{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,20]],"date-time":"2025-10-20T17:25:08Z","timestamp":1760981108115},"reference-count":17,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2006,4,27]],"date-time":"2006-04-27T00:00:00Z","timestamp":1146096000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2006,12]]},"DOI":"10.1186\/1471-2105-7-226","type":"journal-article","created":{"date-parts":[[2006,4,27]],"date-time":"2006-04-27T14:40:53Z","timestamp":1146148853000},"source":"Crossref","is-referenced-by-count":10,"title":["GNU polyxmass: a software framework for mass spectrometric simulations of linear (bio-)polymeric analytes"],"prefix":"10.1186","volume":"7","author":[{"given":"Filippo","family":"Rusconi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2006,4,27]]},"reference":[{"issue":"4","key":"965_CR1","doi-asserted-by":"publisher","first-page":"488","DOI":"10.1016\/S0958-1669(97)80073-0","volume":"8","author":"P Rudd","year":"1997","unstructured":"Rudd P, Dwek R: Rapid, sensitive sequencing of oligosaccharides from glycoproteins. Curr Opin Biotechnol 1997, 8(4):488\u201397. 10.1016\/S0958-1669(97)80073-0","journal-title":"Curr Opin Biotechnol"},{"key":"965_CR2","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/S0958-1669(98)80080-3","volume":"9","author":"P Crain","year":"1998","unstructured":"Crain P, McCloskey J: Applications of mass spectrometry to the characterization of oligonucleotides and nucleic acids. Curr Opin Biotechnol 1998, 9: 25\u201334. 10.1016\/S0958-1669(98)80080-3","journal-title":"Curr Opin Biotechnol"},{"issue":"5","key":"965_CR3","doi-asserted-by":"publisher","first-page":"310","DOI":"10.1002\/mas.10011","volume":"20","author":"C Huber","year":"2001","unstructured":"Huber C, Oberacher H: Analysis of nucleic acids by on-line liquid chromatography-mass spectrometry. Mass Spectrom Rev 2001, 20(5):310\u201343. 10.1002\/mas.10011","journal-title":"Mass Spectrom Rev"},{"issue":"5","key":"965_CR4","doi-asserted-by":"publisher","first-page":"305","DOI":"10.1002\/mas.10036","volume":"21","author":"F Rusconi","year":"2002","unstructured":"Rusconi F, Guillonneau F, Praseuth D: Contributions of mass spectrometry in the study of nucleic acid-binding proteins and of nucleic acid-protein interactions. Mass Spectrom Rev 2002, 21(5):305\u201348. 10.1002\/mas.10036","journal-title":"Mass Spectrom Rev"},{"issue":"3","key":"965_CR5","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1038\/nbt0303-255","volume":"21","author":"M Mann","year":"2003","unstructured":"Mann M, Jensen O: Proteomic analysis of post-translational modifications. Nat Biotechnol 2003, 21(3):255\u201361. 10.1038\/nbt0303-255","journal-title":"Nat Biotechnol"},{"issue":"5","key":"965_CR6","doi-asserted-by":"publisher","first-page":"2104","DOI":"10.1046\/j.1471-4159.1996.67052104.x","volume":"67","author":"V Redeker","year":"1996","unstructured":"Redeker V, Rusconi F, Mary J, Prom\u00e9 D, Rossier J: Structure of the C-terminal tail of alpha-tubulin: increase of heterogeneity from newborn to adult. J Neurochem 1996, 67(5):2104\u201314.","journal-title":"J Neurochem"},{"issue":"36","key":"965_CR7","doi-asserted-by":"publisher","first-page":"11021","DOI":"10.1021\/bi970752e","volume":"36","author":"F Rusconi","year":"1997","unstructured":"Rusconi F, Potier M, Le Caer J, Schmitter JM, Rossier J: Characterization of the chicken telokin heterogeneity by time-of-flight mass spectrometry. Biochemistry 1997, 36(36):11021\u20136. 10.1021\/bi970752e","journal-title":"Biochemistry"},{"key":"965_CR8","unstructured":"ExPASy Proteomics Server[\n                    http:\/\/www.expasy.ch\n                    \n                  ]"},{"key":"965_CR9","unstructured":"Rozenski J: Nucleic acids masspec toolbox (Mongo Oligo Mass Calculator v2.06).