{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,4,5]],"date-time":"2022-04-05T22:07:26Z","timestamp":1649196446972},"reference-count":29,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2007,11,19]],"date-time":"2007-11-19T00:00:00Z","timestamp":1195430400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2007,12]]},"DOI":"10.1186\/1471-2105-8-455","type":"journal-article","created":{"date-parts":[[2007,11,20]],"date-time":"2007-11-20T02:11:08Z","timestamp":1195524668000},"source":"Crossref","is-referenced-by-count":4,"title":["Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA \u2013 a Bayesian approach"],"prefix":"10.1186","volume":"8","author":[{"given":"Carmen","family":"Pin","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark","family":"Reuter","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2007,11,19]]},"reference":[{"issue":"5338","key":"1827_CR1","doi-asserted-by":"publisher","first-page":"680","DOI":"10.1126\/science.278.5338.680","volume":"278","author":"JL DeRisi","year":"1997","unstructured":"DeRisi JL, Iyer VR, Brown PO: Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 1997, 278 (5338): 680-686. 10.1126\/science.278.5338.680.","journal-title":"Science"},{"issue":"6","key":"1827_CR2","doi-asserted-by":"publisher","first-page":"625","DOI":"10.1089\/106652701753307520","volume":"8","author":"RD Wolfinger","year":"2001","unstructured":"Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS: Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol. 2001, 8 (6): 625-637. 10.1089\/106652701753307520.","journal-title":"J Comput Biol"},{"issue":"6","key":"1827_CR3","doi-asserted-by":"publisher","first-page":"819","DOI":"10.1089\/10665270050514954","volume":"7","author":"MK Kerr","year":"2000","unstructured":"Kerr MK, Martin M, Churchill GA: Analysis of variance for gene expression microarray data. J Comput Biol. 2000, 7 (6): 819-837. 10.1089\/10665270050514954.","journal-title":"J Comput Biol"},{"issue":"6","key":"1827_CR4","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1093\/bioinformatics\/17.6.509","volume":"17","author":"P Baldi","year":"2001","unstructured":"Baldi P, Long AD: A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes. Bioinformatics. 2001, 17 (6): 509-519. 10.1093\/bioinformatics\/17.6.509.","journal-title":"Bioinformatics"},{"key":"1827_CR5","first-page":"31","volume-title":"Statistica Sinica","author":"I Lonnstedt","year":"2002","unstructured":"Lonnstedt I, Speed TP: Replicated microarray data. Statistica Sinica. 2002, 31-46."},{"issue":"4","key":"1827_CR6","doi-asserted-by":"publisher","first-page":"597","DOI":"10.1093\/biostatistics\/4.4.597","volume":"4","author":"R Gottardo","year":"2003","unstructured":"Gottardo R, Pannucci JA, Kuske CR, Brettin T: Statistical analysis of microarray data: a Bayesian approach. Biostatistics. 2003, 4 (4): 597-620. 10.1093\/biostatistics\/4.4.597.","journal-title":"Biostatistics"},{"issue":"1","key":"1827_CR7","doi-asserted-by":"crossref","first-page":"Article3","DOI":"10.2202\/1544-6115.1027","volume":"3","author":"GK Smyth","year":"2004","unstructured":"Smyth GK: Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 2004, 3 (1): Article3-","journal-title":"Stat Appl Genet Mol Biol"},{"key":"1827_CR8","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1186\/1471-2105-7-19","volume":"7","author":"MN Price","year":"2006","unstructured":"Price MN, Arkin AP, Alm EJ: OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments. BMC Bioinformatics. 2006, 7: 19-10.1186\/1471-2105-7-19.","journal-title":"BMC Bioinformatics"},{"key":"1827_CR9","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1186\/1471-2105-7-126","volume":"7","author":"RJ Fox","year":"2006","unstructured":"Fox RJ, Dimmic MW: A two-sample Bayesian t-test for microarray data. BMC Bioinformatics. 2006, 7: 126-10.1186\/1471-2105-7-126.","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"1827_CR10","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1089\/106652701300099074","volume":"8","author":"MA Newton","year":"2001","unstructured":"Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW: On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J Comput Biol. 2001, 8 (1): 37-52. 10.1089\/106652701300099074.","journal-title":"J Comput Biol"},{"issue":"12","key":"1827_CR11","doi-asserted-by":"publisher","first-page":"RESEARCH0071","DOI":"10.1186\/gb-2002-3-12-research0071","volume":"3","author":"JP Townsend","year":"2002","unstructured":"Townsend JP, Hartl DL: Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biol. 2002, 3 (12): RESEARCH0071-10.1186\/gb-2002-3-12-research0071.","journal-title":"Genome Biol"},{"key":"1827_CR12","volume-title":"SPIE BIOS 2001","author":"P Luu","year":"2001","unstructured":"Luu P, Yang YH, Dudoit S, Speed TP: Normalization od cDNA microarray data. SPIE BIOS 2001. 2001"},{"key":"1827_CR13","doi-asserted-by":"publisher","first-page":"829","DOI":"10.1080\/01621459.1979.10481038","volume":"74","author":"W Cleveland","year":"1979","unstructured":"Cleveland W: Robust locally weighted regression and smoothing scatterplots. Journal of the American Statistical Association. 1979, 74: 829-836. 10.2307\/2286407.","journal-title":"Journal of the American Statistical Association"},{"key":"1827_CR14","unstructured":"ArrayLeaRNA [www.ifr.ac.uk\/safety\/ArrayLeaRNA]."},{"issue":"15","key":"1827_CR15","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1175\/1520-0450(1976)015<0181:SIPFTP>2.0.CO;2","volume":"15","author":"PW Mielke","year":"1976","unstructured":"Mielke PW: Simple iterative procedures for two-parameter gamma distribution maximum likelihood estimates. Journal of Applied Meteorology. 