{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,10]],"date-time":"2025-10-10T12:52:46Z","timestamp":1760100766294},"reference-count":61,"publisher":"Springer Science and Business Media LLC","issue":"S2","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Genomics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/1471-2164-16-s2-s11","type":"journal-article","created":{"date-parts":[[2015,6,18]],"date-time":"2015-06-18T10:00:08Z","timestamp":1434621608000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships"],"prefix":"10.1186","volume":"16","author":[{"given":"Renhua","family":"Song","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qian","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tao","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jinyan","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,1,21]]},"reference":[{"issue":"5740","key":"6963_CR1","doi-asserted-by":"publisher","first-page":"1577","DOI":"10.1126\/science.1113329","volume":"309","author":"CL Jopling","year":"2005","unstructured":"Jopling CL, Yi M, Lancaster AM, Lemon SM, Sarnow P: Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science. 2005, 309 (5740): 1577-1581. 10.1126\/science.1113329.","journal-title":"Science"},{"issue":"11","key":"6963_CR2","doi-asserted-by":"publisher","first-page":"5090","DOI":"10.1128\/JVI.75.11.5090-5098.2001","volume":"75","author":"Y He","year":"2001","unstructured":"He Y, Tan SL, Tareen SU, Vijaysri S, Langland JO, Jacobs BL, Katze MG: Regulation of mRNA translation and cellular signaling by hepatitis C virus nonstructural protein NS5A. Journal of Virology. 2001, 75 (11): 5090-5098. 10.1128\/JVI.75.11.5090-5098.2001.","journal-title":"Journal of Virology"},{"issue":"7209","key":"6963_CR3","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1038\/nature07242","volume":"455","author":"D Baek","year":"2008","unstructured":"Baek D, Vill\u00e9n J, Shin C, Camargo FD, Gygi SP, Bartel DP: The impact of microRNAs on protein output. Nature. 2008, 455 (7209): 64-71. 10.1038\/nature07242.","journal-title":"Nature"},{"issue":"2","key":"6963_CR4","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1016\/S0092-8674(04)00045-5","volume":"116","author":"DP Bartel","year":"2004","unstructured":"Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004, 116 (2): 281-297. 10.1016\/S0092-8674(04)00045-5.","journal-title":"Cell"},{"key":"6963_CR5","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1016\/j.cell.2004.12.035","volume":"120","author":"BP Lewis","year":"2005","unstructured":"Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005, 120: 15-20. 10.1016\/j.cell.2004.12.035.","journal-title":"Cell"},{"issue":"suppl 2","key":"6963_CR6","doi-asserted-by":"publisher","first-page":"ii93","DOI":"10.1093\/bioinformatics\/bti1116","volume":"21","author":"S Yoon","year":"2005","unstructured":"Yoon S, De Micheli G: Prediction of regulatory modules comprising microRNAs and target genes. Bioinformatics. 2005, 21 (suppl 2): ii93-ii100.","journal-title":"Bioinformatics"},{"issue":"9","key":"6963_CR7","doi-asserted-by":"publisher","first-page":"1141","DOI":"10.1093\/bioinformatics\/btm045","volume":"23","author":"JG Joung","year":"2007","unstructured":"Joung JG, Hwang KB, Nam JW, Kim SJ, Zhang BT: Discovery of microRNA-mRNA modules via population-based probabilistic learning. Bioinformatics. 2007, 23 (9): 1141-1147. 10.1093\/bioinformatics\/btm045.","journal-title":"Bioinformatics"},{"issue":"3-4","key":"6963_CR8","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1089\/106652700750050961","volume":"7","author":"N Friedman","year":"2000","unstructured":"Friedman N, Linial M, Nachman I, Pe'er D: Using Bayesian networks to analyze expression data. Journal of Computational Biology. 