           Advances in Kernel Methods: Support Vector Machines\n                           (Edited by: Schoelkopf B, Burges C). Cambridge, MA: MIT Press 1998."},{"key":"180_CR27","unstructured":"MPI libraries[http:\/\/www-unix.mcs.anl.gov\/mpi\/mpich]"},{"key":"180_CR28","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1146\/annurev.genet.36.043002.091635","volume":"36","author":"DA Brow","year":"2003","unstructured":"Brow DA: Allosteric cascade of spliceosome activation.\n                           Annu Rev Genet 2003, 36: 333\u2013360. 10.1146\/annurev.genet.36.043002.091635","journal-title":"Annu Rev Genet"},{"key":"180_CR29","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1016\/S1360-1385(00)01595-8","volume":"4","author":"ZJ Lorkovic","year":"2000","unstructured":"Lorkovic ZJ, Wieczorek KDA, Lambermon MH, Filipowicz W: Pre-mRNA splicing in higher plants.\n                           Trends Plant Sci 2000, 4: 160\u2013167. 10.1016\/S1360-1385(00)01595-8","journal-title":"Trends Plant Sci"},{"key":"180_CR30","first-page":"4939","volume":"13","author":"CWJ Smith","year":"1993","unstructured":"Smith CWJ, Chu TT, Nadal-Ginard B: Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns.\n                           Mol Cell Biol 1993, 13: 4939\u20134952.","journal-title":"Mol Cell Biol"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-5-64.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T16:03:12Z","timestamp":1726243392000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-5-64"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,5,21]]},"references-count":30,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2004,12]]}},"alternative-id":["180"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-5-64","relation":{},"ISSN":["1471-2105"],"issn-type":[{"type":"electronic","value":"1471-2105"}],"subject":[],"published":{"date-parts":[[2004,5,21]]},"assertion":[{"value":"16 December 2003","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 May 2004","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 May 2004","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"64"}}