{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,12]],"date-time":"2026-02-12T08:34:48Z","timestamp":1770885288656,"version":"3.50.1"},"reference-count":15,"publisher":"Springer Science and Business Media LLC","issue":"S4","license":[{"start":{"date-parts":[[2006,12,1]],"date-time":"2006-12-01T00:00:00Z","timestamp":1164931200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2006,12]]},"DOI":"10.1186\/1471-2105-7-s4-s24","type":"journal-article","created":{"date-parts":[[2006,12,12]],"date-time":"2006-12-12T19:59:06Z","timestamp":1165953546000},"source":"Crossref","is-referenced-by-count":13,"title":["A novel approach to phylogenetic tree construction using stochastic optimization and clustering"],"prefix":"10.1186","volume":"7","author":[{"given":"Ling","family":"Qin","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yixin","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yi","family":"Pan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ling","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2006,12,12]]},"reference":[{"key":"1347_CR1","doi-asserted-by":"crossref","first-page":"3353","DOI":"10.1242\/jcs.113.19.3353","volume":"113","author":"T Hodge","year":"2000","unstructured":"Hodge T, Cope MJTV: A Myosin Family Tree. Journal of Cell Science 2000, 113: 3353\u20133354.","journal-title":"Journal of Cell Science"},{"key":"1347_CR2","first-page":"406","volume":"4","author":"N Saitou","year":"1987","unstructured":"Saitou N, Nei M: The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4: 406\u2013425.","journal-title":"Mol Biol Evol"},{"key":"1347_CR3","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1016\/S0303-2647(98)00033-1","volume":"49","author":"TH Reijmers","year":"1999","unstructured":"Reijmers TH, Wehrens R, Daeyaert FD, Lewi PJ, et al.: Using genetic algorithms for the construction of phylogenetic trees: application to G-protein coupled receptor sequences. Biosystems 1999, 49: 31\u201343.","journal-title":"Biosystems"},{"key":"1347_CR4","first-page":"375","volume-title":"Proceedings of the 2003 IEEE Bioinformatics Conference","author":"B Hao","year":"2003","unstructured":"Hao B, Qi J: Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance. Proceedings of the 2003 IEEE Bioinformatics Conference 2003, 375\u2013385."},{"issue":"3","key":"1347_CR5","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1504\/IJBRA.2006.010602","volume":"2","author":"W Xiaomeng","year":"2006","unstructured":"Xiaomeng W, Xiufeng W, Gang W, Dong X, Guohui L: Phylogenetic Analysis Using Complete Signature Information of Whole Genomes and Clustered Neighbor-Joining Method. International Journal on Bioinformatics Research and Applications 2006, 2(3):219\u2013248.","journal-title":"International Journal on Bioinformatics Research and Applications"},{"key":"1347_CR6","first-page":"53","volume-title":"Posters in 2005 IEEE Computational Systems Bioinformatics Conference (CSB2005)","author":"X Wu","year":"2005","unstructured":"Wu X, Wan XF, Xu D, Lin GH: Whole genome phylogeny based on clustered signature string composition. Posters in 2005 IEEE Computational Systems Bioinformatics Conference (CSB2005) 2005, 53\u201354."},{"key":"1347_CR7","first-page":"107","volume-title":"proceedings of the sixth annual international computing and combinatorics conference (RECOMB)","author":"X Chen","year":"2000","unstructured":"Chen X, Wong SK, Li M: A compression algorithm for DNA sequences and its applications in genome comparison. In proceedings of the sixth annual international computing and combinatorics conference (RECOMB). ACM press; 2000:107\u2013117."},{"key":"1347_CR8","first-page":"866","volume":"30","author":"S Grumbach","year":"1994","unstructured":"Grumbach S, Tahi F: A new challenge for compression algorithms: genetic sequences. Journal of Information Processing Management 1994, 30: 866\u2013875.","journal-title":"Journal of Information Processing Management"},{"key":"1347_CR9","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1016\/S0378-4371(00)00102-3","volume":"A282","author":"B Hao","year":"2000","unstructured":"Hao B: Fractals from genomes-exact solutions of a biology inspired problem. Physica 2000, A282: 225\u2013246.","journal-title":"Physica"},{"key":"1347_CR10","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1109\/3477.484436","volume":"26","author":"M Dorigo","year":"1996","unstructured":"Dorigo M, Maniezzo V, Colomi A: Ant system: Optimization by a colony of cooperating agents. IEEE Transactions on Systems, Man, and Cybernetics-Part B 1996, 26: 29\u201341.","journal-title":"IEEE Transactions on Systems, Man, and Cybernetics-Part B"},{"key":"1347_CR11","first-page":"1148","volume":"14","author":"C Ling","year":"2003","unstructured":"Ling C, Jie S, Ling Q: An Adaptive Ant Colony Algorithm Based on Equilibrium of Distribution. Journal of Software 2003, 14: 1148\u20131151.","journal-title":"Journal of Software"},{"key":"1347_CR12","doi-asserted-by":"publisher","first-page":"554","DOI":"10.1093\/oxfordjournals.molbev.a004111","volume":"19","author":"G Stuart","year":"2002","unstructured":"Stuart G, Moffett K, Bozarth RF: A comprehensive vertebrate phylogeny using vector representation of protein sequences from whole genomes. Molecular Biology and Evolution 2002, 19: 554\u2013562.","journal-title":"Molecular Biology and Evolution"},{"key":"1347_CR13","first-page":"1451","volume-title":"Proceedings of the 1999 Congress or Evolutionary Computation","author":"P Kuntz","year":"1999","unstructured":"Kuntz P, Snyder D: New results on ant-based heuristic for highlighting the organization of large graphs. In Proceedings of the 1999 Congress or Evolutionary Computation. IEEE Press, Piscataway, NJ; 1999:1451\u20131458."},{"key":"1347_CR14","doi-asserted-by":"publisher","first-page":"8117","DOI":"10.1128\/JVI.75.17.8117-8126.2001","volume":"75","author":"E Herniou","year":"2001","unstructured":"Herniou E, et al.: Use of Whole genome sequence data to infer baculovirus phylogency. Journal of virology 2001, 75: 8117\u20138126.","journal-title":"Journal of virology"},{"key":"1347_CR15","doi-asserted-by":"publisher","first-page":"875","DOI":"10.1016\/0306-4573(94)90014-0","volume":"30","author":"S Grumbach","year":"1994","unstructured":"Grumbach S, Tahi F: A new challenge for compression algorithms: genetic sequences. Journal of Information Processing Management 1994, 30: 875\u2013866.","journal-title":"Journal of Information Processing Management"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-7-S4-S24.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-7-S4-S24\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-7-S4-S24.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,8,5]],"date-time":"2021-08-05T21:30:35Z","timestamp":1628199035000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-7-S4-S24"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,12]]},"references-count":15,"journal-issue":{"issue":"S4","published-print":{"date-parts":[[2006,12]]}},"alternative-id":["1347"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-7-s4-s24","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006,12]]},"article-number":"S24"}}