2000, 7 (3-4): 601-620. 10.1089\/106652700750050961.","journal-title":"Journal of Computational Biology"},{"issue":"4","key":"6963_CR9","doi-asserted-by":"publisher","first-page":"685","DOI":"10.1016\/j.jbi.2009.01.005","volume":"42","author":"B Liu","year":"2009","unstructured":"Liu B, Li J, Tsykin A: Discovery of functional miRNA-mRNA regulatory modules with computational methods. Journal of Biomedical Informatics. 2009, 42 (4): 685-10.1016\/j.jbi.2009.01.005.","journal-title":"Journal of Biomedical Informatics"},{"issue":"7027","key":"6963_CR10","doi-asserted-by":"publisher","first-page":"769","DOI":"10.1038\/nature03315","volume":"433","author":"LP Lim","year":"2005","unstructured":"Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, Castle J, Bartel DP, Linsley PS, Johnson JM: Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature. 2005, 433 (7027): 769-773. 10.1038\/nature03315.","journal-title":"Nature"},{"issue":"5","key":"6963_CR11","doi-asserted-by":"publisher","first-page":"1608","DOI":"10.1073\/pnas.0707594105","volume":"105","author":"RF Place","year":"2008","unstructured":"Place RF, Li LC, Pookot D, Noonan EJ, Dahiya R: MicroRNA-373 induces expression of genes with complementary promoter sequences. Proceedings of the National Academy of Sciences. 2008, 105 (5): 1608-1613. 10.1073\/pnas.0707594105.","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"4","key":"6963_CR12","doi-asserted-by":"publisher","first-page":"460","DOI":"10.1016\/j.molcel.2008.05.001","volume":"30","author":"UA \u00d8rom","year":"2008","unstructured":"\u00d8rom UA, Nielsen FC, Lund AH: MicroRNA-10a binds the 5' UTR of ribosomal protein mRNAs and enhances their translation. Molecular cell. 2008, 30 (4): 460-471. 10.1016\/j.molcel.2008.05.001.","journal-title":"Molecular cell"},{"issue":"2","key":"6963_CR13","doi-asserted-by":"publisher","first-page":"e16915","DOI":"10.1371\/journal.pone.0016915","volume":"6","author":"E Enerly","year":"2011","unstructured":"Enerly E, Steinfeld I, Kleivi K, Leivonen SK, Aure MR, Russnes HG, R\u00f8nneberg JA, Johnsen H, Navon R, R\u00f8dland E, et al: miRNA-mRNA integrated analysis reveals roles for miRNAs in primary breast tumors. PloS One. 2011, 6 (2): e16915-10.1371\/journal.pone.0016915.","journal-title":"PloS One"},{"issue":"5","key":"6963_CR14","doi-asserted-by":"publisher","first-page":"2817","DOI":"10.1093\/nar\/gks1471","volume":"41","author":"PV Nazarov","year":"2013","unstructured":"Nazarov PV, Reinsbach SE, Muller A, Nicot N, Philippidou D, Vallar L, Kreis S: Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function. Nucleic Acids Research. 2013, 41 (5): 2817-2831. 10.1093\/nar\/gks1471.","journal-title":"Nucleic Acids Research"},{"issue":"13","key":"6963_CR15","doi-asserted-by":"publisher","first-page":"i401","DOI":"10.1093\/bioinformatics\/btr206","volume":"27","author":"S Zhang","year":"2011","unstructured":"Zhang S, Li Q, Liu J, Zhou XJ: A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinformatics. 2011, 27 (13): i401-i409. 10.1093\/bioinformatics\/btr206.","journal-title":"Bioinformatics"},{"key":"6963_CR16","doi-asserted-by":"publisher","first-page":"btu373","DOI":"10.1201\/b16589","volume-title":"Bioinformatics","author":"Y Li","year":"2014","unstructured":"Li Y, Liang C, Wong KC, Luo J, Zhang Z: Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. Bioinformatics. 