{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,3,13]],"date-time":"2024-03-13T19:12:03Z","timestamp":1710357123167},"reference-count":27,"publisher":"Springer Science and Business Media LLC","issue":"S1","license":[{"start":{"date-parts":[[2012,4,30]],"date-time":"2012-04-30T00:00:00Z","timestamp":1335744000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Med Inform Decis Mak"],"published-print":{"date-parts":[[2012,12]]},"DOI":"10.1186\/1472-6947-12-s1-s5","type":"journal-article","created":{"date-parts":[[2012,4,30]],"date-time":"2012-04-30T10:19:50Z","timestamp":1335781190000},"source":"Crossref","is-referenced-by-count":4,"title":["Semantic text mining support for lignocellulose research"],"prefix":"10.1186","volume":"12","author":[{"given":"Marie-Jean","family":"Meurs","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Caitlin","family":"Murphy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ingo","family":"Morgenstern","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Greg","family":"Butler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Justin","family":"Powlowski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adrian","family":"Tsang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ren\u00e9","family":"Witte","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2012,4,30]]},"reference":[{"issue":"Suppl 1","key":"478_CR1","doi-asserted-by":"publisher","first-page":"S108","DOI":"10.1016\/j.apenergy.2009.04.036","volume":"86","author":"A Demirbas","year":"2009","unstructured":"Demirbas A: Political, economic and environmental impacts of biofuels: a review. Applied Energy. 2009, 86 (Suppl 1): S108-S117.","journal-title":"Applied Energy"},{"key":"478_CR2","volume-title":"Tech Rep","author":"S Bringezu","year":"2009","unstructured":"Bringezu S, Sch\u00fctz H, O'Brien M, Kauppi L, Howarth RW, McNelly J: Towards sustainable production and use of resources: assessing biofuels. Tech Rep. 2009, United Nations Environment Programme"},{"key":"478_CR3","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1007\/s10570-009-9307-z","volume":"16","author":"I Jovanovic","year":"2009","unstructured":"Jovanovic I, Magnuson J, Collart F, Robbertse B, Adney W, Himmel M, Baker S: Fungal glycoside hydrolases for saccharification of lignocellulose: outlook for new discoveries fueled by genomics and functional studies. Cellulose. 2009, 16: 687-697. 10.1007\/s10570-009-9307-z.","journal-title":"Cellulose"},{"issue":"Suppl 1","key":"478_CR4","doi-asserted-by":"publisher","first-page":"D5","DOI":"10.1093\/nar\/gkn741","volume":"38","author":"EW Sayers","year":"2009","unstructured":"Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, John Wilbur W, Yaschenko E, Ye J: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2009, 38 (Suppl 1): D5-D16.","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"478_CR5","doi-asserted-by":"publisher","first-page":"D670","DOI":"10.1093\/nar\/gkq1089","volume":"39","author":"M Scheer","year":"2011","unstructured":"Scheer M, Grote A, Chang A, Schomburg I, Munaretto C, Rother M, S\u00f6hngen C, Stelzer M, Thiele J, Schomburg D: BRENDA, the enzyme information system in 2011. Nucleic Acids Res. 2011, 39 (Database issue): D670-D676.","journal-title":"Nucleic Acids Res"},{"key":"478_CR6","volume-title":"Text Mining for Biology and Biomedicine","author":"S Ananiadou","year":"2005","unstructured":"Ananiadou S, McNaught J: Text Mining for Biology and Biomedicine. 2005, Norwood, MA, USA: Artech House, Inc"},{"key":"478_CR7","volume-title":"Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences","year":"2007","unstructured":"Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. Edited by: Baker CJO, Cheung KH. 2007, Springer"},{"key":"478_CR8","doi-asserted-by":"crossref","unstructured":"Shadbolt N, Berners-Lee T, Hall W: The semantic web revisited. IEEE Intell Syst. 21 (3): 96-101.","DOI":"10.1109\/MIS.2006.62"},{"issue":"11","key":"478_CR9","doi-asserted-by":"publisher","first-page":"e309","DOI":"10.1371\/journal.pbio.0020309","volume":"2","author":"HM