{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,12,8]],"date-time":"2023-12-08T08:53:46Z","timestamp":1702025626078},"reference-count":19,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2008,2,13]],"date-time":"2008-02-13T00:00:00Z","timestamp":1202860800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2008,12]]},"DOI":"10.1186\/1471-2105-9-98","type":"journal-article","created":{"date-parts":[[2008,2,13]],"date-time":"2008-02-13T19:13:22Z","timestamp":1202930002000},"source":"Crossref","is-referenced-by-count":5,"title":["Statistical methodology for the analysis of dye-switch microarray experiments"],"prefix":"10.1186","volume":"9","author":[{"given":"Tristan","family":"Mary-Huard","sequence":"first","affiliation":[]},{"given":"Julie","family":"Aubert","sequence":"additional","affiliation":[]},{"given":"Nadera","family":"Mansouri-Attia","sequence":"additional","affiliation":[]},{"given":"Olivier","family":"Sandra","sequence":"additional","affiliation":[]},{"given":"Jean-Jacques","family":"Daudin","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2008,2,13]]},"reference":[{"issue":"8","key":"2083_CR1","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1038\/nrg863","volume":"3","author":"Y Yang","year":"2002","unstructured":"Yang Y, Speed T: Design issues for cDNA microarray experiments. Nat Rev Genet 2002, 3(8):579\u201388.","journal-title":"Nat Rev Genet"},{"key":"2083_CR2","doi-asserted-by":"publisher","first-page":"490","DOI":"10.1038\/ng1031","volume":"32","author":"G Churchill","year":"2002","unstructured":"Churchill G: Fundamentals of experimental design for cDNA microarrays. Nat Genet 2002, 32: 490\u2013495. 10.1038\/ng1031","journal-title":"Nat Genet"},{"issue":"4","key":"2083_CR3","doi-asserted-by":"publisher","first-page":"e15","DOI":"10.1093\/nar\/30.4.e15","volume":"30","author":"Y Yang","year":"2002","unstructured":"Yang Y, Dudoit S, Luu P, Speed T: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nuclear Acids Res 2002, 30(4):e15. 10.1093\/nar\/30.4.e15","journal-title":"Nuclear Acids Res"},{"key":"2083_CR4","first-page":"203","volume":"12","author":"M Kerr","year":"2002","unstructured":"Kerr M, Afshari C, Bennett L, Bushel P, Martinez J, Walker N, Churchill G: Statistical Analysis of a gene expression microarray experiment with replication. Statistica Sinica 2002, 12: 203\u2013217.","journal-title":"Statistica Sinica"},{"issue":"7","key":"2083_CR5","doi-asserted-by":"publisher","first-page":"803","DOI":"10.1093\/bioinformatics\/btg076","volume":"19","author":"K Dobbin","year":"2003","unstructured":"Dobbin K, Shih J, Simon R: Statistical design of reverse dye microarrays. Bioinformatics 2003, 19(7):803\u2013810. 10.1093\/bioinformatics\/btg076","journal-title":"Bioinformatics"},{"issue":"9","key":"2083_CR6","doi-asserted-by":"publisher","first-page":"1995","DOI":"10.1093\/bioinformatics\/bti302","volume":"21","author":"M Martin-Magniette","year":"2005","unstructured":"Martin-Magniette M, Aubert J, Cabannes E, Daudin J: Evaluation of the gene-specific dye bias in cDNA microarray experiments. Bioinformatics 2005, 21(9):1995\u20132000. 10.1093\/bioinformatics\/bti302","journal-title":"Bioinformatics"},{"issue":"10","key":"2083_CR7","doi-asserted-by":"publisher","first-page":"2430","DOI":"10.1093\/bioinformatics\/bti378","volume":"21","author":"K Dobbin","year":"2005","unstructured":"Dobbin K, Kawasaki E, Petersen D, Simon R: Characterizing dye bias in microarray experiments. Bioinformatics 2005, 21(10):2430\u20132437. 10.1093\/bioinformatics\/bti378","journal-title":"Bioinformatics"},{"key":"2083_CR8","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1038\/ng983","volume":"32","author":"M Oleksiak","year":"2002","unstructured":"Oleksiak M, Churchill G, Crawford D: Variation in gene expression within and among natural populations. Nat Genet 2002, 32: 261\u2013266. 10.1038\/ng983","journal-title":"Nat Genet"},{"issue":"14","key":"2083_CR9","doi-asserted-by":"publisher","first-page":"5425","DOI":"10.1073\/pnas.0507648103","volume":"103","author":"A Whitehead","year":"2006","unstructured":"Whitehead A, Crawford D: Neutral and adaptive variation in gene expression. Proc Natl Acad Sci USA 2006, 103(14):5425\u20135430. 