{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T02:21:15Z","timestamp":1787019675066,"version":"3.56.0"},"reference-count":25,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2007,3,5]],"date-time":"2007-03-05T00:00:00Z","timestamp":1173052800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2007,12]]},"DOI":"10.1186\/1471-2105-8-74","type":"journal-article","created":{"date-parts":[[2007,3,6]],"date-time":"2007-03-06T02:03:11Z","timestamp":1173146591000},"source":"Crossref","is-referenced-by-count":26,"title":["Gene selection with multiple ordering criteria"],"prefix":"10.1186","volume":"8","author":[{"given":"James J","family":"Chen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chen-An","family":"Tsai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"ShengLi","family":"Tzeng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chun-Houh","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2007,3,5]]},"reference":[{"key":"1446_CR1","first-page":"51","volume":"13","author":"H Liu","year":"2002","unstructured":"Liu H, Li J, Wong L: A Comparative Study on Feature Selection and Classification Methods Using Gene Expression Profiles and Proteomic Patterns. Genome Informatics 2002, 13: 51\u201360.","journal-title":"Genome Informatics"},{"key":"1446_CR2","volume-title":"Classification and Regression Trees","author":"L Breiman","year":"1984","unstructured":"Breiman L, Friedman JH, Olshen RA, Stone CJ: Classification and Regression Trees. New York: Chapman & Hall; 1984."},{"key":"1446_CR3","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1023\/A:1012487302797","volume":"46","author":"I Guyon","year":"2002","unstructured":"Guyon I, Weston J, Barnhill S, Vapnik V: Gene selection for cancer classification using support vector machines. Machine Learning 2002, 46: 389\u2013422. 10.1023\/A:1012487302797","journal-title":"Machine Learning"},{"key":"1446_CR4","doi-asserted-by":"publisher","first-page":"1131","DOI":"10.1093\/bioinformatics\/17.12.1131","volume":"17","author":"L Li","year":"2001","unstructured":"Li L, Weinberg C, Darden T, Pedersen L: Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA\/KNN method. Bioinformatics 2001, 17: 1131\u20131142. 10.1093\/bioinformatics\/17.12.1131","journal-title":"Bioinformatics"},{"key":"1446_CR5","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1016\/j.febslet.2004.05.087","volume":"571","author":"JH Cho","year":"2004","unstructured":"Cho JH, Lee D, Park JH, Lee IB: Gene selection and classification from microarray data using kernel machine. FEBS Letters 2004, 571: 93\u201398. 10.1016\/j.febslet.2004.05.087","journal-title":"FEBS Letters"},{"key":"1446_CR6","doi-asserted-by":"publisher","first-page":"607","DOI":"10.1089\/dna.2004.23.607","volume":"23","author":"CA Tsai","year":"2004","unstructured":"Tsai CA, Chen CH, Lee TC, Ho IC, Yang UC, Chen JJ: Gene selection for sample classifications in microarray experiments. DNA and Cell Biology 2004, 23: 607\u2013614. 10.1089\/dna.2004.23.607","journal-title":"DNA and Cell Biology"},{"key":"1446_CR7","doi-asserted-by":"publisher","first-page":"6745","DOI":"10.1073\/pnas.96.12.6745","volume":"96","author":"U Alon","year":"1999","unstructured":"Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ: Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proceedings of National Academy of Sciences 1999, 96: 6745\u20136750. 10.1073\/pnas.96.12.6745","journal-title":"Proceedings of National Academy of Sciences"},{"key":"1446_CR8","doi-asserted-by":"publisher","first-page":"6562","DOI":"10.1073\/pnas.102102699","volume":"99","author":"C Ambroise","year":"2002","unstructured":"Ambroise C, McLachlan GJ: Selection Bias in Gene Extraction on the Basis of Microarray Gene-Expression Data. Proceedings of National Academy of Science 2002, 99: 6562\u20136566. 10.1073\/pnas.102102699","journal-title":"Proceedings of National Academy of Science"},{"key":"1446_CR9","doi-asserted-by":"publisher","first-page":"3583","DOI":"10.1093\/bioinformatics\/bth447","volume":"20","author":"M Dettling","year":"2004","unstructured":"Dettling M: BagBoosting for tumor classification with gene expression data. Bioinformatics 2004, 20: 3583\u20133593. 10.1093\/bioinformatics\/bth447","journal-title":"Bioinformatics"},{"key":"1446_CR10","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1038\/ng766","volume":"29","author":"W Jin","year":"2001","unstructured":"Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G: The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet 2001, 29: 389\u2013395. 10.1038\/ng766","journal-title":"Nat Genet"},{"key":"1446_CR11","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B 1995, 57: 289\u2013300.","journal-title":"Journal of the Royal Statistical Society B"},{"key":"1446_CR12","doi-asserted-by":"publisher","first-page":"3097","DOI":"10.1093\/bioinformatics\/bti456","volume":"21","author":"SH Jung","year":"2005","unstructured":"Jung SH: Sample size for FDR-control in microarray data analysis. Bioinformatics 2005, 21: 3097\u20133104. 