2014, btu373-"},{"issue":"13","key":"6963_CR17","doi-asserted-by":"publisher","first-page":"i89","DOI":"10.1093\/bioinformatics\/btt231","volume":"29","author":"HS Le","year":"2013","unstructured":"Le HS, Bar-Joseph Z: Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation. Bioinformatics. 2013, 29 (13): i89-i97. 10.1093\/bioinformatics\/btt231.","journal-title":"Bioinformatics"},{"key":"6963_CR18","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1101\/gr.082701.108","volume":"19","author":"RC Friedman","year":"2009","unstructured":"Friedman RC, Farh KKH, Burge CB, Bartel DP: Most mammalian mRNAs are conserved targets of microRNAs. Genome Research. 2009, 19: 92-105.","journal-title":"Genome Research"},{"key":"6963_CR19","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1186\/1471-2164-10-373","volume":"10","author":"X Peng","year":"2009","unstructured":"Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD, Proll S, Katze MG: Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. BMC Genomics. 2009, 10: 373-10.1186\/1471-2164-10-373.","journal-title":"BMC Genomics"},{"key":"6963_CR20","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1186\/1471-2164-12-138","volume":"12","author":"V Jayaswal","year":"2011","unstructured":"Jayaswal V, Lutherborrow M, Ma D, Yang Y: Identification of microRNA-mRNA modules using microarray data. BMC Genomics. 2011, 12: 138-10.1186\/1471-2164-12-138.","journal-title":"BMC Genomics"},{"key":"6963_CR21","volume-title":"C4. 5: programs for machine learning","author":"JR Quinlan","year":"1993","unstructured":"Quinlan JR: C4. 5: programs for machine learning. 1993, Morgan Kaufmann, 1:"},{"key":"6963_CR22","volume-title":"Data mining: concepts and techniques","author":"J Han","year":"2006","unstructured":"Han J, Kamber M: Data mining: concepts and techniques. 2006, Morgan Kaufmann"},{"key":"6963_CR23","unstructured":"Weka 3.6 software package. [http:\/\/www.cs.waikato.ac.nz\/ml\/weka\/]"},{"issue":"5","key":"6963_CR24","doi-asserted-by":"publisher","first-page":"529","DOI":"10.1109\/34.391389","volume":"17","author":"H Breu","year":"1995","unstructured":"Breu H, Gil J, Kirkpatrick D, Werman M: Linear time Euclidean distance transform algorithms. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 1995, 17 (5): 529-533. 10.1109\/34.391389.","journal-title":"Pattern Analysis and Machine Intelligence, IEEE Transactions on"},{"key":"6963_CR25","volume-title":"Introduction to graph theory","author":"DB West","year":"2001","unstructured":"West DB: Introduction to graph theory. 2001, Prentice hall Englewood Cliffs, 2:"},{"issue":"4","key":"6963_CR26","doi-asserted-by":"crossref","first-page":"817","DOI":"10.3892\/ol.2012.810","volume":"4","author":"Y Katayama","year":"2012","unstructured":"Katayama Y, Maeda M, Miyaguchi K, Nemoto S, Yasen M, Tanaka S, Mizushima H, Fukuoka Y, Arii S, Tanaka H: Identification of pathogenesis-related microRNAs in hepatocellular carcinoma by expression profiling. Oncology Letters. 2012, 4 (4): 817-","journal-title":"Oncology Letters"},{"key":"6963_CR27","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1186\/1755-1536-5-12","volume":"5","author":"M Iizuka","year":"2012","unstructured":"Iizuka M, Ogawa T, Enomoto M, Motoyama H, Yoshizato K, Ikeda K, Kawada N: Induction of microRNA-214-5p in human and rodent liver fibrosis. Fibrogenesis Tissue Repair. 