{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,10,11]],"date-time":"2023-10-11T18:00:41Z","timestamp":1697047241377},"reference-count":16,"publisher":"Springer Science and Business Media LLC","issue":"S2","license":[{"start":{"date-parts":[[2007,5,1]],"date-time":"2007-05-01T00:00:00Z","timestamp":1177977600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2007,5]]},"DOI":"10.1186\/1471-2105-8-s2-s9","type":"journal-article","created":{"date-parts":[[2007,5,3]],"date-time":"2007-05-03T18:24:34Z","timestamp":1178216674000},"source":"Crossref","is-referenced-by-count":7,"title":["Constrained hidden Markov models for population-based haplotyping"],"prefix":"10.1186","volume":"8","author":[{"given":"Niels","family":"Landwehr","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Taneli","family":"Mielik\u00e4inen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lauri","family":"Eronen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hannu","family":"Toivonen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Heikki","family":"Mannila","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2007,5,3]]},"reference":[{"key":"1893_CR1","doi-asserted-by":"publisher","first-page":"1299","DOI":"10.1038\/nature04226","volume":"437","author":"The International HapMap Consortium","year":"2005","unstructured":"The International HapMap Consortium: A haplotype map of the human genome. Nature 2005, 437: 1299\u20131320. 10.1038\/nature04226","journal-title":"Nature"},{"key":"1893_CR2","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1186\/1479-7364-2-1-39","volume":"2","author":"R Salem","year":"2005","unstructured":"Salem R, Wessel J, Schork N: A comprehensive literature review of haplotyping software and methods for use with unrelated individuals. Human Genomics 2005, 2: 39\u201366.","journal-title":"Human Genomics"},{"key":"1893_CR3","first-page":"26","volume-title":"Computational Methods for SNPs and Haplotype Inference, Volume 2983 of Lecture Notes in Computer Science","author":"B Halld\u00f3rsson","year":"2004","unstructured":"Halld\u00f3rsson B, Bafna V, Edwards N, Lippert R, Yooseph S, Istrail S: A Survey of Computational Methods for Determining Haplotypes. Computational Methods for SNPs and Haplotype Inference, Volume 2983 of Lecture Notes in Computer Science 2004, 26\u201347."},{"issue":"2","key":"1893_CR4","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1109\/5.18626","volume":"77","author":"L Rabiner","year":"1989","unstructured":"Rabiner L: A tutorial on hidden Markov models and selected applications in speech recognition. Proceedings of the IEEE 1989, 77(2):257\u2013286. 10.1109\/5.18626","journal-title":"Proceedings of the IEEE"},{"key":"1893_CR5","first-page":"140","volume-title":"WABI, Volume 3692 of Lecture Notes in Computer Science","author":"P Rastas","year":"2005","unstructured":"Rastas P, Koivisto M, Mannila H, Ukkonen E: A hidden Markov technique for haplotype reconstruction. In WABI, Volume 3692 of Lecture Notes in Computer Science. Edited by: Casadio R, Myers G. Springer; 2005:140\u2013151."},{"key":"1893_CR6","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1086\/502802","volume":"78","author":"P Scheet","year":"2006","unstructured":"Scheet P, Stephens M: A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 2006, 78: 629\u2013644. 10.1086\/502802","journal-title":"Am J Hum Genet"},{"key":"1893_CR7","first-page":"104","volume-title":"Pacific Symposium on Biocomputing","author":"L Eronen","year":"2004","unstructured":"Eronen L, Geerts F, Toivonen H: A Markov chain approach to reconstruction of long haplotypes. In Pacific Symposium on Biocomputing. Edited by: Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE. World Scientific; 2004:104\u2013115."},{"key":"1893_CR8","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1038\/ng1001-229","volume":"29","author":"M Daly","year":"2001","unstructured":"Daly M, Rioux J, Schaffner S, Hudson T, Lander E: High-resolution haplotype structure in the human genome. Nature Genetics 2001, 29: 229\u2013232. 10.1038\/ng1001-229","journal-title":"Nature Genetics"},{"key":"1893_CR9","first-page":"307","volume-title":"Advances in Knowledge Discovery and Data Mining","author":"R Agrawal","year":"1996","unstructured":"Agrawal R, Mannila H, Srikant R, Toivonen H, Verkamo A: Fast discovery of association rules. In Advances in Knowledge Discovery and Data Mining. Edited by: Fayyad U, Piatetsky-Shapiro G, Smyth P, Uthurusamy R. AAAI\/MIT Press; 1996:307\u2013328."},{"key":"1893_CR10","unstructured":"Landwehr N, Mielik\u00e4inen T, Eronen L, Toivonen H, Mannila H: SpaMM \u2013 a haplotype reconstruction method.[\n                    http:\/\/www.informatik.uni-freiburg.de\/~landwehr\/haplotyping.html\n                    \n                  ]"},{"key":"1893_CR11","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1086\/428594","volume":"76","author":"M Stephens","year":"2005","unstructured":"Stephens M, Scheet P: Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet 2005, 76: 449\u2013462. 10.1086\/428594","journal-title":"Am J Hum Genet"},{"issue":"10","key":"1893_CR12","doi-asserted-by":"publisher","first-page":"1243","DOI":"10.1089\/cmb.2005.12.1243","volume":"12","author":"G Kimmel","year":"2005","unstructured":"Kimmel G, Shamir R: A block-free hidden Markov model for genotypes and its applications to disease association. Journal of Computational Biology 2005, 12(10):1243\u20131259. 10.1089\/cmb.2005.12.1243","journal-title":"Journal of Computational Biology"},{"key":"1893_CR13","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1186\/1471-2105-7-542","volume":"7","author":"L Eronen","year":"2006","unstructured":"Eronen L, Geerts F, Toivonen H: HaploRec: efficient and accurate large-scale reconstruction of haplotypes. BMC Bioinformatics 2006, 7: 542. 10.1186\/1471-2105-7-542","journal-title":"BMC Bioinformatics"},{"key":"1893_CR14","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1093\/bioinformatics\/18.2.337","volume":"18","author":"R Hudson","year":"2002","unstructured":"Hudson R: Generating samples under a wright-fisher neutral model of genetic variation. Bioinformatics 2002, 18: 337\u2013338. 10.1093\/bioinformatics\/18.2.337","journal-title":"Bioinformatics"},{"key":"1893_CR15","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1038\/nrg1522","volume":"6","author":"W Wang","year":"2005","unstructured":"Wang W, Barratt B, Clayton D, Todd J: Genome-wide association studies: theoretical and practical concerns. Nature Reviews Genetics 2005, 6: 109\u2013118. 10.1038\/nrg1522","journal-title":"Nature Reviews Genetics"},{"key":"1893_CR16","doi-asserted-by":"publisher","first-page":"1913","DOI":"10.1093\/hmg\/8.10.1913","volume":"8","author":"L Peltonen","year":"1999","unstructured":"Peltonen L, Jalanko A, Varilo T: Molecular genetics of the finnish disease heritage. Human Molecular Genetics 1999, 8: 1913\u20131923. 10.1093\/hmg\/8.10.1913","journal-title":"Human Molecular Genetics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-S2-S9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-8-S2-S9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-8-S2-S9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T08:50:34Z","timestamp":1548233434000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-8-S2-S9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,5]]},"references-count":16,"journal-issue":{"issue":"S2","published-print":{"date-parts":[[2007,5]]}},"alternative-id":["1893"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-8-s2-s9","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,5]]},"article-number":"S9"}}