{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,5,13]],"date-time":"2024-05-13T04:35:07Z","timestamp":1715574907996},"reference-count":39,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2008,2,4]],"date-time":"2008-02-04T00:00:00Z","timestamp":1202083200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2008,12]]},"DOI":"10.1186\/1471-2105-9-81","type":"journal-article","created":{"date-parts":[[2008,2,5]],"date-time":"2008-02-05T07:13:38Z","timestamp":1202195618000},"source":"Crossref","is-referenced-by-count":14,"title":["Visualizing and clustering high throughput sub-cellular localization imaging"],"prefix":"10.1186","volume":"9","author":[{"given":"Nicholas A","family":"Hamilton","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rohan D","family":"Teasdale","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2008,2,4]]},"reference":[{"issue":"34","key":"2066_CR1","doi-asserted-by":"publisher","first-page":"D213","DOI":"10.1093\/nar\/gkj069","volume":"1","author":"Fink J.L","year":"2006","unstructured":"Fink J.L, Aturaliya R.N, Davis M.J, Zhang F, Hanson K, Teasdale M.S, Teasdale R.D: LOCATE: A Protein Subcellular Localization Database. Nucl Acids Res 2006, 1(34):D213-D217. 10.1093\/nar\/gkj069","journal-title":"Nucl Acids Res"},{"key":"2066_CR2","volume-title":"Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics","author":"J.L Stow","year":"2005","unstructured":"Stow J.L, Teasdale R.D: Expression and localization of proteins in mammalian cells. In Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. Edited by: Little P., Quackenbush J.. John Wiley and Sons; 2005."},{"key":"2066_CR3","doi-asserted-by":"publisher","first-page":"785","DOI":"10.1038\/nmeth1005-785","volume":"2","author":"Bonetta L","year":"2005","unstructured":"Bonetta L: Flow cytometry smaller and better. Nature Methods 2005, 2: 785 -7795. 10.1038\/nmeth1005-785","journal-title":"Nature Methods"},{"issue":"4","key":"2066_CR4","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1038\/nrd2008","volume":"5","author":"P Lang","year":"2006","unstructured":"Lang P, Yeow K, Nichols A, Scheer A: Cellular imaging in drug discovery. Nature Reviews Drug Discovery 2006, 5(4):343\u2013356. 10.1038\/nrd2008","journal-title":"Nature Reviews Drug Discovery"},{"issue":"5699","key":"2066_CR5","doi-asserted-by":"publisher","first-page":"1194","DOI":"10.1126\/science.1100709","volume":"306","author":"Z.E Perlman","year":"2004","unstructured":"Perlman Z.E, Slack M.D, Feng Y, Mitchison T.J, Wu L.F, Altschuler S.J: Multidimensional drug profiling by automated microscopy. Science 2004, 306(5699):1194\u20131198. 10.1126\/science.1100709","journal-title":"Science"},{"issue":"10","key":"2066_CR6","doi-asserted-by":"publisher","first-page":"1223","DOI":"10.1038\/nbt1006-1223","volume":"24","author":"R.F Murphy","year":"2006","unstructured":"Murphy R.F: Putting proteins on the map. Nature Biotech 2006, 24(10):1223\u20131224. 10.1038\/nbt1006-1223","journal-title":"Nature Biotech"},{"issue":"6959","key":"2066_CR7","doi-asserted-by":"publisher","first-page":"686","DOI":"10.1038\/nature02026","volume":"425","author":"W.K Huh","year":"2003","unstructured":"Huh W.K, Falvo J.V, Gerke L.C, Carroll A.S, Howson R.W, Weissman J.S, O'Shea E.K: Global analysis of protein localization in budding yeast. Nature 2003, 425(6959):686\u2013691. 10.1038\/nature02026","journal-title":"Nature"},{"key":"2066_CR8","doi-asserted-by":"publisher","first-page":"3715","DOI":"10.1242\/jcs.013623","volume":"120","author":"R Wollman","year":"2007","unstructured":"Wollman R, Stuurman N: High throughput microscopy: from raw images to discoveries. J Cell Sci 2007, 120: 3715\u20133722. 