{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,10]],"date-time":"2026-03-10T12:38:38Z","timestamp":1773146318930,"version":"3.50.1"},"reference-count":23,"publisher":"Springer Science and Business Media LLC","issue":"S8","license":[{"start":{"date-parts":[[2008,7,22]],"date-time":"2008-07-22T00:00:00Z","timestamp":1216684800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2008,12]]},"DOI":"10.1186\/1471-2105-9-s8-s3","type":"journal-article","created":{"date-parts":[[2008,7,22]],"date-time":"2008-07-22T18:14:23Z","timestamp":1216750463000},"source":"Crossref","is-referenced-by-count":65,"title":["Integrating biological data \u2013 the Distributed Annotation System"],"prefix":"10.1186","volume":"9","author":[{"given":"Andrew M","family":"Jenkinson","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mario","family":"Albrecht","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ewan","family":"Birney","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hagen","family":"Blankenburg","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thomas","family":"Down","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert D","family":"Finn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Henning","family":"Hermjakob","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tim JP","family":"Hubbard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rafael C","family":"Jimenez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Philip","family":"Jones","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andreas","family":"K\u00e4h\u00e4ri","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eugene","family":"Kulesha","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jos\u00e9 R","family":"Mac\u00edas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gabrielle A","family":"Reeves","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andreas","family":"Prli\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2008,7,22]]},"reference":[{"issue":"7146","key":"2659_CR1","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1038\/nature05874","volume":"447","author":"Consortium ENCODE Project","year":"2007","unstructured":"ENCODE Project Consortium: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007,447(7146):799\u2013816. 10.1038\/nature05874","journal-title":"Nature"},{"key":"2659_CR2","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1186\/1471-2105-2-7","volume":"2","author":"RD Dowell","year":"2001","unstructured":"Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L: The distributed annotation system. BMC Bioinformatics 2001, 2: 7. 10.1186\/1471-2105-2-7","journal-title":"BMC Bioinformatics"},{"key":"2659_CR3","doi-asserted-by":"crossref","unstructured":"Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, M\u00fcller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J: WormBase: new content and better access. Nucleic Acids Res 2007, (35 Database):D506\u2013510. 10.1093\/nar\/gkl818","DOI":"10.1093\/nar\/gkl818"},{"key":"2659_CR4","doi-asserted-by":"crossref","unstructured":"Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, Gr\u00e4f S, Haider S, Hammond M, Holland R, Howe KL, Howe K, Johnson N, Jenkinson A, K\u00e4h\u00e4ri A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Slater G, Smedley D, Spudich G, Trevanion S, Vilella AJ, Vogel J, White S, Wood M, Birney E, Cox T, Curwen V, Durbin R, Fernandez-Suarez X, Herrero J, Hubbard TJ, Kasprzyk A, Proctor G, Smith J, Ureta-Vidal A, Searle S: Ensembl 2008. Nucleic Acids Res 2008, (36 Database):D707\u2013714.","DOI":"10.1093\/nar\/gkm988"},{"key":"2659_CR5","first-page":"1069","volume-title":"Proceedings of UK e-Science All Hands Meeting 2004 (AHM04): 31st August \u2013 3rd September 2004; Nottingham, UK","author":"RD Finn","year":"2004","unstructured":"Finn RD, Prlic A, Das U, McNeil P, Mulder N, Velankar S, Andreeva A, Howorth D, Dibley M, Hubbard T, Apweiler R, Henrick K, Murzin A, Orengo C, Bateman A: eFamily: Bridging Sequence and Structure. In Proceedings of UK e-Science All Hands Meeting 2004 (AHM04): 31st August \u2013 3rd September 2004; Nottingham, UK. Edited by: Cox SJ. EPSRC; 2004:1069\u20131072."},{"key":"2659_CR6","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1186\/1471-2105-8-333","volume":"8","author":"A Prlic","year":"2007","unstructured":"Prlic A, Down TA, Kulesha E, Finn RD, K\u00e4h\u00e4ri A, Hubbard TJP: Integrating sequence and structural biology with DAS. BMC Bioinformatics 2007, 8: 333. 10.1186\/1471-2105-8-333","journal-title":"BMC Bioinformatics"},{"key":"2659_CR7","series-title":"Nucleic Acids Res","volume-title":"Integrating protein annotation resources through the Distributed Annotation System","author":"PI Olason","year":"2005","unstructured":"Olason PI: Integrating protein annotation resources through the Distributed Annotation System. Nucleic Acids Res 2005, (8 Web Server):W468\u2013470. 