2012, 5: 12-10.1186\/1755-1536-5-12.","journal-title":"Fibrogenesis Tissue Repair"},{"issue":"2","key":"6963_CR28","doi-asserted-by":"publisher","first-page":"e55733","DOI":"10.1371\/journal.pone.0055733","volume":"8","author":"X Zhang","year":"2013","unstructured":"Zhang X, Daucher M, Armistead D, Russell R, Kottilil S: MicroRNA Expression Profiling in HCV-Infected Human Hepatoma Cells Identifies Potential Anti-Viral Targets Induced by Interferon-\u03b1. PLoS One. 2013, 8 (2): e55733-10.1371\/journal.pone.0055733.","journal-title":"PLoS One"},{"key":"6963_CR29","doi-asserted-by":"publisher","first-page":"159","DOI":"10.1042\/BSR20100112","volume":"31","author":"M Fukuda","year":"2011","unstructured":"Fukuda M: TBC proteins: GAPs for mammalian small GTPase Rab?. Bioscience Reports. 2011, 31: 159-168. 10.1042\/BSR20100112.","journal-title":"Bioscience Reports"},{"issue":"20","key":"6963_CR30","doi-asserted-by":"publisher","first-page":"11096","DOI":"10.1128\/JVI.01249-07","volume":"81","author":"EH Sklan","year":"2007","unstructured":"Sklan EH, Staschke K, Oakes TM, Elazar M, Winters M, Aroeti B, Danieli T, Glenn JS: A Rab-GAP TBC domain protein binds hepatitis C virus NS5A and mediates viral replication. Journal of Virology. 2007, 81 (20): 11096-11105. 10.1128\/JVI.01249-07.","journal-title":"Journal of Virology"},{"issue":"8","key":"6963_CR31","doi-asserted-by":"publisher","first-page":"e23937","DOI":"10.1371\/journal.pone.0023937","volume":"6","author":"S Cermelli","year":"2011","unstructured":"Cermelli S, Ruggieri A, Marrero JA, Ioannou GN, Beretta L: Circulating microRNAs in patients with chronic hepatitis C and non-alcoholic fatty liver disease. PLoS One. 2011, 6 (8): e23937-10.1371\/journal.pone.0023937.","journal-title":"PLoS One"},{"key":"6963_CR32","volume-title":"PhD thesis","author":"PJ Clark","year":"2012","unstructured":"Clark PJ: Translational genomics, transcriptomics and metabolomics analyses of the metabolic effects of chronic hepatitis C infection and their clinical implications. PhD thesis. 2012, The University of New South Wales"},{"issue":"7","key":"6963_CR33","doi-asserted-by":"publisher","first-page":"1243","DOI":"10.1016\/j.cell.2009.12.017","volume":"139","author":"AL Brass","year":"2009","unstructured":"Brass AL, Huang I, Benita Y, John SP, Krishnan MN, Feeley EM, Ryan BJ, Weyer JL, van der Weyden L, Fikrig E: The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell. 2009, 139 (7): 1243-1254. 10.1016\/j.cell.2009.12.017.","journal-title":"Cell"},{"issue":"3","key":"6963_CR34","doi-asserted-by":"publisher","first-page":"295","DOI":"10.1016\/S1499-3872(11)60049-0","volume":"10","author":"HY Xie","year":"2011","unstructured":"Xie HY, Cheng J, Xing CY, Wang JJ, Su R, Wei XY, Zhou L, Zheng SS: Evaluation of hepatitis B viral replication and proteomic analysis of HepG2. 2.15 cell line after knockdown of HBx. Hepatobiliary & Pancreatic Diseases International. 2011, 10 (3): 295-302. 10.1016\/S1499-3872(11)60049-0.","journal-title":"Hepatobiliary & Pancreatic Diseases International"},{"issue":"8","key":"6963_CR35","first-page":"1273","volume":"42","author":"CY Lu","year":"2013","unstructured":"Lu CY, Lin KY, Tien MT, Wu CT, Uen YH, Tseng TL: Frequent DNA methylation of MiR-129-2 and its potential clinical implication in hepatocellular carcinoma. Genes, Chromosomes and Cancer. 2013, 42 (8): 1273-1281.","journal-title":"Genes, Chromosomes and Cancer"},{"key":"6963_CR36","doi-asserted-by":"publisher","first-page":"19","DOI":"10.7150\/jca.3.19","volume":"3","author":"MA Abdalla","year":"2012","unstructured":"Abdalla MA, Haj-Ahmad Y: Promising candidate urinary microRNA biomarkers for the early detection of hepatocellular carcinoma among high-risk hepatitis C virus Egyptian patients. Journal of Cancer. 