{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,1,25]],"date-time":"2024-01-25T11:50:44Z","timestamp":1706183444290},"reference-count":8,"publisher":"Springer Science and Business Media LLC","issue":"S1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2005,5]]},"abstract":"<jats:title>Abstract<\/jats:title>\n          <jats:sec>\n            <jats:title>Background<\/jats:title>\n            <jats:p>The development of text mining systems that annotate biological entities with their properties using scientific literature is an important recent research topic. These systems need first to recognize the biological entities and properties in the text, and then decide which pairs represent valid annotations.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Methods<\/jats:title>\n            <jats:p>This document introduces a novel unsupervised method for recognizing biological properties in unstructured text, involving the evidence content of their names.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Results<\/jats:title>\n            <jats:p>This document shows the results obtained by the application of our method to BioCreative tasks 2.1 and 2.2, where it identified Gene Ontology annotations and their evidence in a set of articles.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Conclusion<\/jats:title>\n            <jats:p>From the performance obtained in BioCreative, we concluded that an automatic annotation system can effectively use our method to identify biological properties in unstructured text.<\/jats:p>\n          <\/jats:sec>","DOI":"10.1186\/1471-2105-6-s1-s21","type":"journal-article","created":{"date-parts":[[2005,5,24]],"date-time":"2005-05-24T18:13:44Z","timestamp":1116958424000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":32,"title":["Finding genomic ontology terms in text using evidence content"],"prefix":"10.1186","volume":"6","author":[{"given":"Francisco M","family":"Couto","sequence":"first","affiliation":[]},{"given":"M\u00e1rio J","family":"Silva","sequence":"additional","affiliation":[]},{"given":"Pedro M","family":"Coutinho","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2005,5,24]]},"reference":[{"key":"656_CR1","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1016\/S0014-5793(00)01661-6","volume":"476","author":"M Andrade","year":"2000","unstructured":"Andrade M, Bork P: Automated extraction of information in molecular biology. FEBS Letters 2000, 476: 12\u201317.","journal-title":"FEBS Letters"},{"issue":"12","key":"656_CR2","doi-asserted-by":"publisher","first-page":"1553","DOI":"10.1093\/bioinformatics\/18.12.1553","volume":"18","author":"L Hirschman","year":"2002","unstructured":"Hirschman L, Park J, Tsujii J, Wong L, Wu C: Accomplishments and challenges in literature data mining for biology. Bioinformatics 2002, 18(12):1553\u20131561.","journal-title":"Bioinformatics"},{"key":"656_CR3","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/bib\/3.2.154","volume":"3","author":"C Blaschke","year":"2002","unstructured":"Blaschke C, Hirschman L, Valencia A: Information Extraction in Molecular Biology. Briefings in Bioinformatics 2002, 3: 1\u201312.","journal-title":"Briefings in Bioinformatics"},{"key":"656_CR4","doi-asserted-by":"publisher","first-page":"262","DOI":"10.1093\/nar\/gkh021","volume":"32","author":"E Camon","year":"2004","unstructured":"Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R: The Gene Ontology Annotations (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Research 2004, 32: 262\u2013166.","journal-title":"Nucleic Acids Research"},{"key":"656_CR5","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1613\/jair.514","volume":"11","author":"P Resnik","year":"1999","unstructured":"Resnik P: Semantic similarity in a taxonomy: an information-based measure and its application to problems of ambiguity in natural language. Artificial Intelligence Research 1999, 11: 95\u2013130.","journal-title":"Artificial Intelligence Research"},{"key":"656_CR6","volume-title":"DI\/FCUL TR 03-29, Department of Informatics, University of Lisbon","author":"F Couto","year":"2003","unstructured":"Couto F, Silva M, Coutinho P: Implementation of a Functional Semantic Similarity Measure between Gene-Products. DI\/FCUL TR 03\u201329, Department of Informatics, University of Lisbon 2003. [http:\/\/www.di.fc.ul.pt\/tech-reports\/03\u201329.pdf]"},{"key":"656_CR7","doi-asserted-by":"publisher","first-page":"331i","DOI":"10.1093\/bioinformatics\/btg1046","volume":"19","author":"A Yeh","year":"2003","unstructured":"Yeh A, Hirschman L, Morgan A: Evaluation of Text Data Mining for Database Curation: Lessons Learned from the KDD Challenge Cup. Bioinformatics 2003, 19: 331i-339i.","journal-title":"Bioinformatics"},{"key":"656_CR8","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1145\/967900.967925","volume-title":"Proceedings of the 2004 ACM symposium on Applied computing, ACM Press","author":"F Couto","year":"2004","unstructured":"Couto F, Martins B, Silva M: Classifying biological articles using web resources. Proceedings of the 2004 ACM symposium on Applied computing, ACM Press 2004, 111\u2013115."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-6-S1-S21.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,8,31]],"date-time":"2021-08-31T23:38:22Z","timestamp":1630453102000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-6-S1-S21"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,5]]},"references-count":8,"journal-issue":{"issue":"S1","published-print":{"date-parts":[[2005,5]]}},"alternative-id":["656"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-6-s1-s21","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2005,5]]},"assertion":[{"value":"24 May 2005","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"S21"}}