10.1242\/jcs.013623","journal-title":"J Cell Sci"},{"issue":"6","key":"2066_CR9","doi-asserted-by":"publisher","first-page":"1130","DOI":"10.1101\/gr.2383804","volume":"14","author":"Conrad C","year":"2004","unstructured":"Conrad C, Erfle H, Warnat P, Daigle N, Lorch T, Ellenberg J, Pepperkok R, Eils R: Automatic identification of subcellular phenotypes on human cell arrays. Genome Research 2004, 14(6):1130\u20131136. 10.1101\/gr.2383804","journal-title":"Genome Research"},{"issue":"8","key":"2066_CR10","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1186\/1471-2105-8-110","volume":"30","author":"N.S Hamilton","year":"2007","unstructured":"Hamilton N.S, Pantelic R, Hanson K, Karunaratne S, Teasdale R.D: Fast automated cell phenotype image classification. BMC Bioinformatics 2007, 30(8):110. 10.1186\/1471-2105-8-110","journal-title":"BMC Bioinformatics"},{"issue":"5","key":"2066_CR11","doi-asserted-by":"publisher","first-page":"893","DOI":"10.1117\/1.1779233","volume":"9","author":"Huang K","year":"2004","unstructured":"Huang K, Murphy R.F: From quantitative microscopy to automated image understanding. J Biomed Opt 2004, 9(5):893\u2013912. 10.1117\/1.1779233","journal-title":"J Biomed Opt"},{"key":"2066_CR12","doi-asserted-by":"crossref","unstructured":"Glory E, Murphy R.F: Automated subcellular location determination and high-throughput microscopy. Developmental Cell 12(1):7\u201316. 10.1016\/j.devcel.2006.12.007","DOI":"10.1016\/j.devcel.2006.12.007"},{"issue":"2","key":"2066_CR13","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1155\/JBB.2005.87","volume":"2005","author":"Chen X","year":"2005","unstructured":"Chen X, Murphy R.F: Objective Clustering of Proteins Based on Subcellular Location Patterns. J Biomed Biotech 2005, 2005(2):87\u201395. 10.1155\/JBB.2005.87","journal-title":"J Biomed Biotech"},{"key":"2066_CR14","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1109\/ISBI.2002.1029259","volume-title":"Proc 2002 IEEE Intl Symp Biomed Imaging","author":"Huang K","year":"2002","unstructured":"Huang K, Lin J, Gajnak J.A, Murphy R.F: Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database. Proc 2002 IEEE Intl Symp Biomed Imaging 2002, 325\u2013328."},{"key":"2066_CR15","doi-asserted-by":"crossref","unstructured":"Murphy R.F, Velliste M, Porreca G: Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images. In J VLSI Signal Process Syst. Volume 35. Kluwer Academic Publishers; 2003:311\u2013321. 10.1023\/B:VLSI.0000003028.71666.44","DOI":"10.1023\/B:VLSI.0000003028.71666.44"},{"key":"2066_CR16","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1034\/j.1600-0854.2002.30108.x","volume":"3","author":"Roques E.J.S","year":"2002","unstructured":"Roques E.J.S, Murphy R.F: Objective evaluation of differences in protein subcellular localisation. Traffic 2002, 3: 61\u201365. 10.1034\/j.1600-0854.2002.30108.x","journal-title":"Traffic"},{"key":"2066_CR17","unstructured":"Hamilton N: iCluster java applet demonstration.[ http:\/\/research.imb.uq.edu.au\/~nhamilton\/iCluster\/ ]"},{"key":"2066_CR18","volume-title":"Conferences in Research and the Practice in Information Technology","author":"Hamilton N","year":"2006","unstructured":"Hamilton N, Pantelic R, Hanson K, Fink J.L, Karunaratne S, Teasdale R.D: Automated sub-cellular phenotype classification. In Conferences in Research and the Practice in Information Technology. Volume 73. Australian Computer Society; 2006."