[\n                    http:\/\/medlib.med.utah.edu\/masspec\n                    \n                  ]"},{"issue":"4","key":"965_CR10","doi-asserted-by":"publisher","first-page":"644","DOI":"10.1093\/bioinformatics\/18.4.644","volume":"18","author":"F Rusconi","year":"2002","unstructured":"Rusconi F, Belghazi M: Desktop prediction\/analysis of mass spectrometric data in proteomic projects by using massXpert. Bioinformatics 2002, 18(4):644\u20135. 10.1093\/bioinformatics\/18.4.644","journal-title":"Bioinformatics"},{"issue":"11","key":"965_CR11","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1016\/S0968-0004(01)01954-5","volume":"26","author":"S Peri","year":"2001","unstructured":"Peri S, Steen H, Pandey A: GPMAW-a software tool for analyzing proteins and peptides. Trends Biochem Sci 2001, 26(11):687\u20139. 10.1016\/S0968-0004(01)01954-5","journal-title":"Trends Biochem Sci"},{"key":"965_CR12","volume-title":"J Am Soc Mass Spec","author":"J Rozenski","year":"2001","unstructured":"Rozenski J, McCloskey JA: SOS: a simple interactive program for ab initio oligonucleotide sequencing by mass spectrometry. J Am Soc Mass Spec 2001."},{"issue":"11","key":"965_CR13","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1002\/bms.1200111109","volume":"11","author":"P Roepstorff","year":"1984","unstructured":"Roepstorff P, Fohlman J: Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 1984, 11(11):601. 10.1002\/bms.1200111109","journal-title":"Biomed Mass Spectrom"},{"key":"965_CR14","doi-asserted-by":"publisher","first-page":"397","DOI":"10.1007\/BF01049915","volume":"5","author":"B Domon","year":"1988","unstructured":"Domon B, Costello C: A systematic nomenclature for carbohydrate fragmentations in FAB-MS\/MS spectra of glycoconjugates. Glycoconjugate Journal 1988, 5: 397\u2013409. 10.1007\/BF01049915","journal-title":"Glycoconjugate Journal"},{"issue":"11","key":"965_CR15","doi-asserted-by":"publisher","first-page":"1459","DOI":"10.1038\/nbt1031","volume":"22","author":"P Pedrioli","year":"2004","unstructured":"Pedrioli P, Eng J, Hubley R, Vogelzang M, Deutsch E, Raught B, Pratt B, Nilsson E, Angeletti R, Apweiler R, Cheung K, Costello C, Hermjakob H, Huang S, Julian R, Kapp E, McComb M, Oliver S, Omenn G, Paton N, Simpson R, Smith R, Taylor C, Zhu W, Aebersold R: A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol 2004, 22(11):1459\u201366. 10.1038\/nbt1031","journal-title":"Nat Biotechnol"},{"issue":"2","key":"965_CR16","doi-asserted-by":"publisher","first-page":"490","DOI":"10.1002\/pmic.200300694","volume":"4","author":"S Orchard","year":"2004","unstructured":"Orchard S, Hermjakob H, Julian R Jr, Runte K, Sherman D, Wojcik J, Zhu W, Apweiler R: Common interchange standards for proteomics data: Public availability of tools and schema. Proteomics 2004, 4(2):490\u20131. 10.1002\/pmic.200300694","journal-title":"Proteomics"},{"issue":"2","key":"965_CR17","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1002\/pmic.200401158","volume":"5","author":"S Orchard","year":"2005","unstructured":"Orchard S, Hermjakob H, Binz P, Hoogland C, Taylor C, Zhu W, Julian R Jr, Apweiler R: Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25\u201327(th) October, 2004. Proteomics 2005, 5(2):337\u20139. 10.1002\/pmic.200401158","journal-title":"Proteomics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-7-226.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-7-226\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-7-226.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T03:41:27Z","timestamp":1548214887000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-7-226"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,4,27]]},"references-count":17,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2006,12]]}},"alternative-id":["965"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-7-226","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006,4,27]]},"article-number":"226"}}