{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T20:14:44Z","timestamp":1791231284356,"version":"4.1.0"},"reference-count":19,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Genomics"],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1186\/1471-2164-15-288","type":"journal-article","created":{"date-parts":[[2014,4,16]],"date-time":"2014-04-16T07:04:15Z","timestamp":1397631855000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":65,"title":["High-throughput sequencing of Bacillus anthracis in France: investigating genome diversity and population structure using whole-genome SNP discovery"],"prefix":"10.1186","volume":"15","author":[{"given":"Guillaume","family":"Girault","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yann","family":"Blouin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gilles","family":"Vergnaud","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sylviane","family":"Derzelle","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2014,4,16]]},"reference":[{"key":"5981_CR1","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1016\/j.mam.2009.08.003","volume":"30","author":"M Hugh-Jones","year":"2009","unstructured":"Hugh-Jones M, Blackburn J: The ecology of Bacillus anthracis. Mol Aspects Med. 2009, 30: 356-367. 10.1016\/j.mam.2009.08.003.","journal-title":"Mol Aspects Med"},{"key":"5981_CR2","doi-asserted-by":"publisher","first-page":"13536","DOI":"10.1073\/pnas.0403844101","volume":"101","author":"T Pearson","year":"2004","unstructured":"Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P: Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A. 2004, 101: 13536-13541. 10.1073\/pnas.0403844101.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"5981_CR3","doi-asserted-by":"publisher","first-page":"e461","DOI":"10.1371\/journal.pone.0000461","volume":"2","author":"MN Van Ert","year":"2007","unstructured":"Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Guenevier Z, Farlow J, Coker PR, Smith KL, Wang B, Kenefic LJ, Fraser-Liggett CM, Wagner DM, Keim P: Global genetic population structure of Bacillus anthracis. PLoS One. 2007, 2: e461-10.1371\/journal.pone.0000461.","journal-title":"PLoS One"},{"key":"5981_CR4","doi-asserted-by":"publisher","first-page":"e28274","DOI":"10.1371\/journal.pone.0028274","volume":"6","author":"CK Marston","year":"2011","unstructured":"Marston CK, Allen CA, Beaudry J, Price EP, Wolken SR, Pearson T, Keim P, Hoffmaster AR: Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. PLoS One. 2011, 6: e28274-10.1371\/journal.pone.0028274.","journal-title":"PLoS One"},{"key":"5981_CR5","doi-asserted-by":"publisher","first-page":"1307","DOI":"10.3201\/eid1808.111343","volume":"18","author":"EP Price","year":"2012","unstructured":"Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, Vipond R, Foster JT, Bergman NH, Burans J, Pearson T, Brooks T, Keim P: Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerg Infect Dis. 2012, 18: 1307-1313. 10.3201\/eid1808.111343.","journal-title":"Emerg Infect Dis"},{"key":"5981_CR6","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1128\/JCM.01233-06","volume":"45","author":"MN Van Ert","year":"2007","unstructured":"Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, Keim P: Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. J Clin Microbiol. 2007, 45: 47-53. 10.1128\/JCM.01233-06.","journal-title":"J Clin Microbiol"},{"key":"5981_CR7","doi-asserted-by":"publisher","first-page":"e4813","DOI":"10.1371\/journal.pone.0004813","volume":"4","author":"LJ Kenefic","year":"2009","unstructured":"Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Ravel J, Hoffmaster AR, Trim CP, Chung WK, Beaudry JA, Foster JT, Mead JI, Keim P: Pre-Columbian origins for North American anthrax. PLoS One. 2009, 4: e4813-10.1371\/journal.pone.0004813.","journal-title":"PLoS One"},{"key":"5981_CR8","doi-asserted-by":"publisher","first-page":"e32866","DOI":"10.1371\/journal.pone.0032866","volume":"7","author":"DN Birdsell","year":"2012","unstructured":"Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, Keim PS: Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS One. 2012, 7: e32866-10.1371\/journal.pone.0032866.","journal-title":"PLoS One"},{"key":"5981_CR9","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1016\/S0399-077X(01)80066-4","volume":"31","author":"J Vaissaire","year":"2001","unstructured":"Vaissaire J, Mock M, Le Doujet C, Levy M: Le charbon bact\u00e9ridien. Epid\u00e9miologie de la maladie en France. M\u00e9d Mal Infect. 