},{"key":"2066_CR19","volume-title":"Protein Localization by Fluorescence Microscopy a Practical Approach","author":"Allan V.J.","year":"2000","unstructured":"Allan V.J.: Protein Localization by Fluorescence Microscopy a Practical Approach. Oxford University Press; 2000."},{"key":"2066_CR20","doi-asserted-by":"publisher","first-page":"D230","DOI":"10.1093\/nar\/gkm950","volume":"36","author":"Sprenger J","year":"2008","unstructured":"Sprenger J, Lynn J.L, Karunaratne S, Hanson K, Hamilton N, Teasdale R.D: LOCATE: A Mammalian Protein Subcellular Localization Database. Nucleic Acids Res 2008, 36: D230-D233. 10.1093\/nar\/gkm950","journal-title":"Nucleic Acids Res"},{"issue":"5","key":"2066_CR21","doi-asserted-by":"publisher","first-page":"768","DOI":"10.1109\/PROC.1979.11328","volume":"67","author":"Haralick R.M","year":"1979","unstructured":"Haralick R.M: Statistical and structural approaches to texture. Proceedings of the IEEE 1979, 67(5):768\u2013804.","journal-title":"Proceedings of the IEEE"},{"key":"2066_CR22","first-page":"173","volume":"5","author":"Sammon W","year":"1969","unstructured":"Sammon W: A nonlinear mapping for data analysis. IEEE Transactions on Computers 1969, 5: 173\u2013175.","journal-title":"IEEE Transactions on Computers"},{"key":"2066_CR23","first-page":"97","volume":"32","author":"Deng D","year":"2004","unstructured":"Deng D, Zhang Z, Purvis M: Visualisation and comparison of image collections based on self-organised maps. Conferences in Research and Practice in Information Technology 2004, 32: 97\u2013102.","journal-title":"Conferences in Research and Practice in Information Technology"},{"key":"2066_CR24","first-page":"255","volume-title":"5th Conference on Neural Networks and Soft Computing","author":"Naud A","year":"2000","unstructured":"Naud A, Duch W: Interactive data exploration using mds mapping. 5th Conference on Neural Networks and Soft Computing 2000, 255\u2013260."},{"key":"2066_CR25","doi-asserted-by":"publisher","first-page":"548","DOI":"10.1109\/72.377962","volume":"6","author":"Kraaijveld M.A","year":"1995","unstructured":"Kraaijveld M.A, Mao J, Jain A.K: A nonlinear projection method based on Kohonen's topology preserving maps. IEEE Transactions on Neural Networks 1995, 6: 548\u2013559. 10.1109\/72.377962","journal-title":"IEEE Transactions on Neural Networks"},{"key":"2066_CR26","series-title":"Lecture Notes in Computer Science","volume-title":"Fifth Workshop of the Cross-Language Evaluation Forum (CLEF 2004)","author":"Clough P","year":"2005","unstructured":"Clough P, Mueller H, Sanderson M: The CLEF Cross Language Image Retrieval Track (ImageCLEF) 2004. Lecture Notes in Computer Science. In Fifth Workshop of the Cross-Language Evaluation Forum (CLEF 2004). Edited by: Peters C, Clough P, Gonzalo J, Jones G, Kluck M, Magnini B. Heidelberg , Springer; 2005."},{"issue":"5","key":"2066_CR27","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1016\/S0167-8655(00)00118-5","volume":"22","author":"M\u00fcller H","year":"2001","unstructured":"M\u00fcller H, M\u00fcller W, McG. Squire D, Marchand-Maillet S, Pun T: Performance evaluation in content-based image retrieval: overview and proposals. Pattern Recognition Letters 2001, 22(5):593\u2013601. 10.1016\/S0167-8655(00)00118-5","journal-title":"Pattern Recognition Letters"},{"key":"2066_CR28","unstructured":"Everingham M, Van Gool L, Williams C. K. I, Winn J, Zisserman A: The Pascal Visual Object Classes Challenge 2007 (VOC2007).[ http:\/\/www.pascal-network.org\/challenges\/VOC\/voc2007\/workshop\/index.html ]"},{"key":"2066_CR29","unstructured":"Cawley G, Talbot N: Sammon mapping Matlab code.