2012, 3: 19-","journal-title":"Journal of Cancer"},{"key":"6963_CR37","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.virol.2009.11.036","volume":"398","author":"X Liu","year":"2010","unstructured":"Liu X, Wang T, Wakita T, Yang W: Systematic identification of microRNA and messenger RNA profiles in hepatitis C virus-infected human hepatoma cells. Virology. 2010, 398: 57-67. 10.1016\/j.virol.2009.11.036.","journal-title":"Virology"},{"issue":"2","key":"6963_CR38","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1016\/j.antiviral.2010.08.008","volume":"88","author":"Gl Zhang","year":"2010","unstructured":"Zhang Gl, Li Yx, Zheng Sq, Liu M, Li X, Tang H: Suppression of hepatitis B virus replication by microRNA-199a-3p and microRNA-210. Antiviral Research. 2010, 88 (2): 169-175. 10.1016\/j.antiviral.2010.08.008.","journal-title":"Antiviral Research"},{"issue":"3","key":"6963_CR39","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1016\/j.clim.2012.12.013","volume":"146","author":"T Chen","year":"2013","unstructured":"Chen T, Zhu L, Zhou Y, Pi B, Liu X, Deng G, Zhang R, Wang Y, Wu Z, Han M: KCTD9 contributes to liver injury through NK cell activation during hepatitis B virus-induced acute-on-chronic liver failure. Clinical Immunology. 2013, 146 (3): 207-216. 10.1016\/j.clim.2012.12.013.","journal-title":"Clinical Immunology"},{"issue":"4","key":"6963_CR40","doi-asserted-by":"publisher","first-page":"1200","DOI":"10.1002\/hep.22169","volume":"47","author":"SA Lee","year":"2008","unstructured":"Lee SA, Ho C, Roy R, Kosinski C, Patil MA, Tward AD, Fridlyand J, Chen X: Integration of genomic analysis and in vivo transfection to identify sprouty 2 as a candidate tumor suppressor in liver cancer. Hepatology. 2008, 47 (4): 1200-1210.","journal-title":"Hepatology"},{"issue":"3","key":"6963_CR41","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1016\/j.jhep.2007.12.007","volume":"48","author":"J Lupberger","year":"2008","unstructured":"Lupberger J, Brino L, Baumert TF: RNAi-A powerful tool to unravel hepatitis C virus-host interactions within the infectious life cycle. Journal of Hepatology. 2008, 48 (3): 523-525. 10.1016\/j.jhep.2007.12.007.","journal-title":"Journal of Hepatology"},{"issue":"9","key":"6963_CR42","doi-asserted-by":"publisher","first-page":"e44206","DOI":"10.1371\/journal.pone.0044206","volume":"7","author":"H Xia","year":"2012","unstructured":"Xia H, Ooi LLP, Hui KM: miRNA-214 targets \u03b2-catenin pathway to suppress invasion, stem-like traits and recurrence of human hepatocellular carcinoma. PLoS One. 2012, 7 (9): e44206-10.1371\/journal.pone.0044206.","journal-title":"PLoS One"},{"issue":"9","key":"6963_CR43","doi-asserted-by":"publisher","first-page":"2588","DOI":"10.1158\/1078-0432.CCR-07-0666","volume":"14","author":"TS Wong","year":"2008","unstructured":"Wong TS, Liu XB, Wong BYH, Ng RWM, Yuen APW, Wei WI: Mature miR-184 as potential oncogenic microRNA of squamous cell carcinoma of tongue. Clinical Cancer Research. 2008, 14 (9): 2588-2592. 10.1158\/1078-0432.CCR-07-0666.","journal-title":"Clinical Cancer Research"},{"issue":"9","key":"6963_CR44","doi-asserted-by":"publisher","first-page":"1809","DOI":"10.4161\/cc.9.9.11535","volume":"9","author":"J Wu","year":"2010","unstructured":"Wu J, Qian J, Li C, Kwok L, Cheng F, Liu P, Perdomo C, Kotton D, Vaziri C, Anderlind C: miR-129 regulates cell proliferation by downregulating Cdk6 expression. Cell Cycle. 2010, 9 (9): 1809-1818. 10.4161\/cc.9.9.11535.","journal-title":"Cell Cycle"},{"issue":"16","key":"6963_CR45","doi-asserted-by":"publisher","first-page":"2591","DOI":"10.4161\/cc.7.16.6533","volume":"7","author":"D Lodygin","year":"2008","unstructured":"Lodygin D, Tarasov V, Epanchintsev A, Berking C, Knyazeva T, Korner H, Knyazev P, Diebold J, Hermeking H: Inactivation of miR-34a by aberrant CpG methylation in multiple types of cancer. Cell Cycle. 