{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T01:27:54Z","timestamp":1778635674734,"version":"3.51.4"},"reference-count":21,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2006,12,1]],"date-time":"2006-12-01T00:00:00Z","timestamp":1164931200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2006,12]]},"DOI":"10.1186\/1471-2105-7-533","type":"journal-article","created":{"date-parts":[[2006,12,15]],"date-time":"2006-12-15T19:19:01Z","timestamp":1166210341000},"source":"Crossref","is-referenced-by-count":26,"title":["Effect of various normalization methods on Applied Biosystems expression array system data"],"prefix":"10.1186","volume":"7","author":[{"given":"Catalin C","family":"Barbacioru","sequence":"first","affiliation":[]},{"given":"Yulei","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Roger D","family":"Canales","sequence":"additional","affiliation":[]},{"given":"Yongming A","family":"Sun","sequence":"additional","affiliation":[]},{"given":"David N","family":"Keys","sequence":"additional","affiliation":[]},{"given":"Frances","family":"Chan","sequence":"additional","affiliation":[]},{"given":"Karen A","family":"Poulter","sequence":"additional","affiliation":[]},{"given":"Raymond R","family":"Samaha","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2006,12,15]]},"reference":[{"key":"1272_CR1","doi-asserted-by":"publisher","first-page":"742","DOI":"10.1038\/nbt0703-742","volume":"21","author":"JL Hackett","year":"2003","unstructured":"Hackett JL, Lesko LJ: Microarray data \u2013 the US FDA, industry and academia. Nat Biotechnol 2003, 21: 742\u2013743. 10.1038\/nbt0703-742","journal-title":"Nat Biotechnol"},{"issue":"Suppl","key":"1272_CR2","doi-asserted-by":"publisher","first-page":"474","DOI":"10.1038\/ng1029","volume":"32","author":"EF Petricoin 3rd","year":"2002","unstructured":"Petricoin EF 3rd, Hackett JL, Lesko LJ, Puri RK, Gutman SI, Chumakov K, Woodcock J, Feigal DW Jr, Zoon KC, Sistare FD: Medical applications of microarray technologies: a regulatory science perspective. Nat Genet 2002, 32(Suppl):474\u2013479. 10.1038\/ng1029","journal-title":"Nat Genet"},{"key":"1272_CR3","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1093\/bioinformatics\/19.2.185","volume":"19","author":"BM Bolstad","year":"2003","unstructured":"Bolstad BM, Irizarry RA, Astrand M, Speed TP: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19: 185\u2013193. 10.1093\/bioinformatics\/19.2.185","journal-title":"Bioinformatics"},{"key":"1272_CR4","series-title":"In Science and Statistics: A Festschrift for Terry Speed, IMS Lecture Notes-Monograph Series Edited by: Goldstein DR.","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1214\/lnms\/1215091155","volume-title":"In Science and Statistics: A Festschrift for Terry Speed, IMS Lecture Notes-Monograph Series","author":"YH Yang","year":"2003","unstructured":"Yang YH, Thorne NP: Normalization for two-color cDNA microarray data. In Science and Statistics: A Festschrift for Terry Speed, IMS Lecture Notes-Monograph Series Edited by: Goldstein DR. 2003, 40: 403\u2013418."},{"key":"1272_CR5","doi-asserted-by":"publisher","first-page":"132","DOI":"10.1117\/12.427981","volume-title":"In Microarrays: Optical Technologies and Informatics, Proceedings of SPIE","author":"A Hartemink","year":"2001","unstructured":"Hartemink A, Gifford D, Jaakkola T, Young R: Maximum Likelihood Estimation of Optimal Scaling Factors for Expression Array Normalization. In Microarrays: Optical Technologies and Informatics, Proceedings of SPIE Edited by: Bittner M, Chen Y, Dorsel A, Dougherty E. 2001, 4266: 132\u2013140."},{"issue":"4","key":"1272_CR6","doi-asserted-by":"publisher","first-page":"e15","DOI":"10.1093\/nar\/30.4.e15","volume":"30","author":"YH Yang","year":"2002","unstructured":"Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research 2002, 30(4):e15. 10.1093\/nar\/30.4.e15","journal-title":"Nucleic Acids Research"},{"key":"1272_CR7","first-page":"265","volume-title":"In METHODS: Selecting Candidate Genes from DNA Array Screens: Application to Neuroscience","author":"GK Smyth","year":"2003","unstructured":"Smyth GK, Speed TP: Normalization of cDNA microarray data. In METHODS: Selecting Candidate Genes from DNA Array Screens: Application to Neuroscience Edited by: Carter D. 2003, 31(4):265\u2013273."},{"issue":"Suppl 1","key":"1272_CR8","doi-asserted-by":"publisher","first-page":"S96","DOI":"10.1093\/bioinformatics\/18.suppl_1.S96","volume":"18","author":"W Huber","year":"2002","unstructured":"Huber W, Heydebreck A, Sueltmann H, Poustka A, Vingron M: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002, 18(Suppl 1):S96-S104.","journal-title":"Bioinformatics"},{"key":"1272_CR9","doi-asserted-by":"crossref","unstructured":"MAQC Consortium: The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 2006, 24(9):1151\u201361. 