M\u00fcller","year":"2004","unstructured":"M\u00fcller HM, Kenny EE, Sternberg PW: Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol. 2004, 2 (11): e309-10.1371\/journal.pbio.0020309.","journal-title":"PLoS Biol"},{"issue":"Web Server issu","key":"478_CR10","doi-asserted-by":"publisher","first-page":"W783","DOI":"10.1093\/nar\/gki470","volume":"33","author":"A Doms","year":"2005","unstructured":"Doms A, Schroeder M: GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Res. 2005, 33 (Web Server issue): W783-W786.","journal-title":"Nucleic Acids Res"},{"key":"478_CR11","doi-asserted-by":"publisher","first-page":"664","DOI":"10.1038\/ng0704-664","volume":"36","author":"R Hoffmann","year":"2004","unstructured":"Hoffmann R, Valencia A: A gene network for navigating the literature. Nat Genet. 2004, 36: 664-10.1038\/ng0704-664.","journal-title":"Nat Genet"},{"key":"478_CR12","doi-asserted-by":"publisher","first-page":"3206","DOI":"10.1093\/bioinformatics\/bth386","volume":"20","author":"DC Bernard","year":"2004","unstructured":"Bernard DC, Buxton BF, Langdon WB, Jones DT: BioRAT: extracting biological information from full-length papers. Bioinformatics. 2004, 20: 3206-3213. 10.1093\/bioinformatics\/bth386.","journal-title":"Bioinformatics"},{"key":"478_CR13","first-page":"420","volume-title":"Knowledge-Based and Intelligent Information and Engineering Systems, Volume 6279 of Lecture Notes in Computer Science","author":"C G\u00f6rg","year":"2010","unstructured":"G\u00f6rg C, Tipney H, Verspoor K, Baumgartner W, Cohen K, Stasko J, Hunter L: Visualization and language processing for supporting analysis across the biomedical literature. Knowledge-Based and Intelligent Information and Engineering Systems, Volume 6279 of Lecture Notes in Computer Science. Edited by: Setchi R, Jordanov I, Howlett R, Jain L. 2010, Springer Berlin\/Heidelberg, 420-429."},{"key":"478_CR14","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1007\/978-0-387-48438-9_14","volume-title":"Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences","author":"R Witte","year":"2007","unstructured":"Witte R, Kappler T, Baker CJO: Ontology design for biomedical text mining. Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. Edited by: Baker CJO, Cheung KH. 2007, Springer, 281-313."},{"key":"478_CR15","doi-asserted-by":"publisher","first-page":"508","DOI":"10.1038\/nbt0609-508","volume":"27","author":"E Pafilis","year":"2009","unstructured":"Pafilis E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, Schneider R: Reflect: augmented browsing for the life scientist. Nat Biotechnol. 2009, 27: 508-510. 10.1038\/nbt0609-508.","journal-title":"Nat Biotechnol"},{"key":"478_CR16","doi-asserted-by":"publisher","first-page":"bar020","DOI":"10.1093\/database\/bar020","volume":"2011","author":"C Murphy","year":"2011","unstructured":"Murphy C, Powlowski J, Wu M, Butler G, Tsang A: Curation of characterized glycoside hydrolases of fungal origin. Database (Oxford). 2011, 2011: bar020-10.1093\/database\/bar020.","journal-title":"Database (Oxford)"},{"key":"478_CR17","volume-title":"The NCBI Handbook","author":"S Federhen","year":"2003","unstructured":"Federhen S: The Taxonomy Project. The NCBI Handbook. Edited by: McEntyre J, Ostell J. 2003, National Library of Medicine (US), National Center for Biotechnology Information"},{"issue":"Database issue","key":"478_CR18","doi-asserted-by":"publisher","first-page":"D169","DOI":"10.1093\/nar\/gkn664","volume":"37","author":"UniProt Consortium","year":"2009","unstructured":"UniProt Consortium: The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res. 2009, 37 (Database issue): D169-D174.","journal-title":"Nucleic Acids Res"},{"key":"478_CR19","first-page":"360","volume-title":"3rd Asian Semantic Web Conference (ASWC 2008), Volume 5367 of LNCS, Bangkok, Thailand","author":"R Witte","year":"2009","unstructured":"Witte R, Gitzinger T: Semantic assistants - user-centric natural language processing services for desktop clients. 3rd Asian Semantic Web Conference (ASWC 2008), Volume 5367 of LNCS, Bangkok, Thailand. 2009, Springer, 360-374."