1976, 15 (15): 181-182. 10.1175\/1520-0450(1976)015<0181:SIPFTP>2.0.CO;2.","journal-title":"Journal of Applied Meteorology"},{"key":"1827_CR16","volume-title":"SIAM Journal on Numerical Analysis series B, volume 1","author":"C Lanczos","year":"1964","unstructured":"Lanczos C: A precision approximation of the gamma function. SIAM Journal on Numerical Analysis series B, volume 1. 1964"},{"key":"1827_CR17","volume-title":"Handbook of Mathematical functions","author":"M Abramowitz","year":"1972","unstructured":"Abramowitz M, Stegun IA: Handbook of Mathematical functions. 1972, New York , Dover Publications"},{"key":"1827_CR18","unstructured":"Microbesonline [www.microbesonline.org]."},{"issue":"7","key":"1827_CR19","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.1101\/gr.3844805","volume":"15","author":"EJ Alm","year":"2005","unstructured":"Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP: The MicrobesOnline Web site for comparative genomics. Genome Res. 2005, 15 (7): 1015-1022. 10.1101\/gr.3844805.","journal-title":"Genome Res"},{"issue":"3","key":"1827_CR20","doi-asserted-by":"publisher","first-page":"880","DOI":"10.1093\/nar\/gki232","volume":"33","author":"MN Price","year":"2005","unstructured":"Price MN, Huang KH, Alm EJ, Arkin AP: A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Res. 2005, 33 (3): 880-892. 10.1093\/nar\/gki232.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"1827_CR21","doi-asserted-by":"publisher","first-page":"852","DOI":"10.1007\/s00253-006-0536-x","volume":"72","author":"C Pin","year":"2006","unstructured":"Pin C, Reuter M, Pearson B, Friis L, Overweg K, Baranyi J, Wells J: Comparison of different approaches for comparative genetic analysis using microarray hybridization. Appl Microbiol Biotechnol. 2006, 72 (4): 852-859. 10.1007\/s00253-006-0536-x.","journal-title":"Appl Microbiol Biotechnol"},{"key":"1827_CR22","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1186\/1471-2105-5-54","volume":"5","author":"JP Townsend","year":"2004","unstructured":"Townsend JP: Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. BMC Bioinformatics. 2004, 5: 54-10.1186\/1471-2105-5-54.","journal-title":"BMC Bioinformatics"},{"key":"1827_CR23","unstructured":"Stanford University [http:\/\/cmgm.stanford.edu\/pbrown\/mguide\/index.htm]."},{"key":"1827_CR24","doi-asserted-by":"publisher","first-page":"1071","DOI":"10.1111\/j.1365-2958.2003.03892.x","volume":"51","author":"A Dagkessamanskaia","year":"2004","unstructured":"Dagkessamanskaia A, Moscoso M, Henard V, Guiral S, Overweg K, Reuter M, Martin B, Wells JM, Claverys JP: Interconnection of competence, stress and CiaR regulons in Streptococcus pneumoniae: competence triggers stationary phase autolysis of ciaR mutant cells. Mol Microbiol. 2004, 51: 1071-1086. 10.1111\/j.1365-2958.2003.03892.x.","journal-title":"Mol Microbiol"},{"issue":"8","key":"1827_CR25","doi-asserted-by":"publisher","first-page":"4674","DOI":"10.1128\/IAI.71.8.4674-4683.2003","volume":"71","author":"MF Anjum","year":"2003","unstructured":"Anjum MF, Lucchini S, Thompson A, Hinton JC, Woodward MJ: Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens. Infect Immun. 2003, 71 (8): 4674-4683. 10.1128\/IAI.71.8.4674-4683.2003.","journal-title":"Infect Immun"},{"issue":"7","key":"1827_CR26","doi-asserted-by":"publisher","first-page":"2357","DOI":"10.1128\/JB.187.7.2357-2367.2005","volume":"187","author":"ML Mohedano","year":"2005","unstructured":"Mohedano ML, Overweg K, de la Fuente A, Reuter M, Altabe S, Mulholland F, de Mendoza D, Lopez P, Wells JM: Evidence that the essential response regulator YycF in Streptococcus pneumoniae modulates expression of fatty acid biosynthesis genes and alters membrane composition. J Bacteriol. 2005, 187 (7): 2357-2367. 10.1128\/JB.187.7.2357-2367.2005.","journal-title":"J Bacteriol"},{"issue":"1","key":"1827_CR27","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1046\/j.1365-2958.2003.03313.x","volume":"47","author":"S Eriksson","year":"2003","unstructured":"Eriksson S, Lucchini S, Thompson A, Rhen M, Hinton JC: Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica. Mol Microbiol. 2003, 47 (1): 103-118. 10.1046\/j.1365-2958.2003.03313.x.","journal-title":"Mol Microbiol"},{"issue":"Pt 1","key":"1827_CR28","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1099\/mic.0.27412-0","volume":"151","author":"K Holmes","year":"2005","unstructured":"Holmes K, Mulholland F, Pearson BM, Pin C, McNicholl-Kennedy J, Ketley JM, Wells JM: Campylobacter jejuni gene expression in response to iron limitation and the role of Fur. Microbiology. 2005, 151 (Pt 1): 243-257. 10.1099\/mic.0.27412-0.","journal-title":"Microbiology"},{"key":"1827_CR29","unstructured":"Agilent Technologies. [\n                    http:\/\/www.agilent.com\/chem\/labonachip\n                    \n                  ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-455.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-8-455\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-455.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T05:15:24Z","timestamp":1548220524000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-8-455"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,11,19]]},"references-count":29,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2007,12]]}},"alternative-id":["1827"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-8-455","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,11,19]]},"article-number":"455"}}