10.1038\/nbt1239","DOI":"10.1038\/nbt1239"},{"key":"1272_CR10","unstructured":"Applied Biosystems Expression Array System: System profile[ http:\/\/docs.appliedbiosystems.com\/pebiodocs\/00113259.pdf ]"},{"key":"1272_CR11","doi-asserted-by":"publisher","first-page":"986","DOI":"10.1101\/gr.6.10.986","volume":"6","author":"CA Heid","year":"1996","unstructured":"Heid CA, Stevens J, Livak KJ, Williams PM: Real time quantitative PCR. Genome Res 1996, 6: 986\u2013994.","journal-title":"Genome Res"},{"key":"1272_CR12","doi-asserted-by":"publisher","first-page":"995","DOI":"10.1101\/gr.6.10.995","volume":"6","author":"UE Gibson","year":"1996","unstructured":"Gibson UE, Heid CA, Williams PM: A novel method for real time quantitative RT-PCR. Genome Res 1996, 6: 995\u20131001.","journal-title":"Genome Res"},{"issue":"403","key":"1272_CR13","doi-asserted-by":"publisher","first-page":"596","DOI":"10.1080\/01621459.1988.10478639","volume":"83","author":"WS Cleveland","year":"1988","unstructured":"Cleveland WS, Devlin SJ: Locally-weighted regression: an approach to regression analysis by local fitting. J Am Stat Assoc 1988, 83(403):596\u2013610. 10.2307\/2289282","journal-title":"J Am Stat Assoc"},{"issue":"1","key":"1272_CR14","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y: Controlling the false discovery rate \u2013 a practical and powerful approach to multiple testing. J R Stat Soc B Met 1995, 57(1):289\u2013300.","journal-title":"J R Stat Soc B Met"},{"key":"1272_CR15","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"V Tusher","year":"2001","unstructured":"Tusher V, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. PNAS 2001, 98: 5116\u20135121. 10.1073\/pnas.091062498","journal-title":"PNAS"},{"key":"1272_CR16","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1186\/1471-2164-7-59","volume":"7","author":"Y Wang","year":"2006","unstructured":"Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR: Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics 2006, 7: 59. 10.1186\/1471-2164-7-59","journal-title":"BMC Genomics"},{"issue":"9","key":"1272_CR17","doi-asserted-by":"publisher","first-page":"1115","DOI":"10.1038\/nbt1236","volume":"24","author":"R Canales","year":"2006","unstructured":"Canales R, Luo Y, Willey J, Austermiller B, Barbacioru C, Boysen C, Hunkapiller K, Jensen R, Knight C, Lee K, Ma Y, Maqsodi B, Papallo A, Herness-Peters E, Poulter K, Ruppel P, Samaha RR, Shi L, Yang W, Zhang L, Goodsaid F: Evaluation of DNA Microarray Results with Alternative Quantitative Technology Platforms. Nat Biotechnol 2006, 24(9):1115\u201322. 10.1038\/nbt1236","journal-title":"Nat Biotechnol"},{"issue":"9","key":"1272_CR18","doi-asserted-by":"publisher","first-page":"1162","DOI":"10.1038\/nbt1238","volume":"24","author":"L Guo","year":"2006","unstructured":"Guo L, Lobenhofer E, Wang C, Shippy R, Harris S, Zhang L, Mei N, Chen T, Herman D, Goodsaid F, Hurban P, Phillips K, Xu J, Deng X, Sun Y, Tong W, Dragan Y, Shi L: Rat toxicogenomic study reveal analytical consistency across microarray platforms. Nat Biotecnol 2006, 24(9):1162\u201369. 10.1038\/nbt1238","journal-title":"Nat Biotecnol"},{"issue":"9","key":"1272_CR19","doi-asserted-by":"publisher","first-page":"1140","DOI":"10.1038\/nbt1242","volume":"24","author":"T Patterson","year":"2006","unstructured":"Patterson T, Lobenhofer E, Fulmer-Smentek S, Collins P, Chu T, Bao W, Fang H, Kawasaki E, Hager J, Tikhonova I, Walker S, Zhang L, Hurban P, de Longueville F, Fuscoe J, Tong W, Shi L, Wolfinger R: Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project. Nat Biotecnol 2006, 24(9):1140\u201350. 10.1038\/nbt1242","journal-title":"Nat Biotecnol"},{"issue":"1","key":"1272_CR20","first-page":"111","volume":"12","author":"S Dudoit","year":"2002","unstructured":"Dudoit S, Yang YH, Callow MJ, Speed TP: Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments. Stat Sin 2002, 12(1):111\u2013139.","journal-title":"Stat Sin"},{"key":"1272_CR21","unstructured":"Bioconductor[ http:\/\/www.bioconductor.org ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-7-533.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-7-533\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-7-533.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,12]],"date-time":"2025-01-12T10:50:43Z","timestamp":1736679043000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-7-533"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,12]]},"references-count":21,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2006,12]]}},"alternative-id":["1272"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-7-533","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006,12]]},"article-number":"533"}}