10.1093\/bioinformatics\/bti456","journal-title":"Bioinformatics"},{"key":"1446_CR13","doi-asserted-by":"publisher","first-page":"188","DOI":"10.1002\/em.20091","volume":"45","author":"GS Akerman","year":"2005","unstructured":"Akerman GS, Rosenzweig BA, Domon OE, Tsai CA, McGarrity LJ, Bishop M, MacGregor JT, Sistare FD, Chen JJ, Morris SM: Alterations in the gene expression profiles and the DNA damage response in ionizing radiation-exposed TK6 cells. Environmental and Molecular Mutagenesis 2005, 45: 188\u2013205. 10.1002\/em.20091","journal-title":"Environmental and Molecular Mutagenesis"},{"key":"1446_CR14","doi-asserted-by":"publisher","first-page":"480","DOI":"10.1289\/ehp.6694","volume":"112","author":"BA Rosenzweig","year":"2004","unstructured":"Rosenzweig BA, Pine PS, Domon OE, Morris SM, Chen JJ, Sistare FD: Dye-bias correction in dual-labeled cDNA microarray gene expression measurements. Environmental Health Perspectives 2004, 112: 480\u2013487.","journal-title":"Environmental Health Perspectives"},{"key":"1446_CR15","unstructured":"The dilution data set[ http:\/\/www.genelogic.com ]"},{"key":"1446_CR16","doi-asserted-by":"publisher","first-page":"R16","DOI":"10.1186\/gb-2005-6-2-r16","volume":"6","author":"SE Choe","year":"2005","unstructured":"Choe SE, Boutros M, Michelson AM, Church GM, Halfon MS: Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biology 2005, 6: R16. 10.1186\/gb-2005-6-2-r16","journal-title":"Genome Biology"},{"issue":"9","key":"1446_CR17","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"V Tusher","year":"2001","unstructured":"Tusher V, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences 2001, 98(9):5116\u20135121. 10.1073\/pnas.091062498","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"1446_CR18","doi-asserted-by":"publisher","first-page":"1151","DOI":"10.1038\/nbt1239","volume":"24","author":"MAQC Consortium","year":"2006","unstructured":"MAQC Consortium: The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature Biotechnology 2006, 24: 1151\u20131169. 10.1038\/nbt1239","journal-title":"Nature Biotechnology"},{"key":"1446_CR19","first-page":"68","volume":"20","author":"JM Perket","year":"2006","unstructured":"Perket JM: Six things you won't find in the MAQC. The Scientist 2006, 20: 68\u201372.","journal-title":"The Scientist"},{"key":"1446_CR20","doi-asserted-by":"publisher","first-page":"488","DOI":"10.1016\/S0140-6736(05)17866-0","volume":"365","author":"S Michiels","year":"2005","unstructured":"Michiels S, Koscielny S, Hill C: Prediction of cancer outcome with microarrays: A multiple random validation strategy. Lancet 2005, 365: 488\u2013492. 10.1016\/S0140-6736(05)17866-0","journal-title":"Lancet"},{"issue":"1","key":"1446_CR21","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1023\/A:1010933404324","volume":"45","author":"L Breiman","year":"2001","unstructured":"Breiman L: Random Forests. Machine Learning 2001, 45(1):5\u201332. 10.1023\/A:1010933404324","journal-title":"Machine Learning"},{"key":"1446_CR22","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1137\/1111020","volume":"11","author":"O Barndorff-Nielsen","year":"1966","unstructured":"Barndorff-Nielsen O, Sobel M: On the distribution of the number of admissible points in a vector random sample. Theory of Probability and its Applications 1966, 11: 249\u2013269. 10.1137\/1111020","journal-title":"Theory of Probability and its Applications"},{"key":"1446_CR23","volume-title":"European Signal Processing Confersence (EUSIPSO), Toulouse, France","author":"G Fleury","year":"2002","unstructured":"Fleury G, Hero AO, Yoshida S, Carter T, Barlow C, Swaroop A: Pareto analysis for gene filtering in microarray experiments. European Signal Processing Confersence (EUSIPSO), Toulouse, France 2002."},{"key":"1446_CR24","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-662-04245-8","volume-title":"Computational Geometry: Algorithms and Applications","author":"M de Berg","year":"2000","unstructured":"de Berg M, van Kreveld M, Overmars M, Schwarzkopf O: Computational Geometry: Algorithms and Applications. Berlin: Springer-Verlag; 2000."},{"key":"1446_CR25","unstructured":"The Geometry Center, Minneapolis MN[ http:\/\/www.qhull.org ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-74.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-8-74\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-74.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,14]],"date-time":"2025-01-14T11:46:48Z","timestamp":1736855208000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-8-74"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,3,5]]},"references-count":25,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2007,12]]}},"alternative-id":["1446"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-8-74","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,3,5]]},"article-number":"74"}}