},{"key":"478_CR20","volume-title":"Text Processing with GATE (Version 6)","author":"H Cunningham","year":"2011","unstructured":"Cunningham H, Maynard D, Bontcheva K, Tablan V, Aswani N, Roberts I, Gorrell G, Funk A, Roberts A, Damljanovic D, Heitz T, Greenwood MA, Saggion H, Petrak J, Li Y, Peters W: Text Processing with GATE (Version 6). 2011, University of Sheffield, Department of Computer Science, [\n                    http:\/\/tinyurl.com\/gatebook\n                    \n                  ]"},{"key":"478_CR21","first-page":"3845","volume-title":"The Seventh International Conference on Language Resources and Evaluation (LREC 2010)","author":"R Witte","year":"2010","unstructured":"Witte R, Khamis N, Rilling J: Flexible ontology population from text: the OwlExporter. The Seventh International Conference on Language Resources and Evaluation (LREC 2010). 2010, Valletta, Malta: ELRA, 3845-3850."},{"issue":"19","key":"478_CR22","doi-asserted-by":"publisher","first-page":"2721","DOI":"10.1093\/bioinformatics\/btr452","volume":"27","author":"N Naderi","year":"2011","unstructured":"Naderi N, Kappler T, Baker CJ, Witte R: OrganismTagger: detection, normalization, and grounding of organism entities in biomedical documents. Bioinformatics. 2011, 27 (19): 2721-2729. 10.1093\/bioinformatics\/btr452.","journal-title":"Bioinformatics"},{"key":"478_CR23","volume-title":"Enzyme Nomenclature","author":"International Union of Biochemistry and Molecular Biology","year":"1992","unstructured":"International Union of Biochemistry and Molecular Biology: Enzyme Nomenclature. 1992, San Diego, California: Academic Press"},{"issue":"12","key":"478_CR24","doi-asserted-by":"publisher","first-page":"1871","DOI":"10.1016\/j.procbio.2003.09.013","volume":"39","author":"BC Saha","year":"2004","unstructured":"Saha BC: Production, purification and properties of endoglucanase from a newly isolated strain of Mucor circinelloides. Process Biochemistry. 2004, 39 (12): 1871-1876. 10.1016\/j.procbio.2003.09.013.","journal-title":"Process Biochemistry"},{"key":"478_CR25","first-page":"20","volume-title":"New Challenges for NLP Frameworks","author":"K Bontcheva","year":"2010","unstructured":"Bontcheva K, Cunningham H, Roberts I, Tablan V: Web-based collaborative corpus annotation: requirements and a framework implementation. New Challenges for NLP Frameworks. 2010, Valletta, Malta: ELRA, 20-27."},{"issue":"9","key":"478_CR26","doi-asserted-by":"publisher","first-page":"1246","DOI":"10.1093\/bioinformatics\/btq129","volume":"26","author":"N Okazaki","year":"2010","unstructured":"Okazaki N, Ananiadou S, Tsujii J: Building a high-quality sense inventory for improved abbreviation disambiguation. Bioinformatics. 2010, 26 (9): 1246-1253. 10.1093\/bioinformatics\/btq129.","journal-title":"Bioinformatics"},{"key":"478_CR27","doi-asserted-by":"publisher","first-page":"bar013","DOI":"10.1093\/database\/bar013","volume":"2011","author":"Y Yamamoto","year":"2011","unstructured":"Yamamoto Y, Yamaguchi A, Bono H, Takagi T: Allie: a database and a search service of abbreviations and long forms. Database (Oxford). 2011, 2011: bar013-10.1093\/database\/bar013.","journal-title":"Database (Oxford)"}],"container-title":["BMC Medical Informatics and Decision Making"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1472-6947-12-S1-S5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1472-6947-12-S1-S5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1472-6947-12-S1-S5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T15:41:54Z","timestamp":1548171714000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcmedinformdecismak.biomedcentral.com\/articles\/10.1186\/1472-6947-12-S1-S5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,4,30]]},"references-count":27,"journal-issue":{"issue":"S1","published-print":{"date-parts":[[2012,12]]}},"alternative-id":["478"],"URL":"https:\/\/doi.org\/10.1186\/1472-6947-12-s1-s5","relation":{},"ISSN":["1472-6947"],"issn-type":[{"value":"1472-6947","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,4,30]]},"article-number":"S5"}}