{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,19]],"date-time":"2024-06-19T01:32:14Z","timestamp":1718760734536},"reference-count":20,"publisher":"Springer Science and Business Media LLC","issue":"S2","license":[{"start":{"date-parts":[[2007,5,1]],"date-time":"2007-05-01T00:00:00Z","timestamp":1177977600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2007,5]]},"DOI":"10.1186\/1471-2105-8-s2-s10","type":"journal-article","created":{"date-parts":[[2007,5,3]],"date-time":"2007-05-03T18:24:15Z","timestamp":1178216655000},"source":"Crossref","is-referenced-by-count":24,"title":["Comparative analysis of long DNA sequences by per element information content using different contexts"],"prefix":"10.1186","volume":"8","author":[{"given":"Trevor I","family":"Dix","sequence":"first","affiliation":[]},{"given":"David R","family":"Powell","sequence":"additional","affiliation":[]},{"given":"Lloyd","family":"Allison","sequence":"additional","affiliation":[]},{"given":"Julie","family":"Bernal","sequence":"additional","affiliation":[]},{"given":"Samira","family":"Jaeger","sequence":"additional","affiliation":[]},{"given":"Linda","family":"Stern","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2007,5,3]]},"reference":[{"key":"1894_CR1","first-page":"8","volume-title":"Proceedings Sixth International Conf on Intelligent Systems in Molecular Biology","author":"L Allison","year":"1998","unstructured":"Allison L, Edgoose T, Dix TI: Compression of strings with approximate repeats. In Proceedings Sixth International Conf on Intelligent Systems in Molecular Biology. AAAI Press; 1998:8\u201316."},{"key":"1894_CR2","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1016\/S0097-8485(00)80006-6","volume":"24","author":"L Allison","year":"2000","unstructured":"Allison L, Stern L, Edgoose T, Dix TI: Sequence complexity for biological sequence analysis. Computers and Chemistry 2000, 24: 43\u201355.","journal-title":"Computers and Chemistry"},{"issue":"2","key":"1894_CR3","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1016\/S0166-6851(01)00388-7","volume":"118","author":"L Stern","year":"2001","unstructured":"Stern L, Allison L, Coppel RL, Dix TI: Discovering patterns in Plasmodium falciparum genomic DNA. Mol Biochem Parasitol 2001, 118(2):175\u2013186. 10.1016\/S0166-6851(01)00388-7","journal-title":"Mol Biochem Parasitol"},{"key":"1894_CR4","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1038\/nature02398","volume":"428","author":"M Matsuzaki","year":"2004","unstructured":"Matsuzaki M, et al.: Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 2004, 428: 653\u2013657. 10.1038\/nature02398","journal-title":"Nature"},{"key":"1894_CR5","unstructured":"PlasmoDB The Plasmodium Genome Resource[\n                    http:\/\/www.plasmodb.org\n                    \n                  ]"},{"key":"1894_CR6","doi-asserted-by":"publisher","first-page":"379-423, 623","DOI":"10.1002\/j.1538-7305.1948.tb01338.x","volume":"27","author":"CE Shannon","year":"1948","unstructured":"Shannon CE: A mathematical theory of communication. Bell Systems Technical Journal 1948, 27: 379\u2013423, 623\u2013656.","journal-title":"Bell Systems Technical Journal"},{"key":"1894_CR7","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1007\/978-3-540-30549-1_19","volume-title":"LNCS, AI 2004: Advances in Artificial Intelligence","author":"DR Powell","year":"2004","unstructured":"Powell DR, Allison L, Dix TI: Modelling alignment for non-random sequences. In LNCS, AI 2004: Advances in Artificial Intelligence. Volume 3339. Edited by: Webb GI, Yu X. Springer; 2004:203\u2013214."},{"key":"1894_CR8","first-page":"340","volume-title":"Data Compression Conference","author":"S Grumbach","year":"1993","unstructured":"Grumbach S, Tahi F: Compression of DNA sequences. In Data Compression Conference. IEEE Press; 1993:340\u2013350."},{"issue":"6","key":"1894_CR9","doi-asserted-by":"publisher","first-page":"875","DOI":"10.1016\/0306-4573(94)90014-0","volume":"30","author":"S Grumbach","year":"1994","unstructured":"Grumbach S, Tahi F: A new challenge for compression algorithms: Genetic sequences. Information Processing and Management 1994, 30(6):875\u2013866. 