10.1073\/pnas.0507648103","journal-title":"Proc Natl Acad Sci USA"},{"key":"2083_CR10","doi-asserted-by":"publisher","first-page":"819","DOI":"10.1089\/10665270050514954","volume":"7","author":"M Kerr","year":"2000","unstructured":"Kerr M, Martin M, Churchill G: Analysis of variance for gene expression microarray data. J Comput Biol 2000, 7: 819\u2013837. 10.1089\/10665270050514954","journal-title":"J Comput Biol"},{"key":"2083_CR11","doi-asserted-by":"publisher","DOI":"10.1002\/0470011084","volume-title":"Statistics for Microarrays: Design, Analysis and Inference","author":"E Wit","year":"2004","unstructured":"Wit E, McClure J: Statistics for Microarrays: Design, Analysis and Inference. Chichester: Wiley; 2004."},{"key":"2083_CR12","volume-title":"Silico Biology","author":"J Landgrebe","year":"2004","unstructured":"Landgrebe J, Bretz F, Brunner E: Efficient two-sample designs for microarray experiments with biological replications. Silico Biology 2004., 4:"},{"issue":"2","key":"2083_CR13","doi-asserted-by":"publisher","first-page":"499","DOI":"10.1016\/j.csda.2004.08.014","volume":"50","author":"J Landgrebe","year":"2006","unstructured":"Landgrebe J, Bretz F, Brunner E: Efficient design and analysis of two colour factorial microarray experiments. Comput Stat & Data Anal 2006, 50(2):499\u2013517. 10.1016\/j.csda.2004.08.014","journal-title":"Comput Stat & Data Anal"},{"issue":"5","key":"2083_CR14","first-page":"204","volume":"58","author":"N Mansouri","year":"2007","unstructured":"Mansouri N, Sandra O, Aubert J, Everts R, Galio L, Heyman Y, Audouart C, Degrelle S, Hue I, Yang X, Lewin H, JP R: Identification of differentially regulated genes in the endometrium of cyclic and pregnant cows using a high-throughput transcriptome analysis. American Journal of Reproductive Immunology 2007, 58(5):204\u2013220.","journal-title":"American Journal of Reproductive Immunology"},{"issue":"5","key":"2083_CR15","doi-asserted-by":"publisher","first-page":"817","DOI":"10.1111\/j.1467-9876.2005.00519.x","volume":"54","author":"E Wit","year":"2005","unstructured":"Wit E, Nobile A, Khanin R: Near-optimal designs for dual channel microarray studies. J R Stat Soc C 2005, 54(5):817\u2013830. 10.1111\/j.1467-9876.2005.00519.x","journal-title":"J R Stat Soc C"},{"key":"2083_CR16","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1093\/bioinformatics\/17.6.509","volume":"17","author":"P Baldi","year":"2001","unstructured":"Baldi P, Long A: A Bayesian Framework for the Analysis of Microarray Expression Data: Regularized t-Test and Statistical Inferences of Gene Changes. Bioinformatics 2001, 17: 509\u2013519. 10.1093\/bioinformatics\/17.6.509","journal-title":"Bioinformatics"},{"issue":"4","key":"2083_CR17","doi-asserted-by":"publisher","first-page":"502","DOI":"10.1093\/bioinformatics\/bti023","volume":"21","author":"P Delmar","year":"2005","unstructured":"Delmar P, Robin S, Daudin J: VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data. Bioinformatics 2005, 21(4):502\u2013508. 10.1093\/bioinformatics\/bti023","journal-title":"Bioinformatics"},{"key":"2083_CR18","doi-asserted-by":"publisher","first-page":"Article 3","DOI":"10.2202\/1544-6115.1027","volume":"3","author":"G Smyth","year":"2004","unstructured":"Smyth G: Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 2004, 3: Article 3. 10.2202\/1544-6115.1027","journal-title":"Statistical Applications in Genetics and Molecular Biology"},{"key":"2083_CR19","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"V Tusher","year":"2001","unstructured":"Tusher V, Tibshirani R, Chu C: Significance analysis of microarrays applied to transcriptional response to ionizing radiations. PNAS 2001, 98: 5116\u20135121. 10.1073\/pnas.091062498","journal-title":"PNAS"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-9-98.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-9-98\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-9-98.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T09:03:35Z","timestamp":1548147815000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-9-98"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,2,13]]},"references-count":19,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2008,12]]}},"alternative-id":["2083"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-9-98","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2008,2,13]]},"article-number":"98"}}