10.1093\/nar\/gki463"},{"issue":"Review 1","key":"2659_CR8","doi-asserted-by":"publisher","first-page":"R81","DOI":"10.1093\/hmg\/ddl086","volume":"15","author":"GA Reeves","year":"2006","unstructured":"Reeves GA, Thornton JM, the BioSapiens Network of Excellence: Integrating biological data through the genome. Hum Mol Genet 2006,15(Review 1):R81\u201387. 10.1093\/hmg\/ddl086","journal-title":"Hum Mol Genet"},{"key":"2659_CR9","unstructured":"The DAS 1.53 specification[ http:\/\/www.biodas.org\/documents\/spec.html ]"},{"key":"2659_CR10","first-page":"195","volume-title":"Data Integration in the Life Sciences Third International Workshop, DILS 2006: 20\u201322 July 2006; Hinxton","author":"A Prlic","year":"2006","unstructured":"Prlic A, Birney E, Cox T, Down TA, Finn R, Gr\u00e4af S, Jackson D, K\u00e4h\u00e4ri A, Kulesha E, Pettett R, Smith J, Stalker J, Hubbard TJP: The Distributed Annotation System for Integration of Biological Data. In Data Integration in the Life Sciences Third International Workshop, DILS 2006: 20\u201322 July 2006; Hinxton. Edited by: Leser U, Naumann F, Eckman B. Springer; 2006:195\u2013203."},{"key":"2659_CR11","series-title":"Nucleic Acids Res","first-page":"D281","volume-title":"The Pfam protein families database","author":"RD Finn","year":"2008","unstructured":"Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A: The Pfam protein families database. Nucleic Acids Res 2008, (36 Database):D281\u2013288."},{"issue":"Suppl 2","key":"2659_CR12","doi-asserted-by":"publisher","first-page":"ii40","DOI":"10.1093\/bioinformatics\/bti1106","volume":"21","author":"A Prlic","year":"2005","unstructured":"Prlic A, Down T, Hubbard TJ: Adding some SPICE to DAS. Bioinformatics 2005,21(Suppl 2):ii40-ii41. 10.1093\/bioinformatics\/bti1106","journal-title":"Bioinformatics"},{"issue":"2","key":"2659_CR13","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1016\/j.jsb.2007.02.004","volume":"158","author":"JR Mac\u00edas","year":"2007","unstructured":"Mac\u00edas JR, Jim\u00e9nez-Lozano N, Carazo JM: Integrating electron microscopy information into existing Distributed Annotation Systems. J Struct Biol 2007,158(2):205\u2013213. 10.1016\/j.jsb.2007.02.004","journal-title":"J Struct Biol"},{"key":"2659_CR14","doi-asserted-by":"publisher","first-page":"R44","DOI":"10.1186\/gb-2005-6-5-r44","volume":"6","author":"K Eilbeck","year":"2005","unstructured":"Eilbeck K, Lewis S, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M: The Sequence Ontology: A tool for the unification of genome annotations. Genome Biology 2005, 6: R44. 10.1186\/gb-2005-6-5-r44","journal-title":"Genome Biology"},{"key":"2659_CR15","unstructured":"The DASMIweb portal[ http:\/\/dasmi.de\/ ]"},{"key":"2659_CR16","unstructured":"iPfam interaction graph[ http:\/\/ipfam.sanger.ac.uk\/graph ]"},{"issue":"14","key":"2659_CR17","doi-asserted-by":"publisher","first-page":"3198","DOI":"10.1093\/bioinformatics\/bti506","volume":"21","author":"P Jones","year":"2005","unstructured":"Jones P, Vinod N, Down T, Hackmann A, Kahari A, Kretschmann E, Quinn A, Wieser D, Hermjakob H, Apweiler R: Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics 2005,21(14):3198\u20133199. 10.1093\/bioinformatics\/bti506","journal-title":"Bioinformatics"},{"key":"2659_CR18","unstructured":"Bio::Das::Lite DAS client library[ http:\/\/search.cpan.org\/~rpettett\/Bio-Das-Lite\/ ]"},{"key":"2659_CR19","unstructured":"Dasobert DAS client library[ http:\/\/www.spice-3d.org\/dasobert\/ ]"},{"issue":"12","key":"2659_CR20","doi-asserted-by":"publisher","first-page":"1568","DOI":"10.1093\/bioinformatics\/btl650","volume":"23","author":"RD Finn","year":"2007","unstructured":"Finn RD, Stalker JW, Jackson DK, Kulesha E, Clements J, Pettett R: ProServer: a simple, extensible Perl DAS server. Bioinformatics 2007,23(12):1568\u20131570. 10.1093\/bioinformatics\/btl650","journal-title":"Bioinformatics"},{"key":"2659_CR21","unstructured":"LDAS DAS server[ http:\/\/www.biodas.org\/servers\/LDAS.html ]"},{"key":"2659_CR22","unstructured":"Dazzle DAS server[ http:\/\/www.biojava.org\/wiki\/Dazzle ]"},{"key":"2659_CR23","unstructured":"MyDas DAS server[ http:\/\/code.google.com\/p\/mydas\/ ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-9-S8-S3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-9-S8-S3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-9-S8-S3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,12]],"date-time":"2019-05-12T21:39:33Z","timestamp":1557697173000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-9-S8-S3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,7,22]]},"references-count":23,"journal-issue":{"issue":"S8","published-print":{"date-parts":[[2008,12]]}},"alternative-id":["2659"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-9-s8-s3","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2008,7,22]]},"article-number":"S3"}}