2008, 7 (16): 2591-2600. 10.4161\/cc.7.16.6533.","journal-title":"Cell Cycle"},{"key":"6963_CR46","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1016\/j.bbrc.2012.04.138","volume":"422","author":"Y Bian","year":"2012","unstructured":"Bian Y, Wang L, Lu H, Yang G, Zhang Z, Fu H, Lu X, Wei M, Sun J, Zhao Q: Downregulation of tumor suppressor QKI in gastric cancer and its implication in cancer prognosis. Biochemical and Biophysical Research Communications. 2012, 422: 187-193. 10.1016\/j.bbrc.2012.04.138.","journal-title":"Biochemical and Biophysical Research Communications"},{"issue":"2","key":"6963_CR47","doi-asserted-by":"publisher","first-page":"520","DOI":"10.1016\/j.bbrc.2007.11.179","volume":"366","author":"SY Liu","year":"2008","unstructured":"Liu SY, Chen YT, Tseng MY, Hung CC, Chiang WF, Chen HR, Shieh TY, Chen CH, Jou YS, Chen JYF: Involvement of microtubule-associated protein 2 (MAP2) in oral cancer cell motility: a novel biological function of MAP2 in non-neuronal cells. Biochemical and Biophysical Research Communications. 2008, 366 (2): 520-525. 10.1016\/j.bbrc.2007.11.179.","journal-title":"Biochemical and Biophysical Research Communications"},{"key":"6963_CR48","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-62015-7","volume-title":"Markov chains","author":"KL Chung","year":"1967","unstructured":"Chung KL: Markov chains. 1967, Springer"},{"key":"6963_CR49","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1093\/nar\/gkq768","volume":"39","author":"RM Mar\u00edn","year":"2011","unstructured":"Mar\u00edn RM, Van\u00ed\u010dek J: Efficient use of accessibility in microRNA target prediction. Nucleic Acids Research. 2011, 39: 19-29. 10.1093\/nar\/gkq768.","journal-title":"Nucleic Acids Research"},{"issue":"5","key":"6963_CR50","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1038\/nrn812","volume":"3","author":"MS Airaksinen","year":"2002","unstructured":"Airaksinen MS, Saarma M: The GDNF family: signalling, biological functions and therapeutic value. Nature Reviews Neuroscience. 2002, 3 (5): 383-394. 10.1038\/nrn812.","journal-title":"Nature Reviews Neuroscience"},{"issue":"6634","key":"6963_CR51","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1038\/42729","volume":"387","author":"A Buj-Bello","year":"1997","unstructured":"Buj-Bello A, Adu J, Pinon L, Horton A, Thompson J, Rosenthal A, Chinchetru M, Buchman VL, Davies AM: Neurturin responsiveness requires a GPI-linked receptor and the Ret receptor tyrosine kinase. Nature. 1997, 387 (6634): 721-10.1038\/42729.","journal-title":"Nature"},{"issue":"4","key":"6963_CR52","doi-asserted-by":"publisher","first-page":"e13","DOI":"10.1016\/j.biopsych.2012.02.036","volume":"72","author":"BC F\u00e1bregas","year":"2012","unstructured":"F\u00e1bregas BC, de Miranda AS, Barbosa IG, Moura AS, Carmo RA, Teixeira AL: Brain-derived neurotrophic factor in patients with chronic hepatitis C: beyond neurotrophic support. Biological Psychiatry. 2012, 72 (4): e13-e14. 10.1016\/j.biopsych.2012.02.036.","journal-title":"Biological Psychiatry"},{"issue":"6","key":"6963_CR53","doi-asserted-by":"publisher","first-page":"1517","DOI":"10.1242\/jcs.122895","volume":"126","author":"SW Shan","year":"2013","unstructured":"Shan SW, Fang L, Shatseva T, Rutnam ZJ, Yang X, Du W, Lu WY, Xuan JW, Deng Z, Yang BB: Mature miR-17-5p and passenger miR-17-3p induce hepatocellular carcinoma by targeting PTEN, GalNT7 and vimentin in different signal pathways. Journal of Cell Science. 