2001, 31: 257-271.","journal-title":"M\u00e9d Mal Infect"},{"key":"5981_CR10","first-page":"17","volume":"38","author":"N Madani","year":"2010","unstructured":"Madani N, Mendy C, Moutou F, Garin-Bastuji B: La fi\u00e8vre charbonneuse en France. Episodes de l'\u00e9t\u00e9 2009 et foyers enregistr\u00e9s sur la derni\u00e8re d\u00e9cennie (1999\u20132009). Bulletin \u00e9pid\u00e9miologique. 2010, 38: 17-19.","journal-title":"Bulletin \u00e9pid\u00e9miologique"},{"key":"5981_CR11","doi-asserted-by":"publisher","first-page":"4286","DOI":"10.1128\/JCM.05439-11","volume":"49","author":"S Derzelle","year":"2011","unstructured":"Derzelle S, Laroche S, Le Fleche P, Hauck Y, Thierry S, Vergnaud G, Madani N: Characterization of genetic diversity of Bacillus anthracis in France by using high-resolution melting assays and multilocus variable-number tandem-repeat analysis. J Clin Microbiol. 2011, 49: 4286-4292. 10.1128\/JCM.05439-11.","journal-title":"J Clin Microbiol"},{"key":"5981_CR12","unstructured":"NCBI. http:\/\/www.ncbi.nlm.nih.gov\/,"},{"key":"5981_CR13","doi-asserted-by":"publisher","first-page":"1010","DOI":"10.1016\/j.meegid.2009.05.014","volume":"9","author":"T Pearson","year":"2009","unstructured":"Pearson T, Okinaka RT, Foster JT, Keim P: Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infect Genet Evol. 2009, 9: 1010-1019. 10.1016\/j.meegid.2009.05.014.","journal-title":"Infect Genet Evol"},{"key":"5981_CR14","doi-asserted-by":"crossref","first-page":"3780","DOI":"10.1128\/JCM.38.10.3780-3784.2000","volume":"38","author":"KL Smith","year":"2000","unstructured":"Smith KL, DeVos V, Bryden H, Price LB, Hugh-Jones ME, Keim P: Bacillus anthracis diversity in Kruger National Park. J Clin Microbiol. 2000, 38: 3780-3784.","journal-title":"J Clin Microbiol"},{"key":"5981_CR15","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1186\/1471-2180-9-71","volume":"9","author":"TS Simonson","year":"2009","unstructured":"Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, Keim P: Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol. 2009, 9: 71-10.1186\/1471-2180-9-71.","journal-title":"BMC Microbiol"},{"key":"5981_CR16","first-page":"1","volume":"32","author":"D Calavas","year":"2009","unstructured":"Calavas D, Sala C, Vaissaire J, Cond\u00e9 J, Thien-Aubert H, Hessemann M, Woronoff-Rhen N: Retour d'exp\u00e9rience sur un \u00e9pisode de fi\u00e8vre charbonneuse chez les bovins dans le Doubs au cours de l'\u00e9t\u00e9 2008. Bulletin \u00e9pid\u00e9miologique. 2009, 32: 1-7.","journal-title":"Bulletin \u00e9pid\u00e9miologique"},{"key":"5981_CR17","unstructured":"IMAGIF. http:\/\/www.imagif.cnrs.fr,"},{"key":"5981_CR18","doi-asserted-by":"publisher","first-page":"451","DOI":"10.1146\/annurev.micro.091208.073255","volume":"63","author":"AB Kolsto","year":"2009","unstructured":"Kolsto AB, Tourasse NJ, Okstad OA: What sets Bacillus anthracis apart from other Bacillus species?. Annu Rev Microbiol. 2009, 63: 451-476. 10.1146\/annurev.micro.091208.073255.","journal-title":"Annu Rev Microbiol"},{"key":"5981_CR19","unstructured":"Primer 3+ software. http:\/\/www.bioinformatics.nl\/cgi-bin\/primer3plus\/primer3plus.cgi\/,"}],"container-title":["BMC Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2164-15-288.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,2]],"date-time":"2021-09-02T03:26:23Z","timestamp":1630553183000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcgenomics.biomedcentral.com\/articles\/10.1186\/1471-2164-15-288"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,4,16]]},"references-count":19,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2014,12]]}},"alternative-id":["5981"],"URL":"https:\/\/doi.org\/10.1186\/1471-2164-15-288","relation":{},"ISSN":["1471-2164"],"issn-type":[{"value":"1471-2164","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,4,16]]},"assertion":[{"value":"21 November 2013","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"9 April 2014","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 April 2014","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"288"}}