10.1016\/0306-4573(94)90014-0","journal-title":"Information Processing and Management"},{"issue":"2","key":"1894_CR10","doi-asserted-by":"publisher","first-page":"1696","DOI":"10.1093\/bioinformatics\/18.12.1696","volume":"18","author":"X Chen","year":"2002","unstructured":"Chen X, Li M, Ma B, John T: DNACompress: Fast and effective DNA sequence compression. Bioinformatics 2002, 18(2):1696\u20131698. 10.1093\/bioinformatics\/18.12.1696","journal-title":"Bioinformatics"},{"key":"1894_CR11","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1089\/cmb.1999.6.125","volume":"6","author":"D Loewenstern","year":"1999","unstructured":"Loewenstern D, Yianilos P: Significantly lower entropy estimates for natural DNA sequences. J Computational Biology 1999, 6: 125\u2013142.","journal-title":"J Computational Biology"},{"key":"1894_CR12","doi-asserted-by":"publisher","first-page":"1046","DOI":"10.1145\/1055709.1055711","volume":"23","author":"G Korodi","year":"2005","unstructured":"Korodi G, Tabus I: An efficient normalized maximum likelihood algorithm for DNA sequence compression. ACM Trans Information Systems 2005, 23: 1046\u20138188. 10.1145\/1055709.1055711","journal-title":"ACM Trans Information Systems"},{"key":"1894_CR13","first-page":"43","volume-title":"Data Compression Conference","author":"MD Cao","year":"2007","unstructured":"Cao MD, Dix TI, Allison L, Mears C: A Fast Statistical Biological Sequence Compressor for Pattern Discovery. In Data Compression Conference. IEEE Press; 2007:43\u201352."},{"key":"1894_CR14","volume-title":"Statistical and Inductive Inference by Minimum Message Length","author":"CS Wallace","year":"2005","unstructured":"Wallace CS: Statistical and Inductive Inference by Minimum Message Length. Springer Verlag; 2005."},{"key":"1894_CR15","unstructured":"Approximate Repeats Model implementation[\n                    ftp:\/\/ftp.csse.monash.edu.au\/software\/DNAcompression\/\n                    \n                  ]"},{"key":"1894_CR16","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1109\/TIT.1977.1055714","volume":"IT-23","author":"J Ziv","year":"1977","unstructured":"Ziv J, Lempel A: A universal algorithm for sequential data compression. IEEE Trans Information Theory 1977, IT-23: 337\u2013343. 10.1109\/TIT.1977.1055714","journal-title":"IEEE Trans Information Theory"},{"key":"1894_CR17","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"TF Smith","year":"1981","unstructured":"Smith TF, Waterman MS: Identification of Common Molecular Subsequences. J Mol Biol 1981, 147: 195\u2013197. 10.1016\/0022-2836(81)90087-5","journal-title":"J Mol Biol"},{"key":"1894_CR18","unstructured":"Kyoto Encyclopedia of Genes and Genomes[\n                    http:\/\/www.genome.jp\/kegg\n                    \n                  ]"},{"key":"1894_CR19","doi-asserted-by":"publisher","first-page":"1126","DOI":"10.1126\/science.282.5391.1126","volume":"282","author":"MJ Gardner","year":"1998","unstructured":"Gardner MJ, et al.: Chromosome 2 Sequence of the Human Malaria Parasite Plasmodium falciparum . Science 1998, 282: 1126\u20131132. 10.1126\/science.282.5391.1126","journal-title":"Science"},{"issue":"11","key":"1894_CR20","doi-asserted-by":"publisher","first-page":"REVIEWS1031","DOI":"10.1186\/gb-2002-3-11-reviews1031","volume":"3","author":"BS Crabb","year":"2002","unstructured":"Crabb BS, Cowman AF: Plasmodium falciparum virulence determinants unveiled. Genome Biol 2002, 3(11):REVIEWS1031-. 10.1186\/gb-2002-3-11-reviews1031","journal-title":"Genome Biol"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-S2-S10.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-8-S2-S10\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-S2-S10.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T08:49:46Z","timestamp":1548233386000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-8-S2-S10"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,5]]},"references-count":20,"journal-issue":{"issue":"S2","published-print":{"date-parts":[[2007,5]]}},"alternative-id":["1894"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-8-s2-s10","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,5]]},"article-number":"S10"}}