2013, 126 (6): 1517-1530. 10.1242\/jcs.122895.","journal-title":"Journal of Cell Science"},{"issue":"S1","key":"6963_CR54","doi-asserted-by":"publisher","first-page":"148","DOI":"10.1002\/mc.22062","volume":"52","author":"L Liu","year":"2013","unstructured":"Liu L, An J, Liu J, Wen J, Zhai X, Liu Y, Pan S, Jiang J, Wen Y, Liu Z, et al: Potentially functional genetic variants in microRNA processing genes and risk of HBV-related hepatocellular carcinoma. Molecular Carcinogenesis. 2013, 52 (S1): 148-154. 10.1002\/mc.22062.","journal-title":"Molecular Carcinogenesis"},{"issue":"5","key":"6963_CR55","doi-asserted-by":"publisher","first-page":"607","DOI":"10.1002\/lt.20118","volume":"10","author":"VR Mas","year":"2004","unstructured":"Mas VR, Maluf DG, Stravitz R, Dumur CI, Clark B, Rodgers C, Ferreira-Gonzalez A, Fisher RA: Hepatocellular carcinoma in HCV-infected patients awaiting liver transplantation: Genes involved in tumor progression. Liver Transplantation. 2004, 10 (5): 607-620. 10.1002\/lt.20118.","journal-title":"Liver Transplantation"},{"issue":"8","key":"6963_CR56","doi-asserted-by":"publisher","first-page":"1198","DOI":"10.1261\/rna.563707","volume":"13","author":"G Easow","year":"2007","unstructured":"Easow G, Teleman AA, Cohen SM: Isolation of microRNA targets by miRNP immunopurification. RNA. 2007, 13 (8): 1198-1204. 10.1261\/rna.563707.","journal-title":"RNA"},{"issue":"3","key":"6963_CR57","doi-asserted-by":"publisher","first-page":"976","DOI":"10.1158\/0008-5472.CAN-06-3667","volume":"67","author":"Y Chen","year":"2007","unstructured":"Chen Y, Stallings RL: Differential patterns of microRNA expression in neuroblastoma are correlated with prognosis, differentiation, and apoptosis. Cancer Research. 2007, 67 (3): 976-983. 10.1158\/0008-5472.CAN-06-3667.","journal-title":"Cancer Research"},{"key":"6963_CR58","unstructured":"miRTarbase database. [http:\/\/mirtarbase.mbc.nctu.edu.tw\/php\/search.php]"},{"issue":"D1","key":"6963_CR59","doi-asserted-by":"publisher","first-page":"D78","DOI":"10.1093\/nar\/gkt1266","volume":"42","author":"SD Hsu","year":"2014","unstructured":"Hsu SD, Tseng YT, Shrestha S, Lin YL, Khaleel A, Chou CH, Chu CF, Huang HY, Lin CM, Ho SY, et al: miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Research. 2014, 42 (D1): D78-D85. 10.1093\/nar\/gkt1266.","journal-title":"Nucleic Acids Research"},{"key":"6963_CR60","unstructured":"starBase database. [http:\/\/starbase.sysu.edu.cn\/]"},{"issue":"D1","key":"6963_CR61","doi-asserted-by":"publisher","first-page":"D92","DOI":"10.1093\/nar\/gkt1248","volume":"42","author":"JH Li","year":"2014","unstructured":"Li JH, Liu S, Zhou H, Qu LH, Yang JH: starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Research. 2014, 42 (D1): D92-D97. 10.1093\/nar\/gkt1248.","journal-title":"Nucleic Acids Research"}],"container-title":["BMC Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2164-16-S2-S11.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,2]],"date-time":"2021-09-02T19:34:36Z","timestamp":1630611276000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcgenomics.biomedcentral.com\/articles\/10.1186\/1471-2164-16-S2-S11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,1,21]]},"references-count":61,"journal-issue":{"issue":"S2","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["6963"],"URL":"https:\/\/doi.org\/10.1186\/1471-2164-16-s2-s11","relation":{},"ISSN":["1471-2164"],"issn-type":[{"value":"1471-2164","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,1,21]]},"assertion":[{"value":"21 January 2015","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"S11"}}