[ http:\/\/theoval.sys.uea.ac.uk\/matlab\/default.html ]"},{"key":"2066_CR30","unstructured":"Octave[ http:\/\/www.octave.org\/ ]"},{"key":"2066_CR31","unstructured":"The processing web site[ http:\/\/processing.org\/ ]"},{"issue":"4","key":"2066_CR32","doi-asserted-by":"publisher","first-page":"945","DOI":"10.1016\/S0031-3203(01)00086-3","volume":"35","author":"Antani S","year":"2002","unstructured":"Antani S, Kasturi R, Jain R: A survey of the use of pattern recognition methods for abstracting, indexing and retrieval of images and video. Pattern Recognition 2002, 35(4):945\u2013965. 10.1016\/S0031-3203(01)00086-3","journal-title":"Pattern Recognition"},{"issue":"1","key":"2066_CR33","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1145\/1126004.1126005","volume":"2","author":"Lew M","year":"2006","unstructured":"Lew M, Sebe N, Djeraba C, Jain R: Content-based Multimedia Information Retrieval: State of the Art and Challenges. ACM Transactions on Multimedia Computing, Communications, and Applications 2006, 2(1):1\u201319. 10.1145\/1126004.1126005","journal-title":"ACM Transactions on Multimedia Computing, Communications, and Applications"},{"issue":"Pt 2","key":"2066_CR34","first-page":"829","volume":"11","author":"Antani S","year":"2004","unstructured":"Antani S, Long L.R, Thoma G.R: Content-based image retrieval for large biomedical image archives. Medinfo 2004, 11(Pt 2):829\u2013833.","journal-title":"Medinfo"},{"key":"2066_CR35","volume-title":"Biomedical Image Analysis","author":"Rangayyan R.M","year":"2005","unstructured":"Rangayyan R.M: Biomedical Image Analysis. Boca Raton , CRC Press; 2005."},{"key":"2066_CR36","first-page":"190","volume-title":"Does organisation by similarity assist image browsing? : Seattle, Washington, United States .","author":"Rodden K","year":"2001","unstructured":"Rodden K, Basalaj W, Sinclair D, Wood K: Does organisation by similarity assist image browsing? : Seattle, Washington, United States . ACM; 2001:190\u2013197."},{"key":"2066_CR37","unstructured":"ImageSorter V2[ http:\/\/mmk.f4.fhtw-berlin.de\/?page_id=88 ]"},{"key":"2066_CR38","volume-title":"Exploratory Data Analysis in Empirical Research, Studies in Classification, Data Analysis and Knowledge Organization","author":"Kreuseler M","year":"2003","unstructured":"Kreuseler M, Nocke T, Schumann H: Integration of Clustering and Visualization Techniques for Visual Data Analysis. In Exploratory Data Analysis in Empirical Research, Studies in Classification, Data Analysis and Knowledge Organization. Edited by: Opitz O., Schwaiger M.. Berlin-Heidelberg , Springer-Verlag; 2003."},{"key":"2066_CR39","first-page":"440","volume-title":"Browsing large collections of images through unconventional visualization techniques: Venezia, Italy .","author":"Porta M","year":"2006","unstructured":"Porta M: Browsing large collections of images through unconventional visualization techniques: Venezia, Italy . Edited by: Celentano A. Association for computing machinery; 2006:440 -4444."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-9-81.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-9-81\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-9-81.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,16]],"date-time":"2023-05-16T07:32:44Z","timestamp":1684222364000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-9-81"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,2,4]]},"references-count":39,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2008,12]]}},"alternative-id":["2066"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-9-81","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2008,2,4]]},"article-number":"81"}}