{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,25]],"date-time":"2026-01-25T03:18:39Z","timestamp":1769311119493,"version":"3.49.0"},"reference-count":25,"publisher":"Springer Science and Business Media LLC","issue":"S1","license":[{"start":{"date-parts":[[2015,5,20]],"date-time":"2015-05-20T00:00:00Z","timestamp":1432080000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Med Inform Decis Mak"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/1472-6947-15-s1-s9","type":"journal-article","created":{"date-parts":[[2015,6,18]],"date-time":"2015-06-18T10:33:50Z","timestamp":1434623630000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":47,"title":["Developing a hybrid dictionary-based bio-entity recognition technique"],"prefix":"10.1186","volume":"15","author":[{"given":"Min","family":"Song","sequence":"first","affiliation":[]},{"given":"Hwanjo","family":"Yu","sequence":"additional","affiliation":[]},{"given":"Wook-Shin","family":"Han","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2015,5,20]]},"reference":[{"issue":"Suppl 1","key":"908_CR1","doi-asserted-by":"publisher","first-page":"i266","DOI":"10.1093\/bioinformatics\/bti1006","volume":"21","author":"Z Kou","year":"2005","unstructured":"Kou Z, Cohen W, Murphy R: High-recall protein entity recognition using a dictionary. Bioinformatics. 2005, 21 (Suppl 1): i266-i273. 10.1093\/bioinformatics\/bti1006. doi:10.1093\/bioinformatics\/bti1006","journal-title":"Bioinformatics"},{"issue":"8","key":"908_CR2","doi-asserted-by":"publisher","first-page":"1088","DOI":"10.1109\/TKDE.2005.132","volume":"17","author":"JH Chiang","year":"2005","unstructured":"Chiang JH, Yu HC: Literature extraction of protein functions using sentence pattern mining. IEEE Transactions on Knowledge and Data Engineering. 2005, 17 (8): 1088-1098.","journal-title":"IEEE Transactions on Knowledge and Data Engineering"},{"key":"908_CR3","first-page":"427","volume-title":"Pac Symp Biocomput","author":"M Narayanaswamy","year":"2003","unstructured":"Narayanaswamy M, et al: A biological named entity recognizer. Pac Symp Biocomput. 2003, 427-438."},{"issue":"1","key":"908_CR4","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1075\/term.10.1.04nen","volume":"10","author":"G Nenadic","year":"2004","unstructured":"Nenadic G, Spasic I, Ananiadou S: Automatic Discovery of Term Similarities Using Pattern Mining. Intl J of Terminology. 2004, 10 (1): 55-80. 10.1075\/term.10.1.04nen.","journal-title":"Intl J of Terminology"},{"issue":"10","key":"908_CR5","doi-asserted-by":"publisher","first-page":"762","DOI":"10.1145\/359842.359859","volume":"20","author":"Boyer RS","year":"1977","unstructured":"RS Boyer: A Fast String Searching Algorithm. Communications of the Association for Computing Machinery. 1977, 20 (10): 762-772. 10.1145\/359842.359859.","journal-title":"Communications of the Association for Computing Machinery"},{"key":"908_CR6","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1093\/bioinformatics\/17.2.155","volume":"17","author":"T Ono","year":"2001","unstructured":"Ono T, et al: Automated extraction of information on protein-protein interactions from the biological literature. Bioinformatics. 2001, 17: 155-161. 10.1093\/bioinformatics\/17.2.155.","journal-title":"Bioinformatics"},{"key":"908_CR7","volume-title":"International Conference on Bioinformatics and Computational Biology","author":"A Rudniy","year":"2012","unstructured":"Rudniy A, Geller J, Song M: Histogram Difference String Distance for Enhancing Ontology Integration in Bioinformatics. International Conference on Bioinformatics and Computational Biology. 2012, Las Vegas, NV"},{"key":"908_CR8","volume-title":"Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Application","author":"JD Kim","year":"2004","unstructured":"Kim JD, Ohta T, Tsuruoka Y, Tateisi Y, Collier N: Introduction to the bio-entity recognition task at JNLPBA. Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Application. 2004"},{"key":"908_CR9","volume-title":"Proc Human Language Technology Conference","author":"Tomoko Ohta","year":"2002","unstructured":"Ohta Tomoko, Tateisi Y, Kim J, Mima H, Tsujii J: The GENIA Corpus: An Annotated Research Abstract Corpus in Molecular Biology Domain. Proc Human Language Technology Conference. 2002"},{"key":"908_CR10","volume-title":"Proc Conference on Computational Linguistics, Joint Workshop on Natural Language Processing in Biomedicine and its Applications","author":"Burr Settles","year":"2004","unstructured":"Settles Burr: Biomedical Named Entity Recognition Using Conditional Random Fields and Rich Feature Sets. Proc Conference on Computational Linguistics, Joint Workshop on Natural Language Processing in Biomedicine and its Applications. 2004"},{"key":"908_CR11","volume-title":"Proc Conference of Association for Computational Linguistics Natural Language Processing in Biomedicine","author":"Dan Shen","year":"2003","unstructured":"Shen Dan, Zhang J, Zhou G, Su J, Tan CL: Effective Adaptation of a Hidden Markov Model-based Named Entity Recognizer for Biomedical Domain. Proc Conference of Association for Computational Linguistics Natural Language Processing in Biomedicine. 2003"},{"key":"908_CR12","volume-title":"Proc Conference of Association for Computational Linguistics Natural Language Processing in Biomedicine","author":"Y Tsuruoka","year":"2003","unstructured":"Tsuruoka Y, Tsujii J: Boosting Precision and Recall of Dictionary-Based Protein Name Recognition. Proc Conference of Association for Computational Linguistics Natural Language Processing in Biomedicine. 2003"},{"key":"908_CR13","volume-title":"Proc Pacific Symposium on Biocomputing","author":"C Rindfleisch Thomas","year":"2003","unstructured":"Rindfleisch Thomas C, Tanabe L, Weinstein JN: EDGAR: Extraction of Drugs, Genes and Relations from the Biomedical Literature. Proc Pacific Symposium on Biocomputing. 2003"},{"key":"908_CR14","volume-title":"International Conference on Computational Lexicography (COMPLEX '99)","author":"K Frantzi","year":"1999","unstructured":"Frantzi K, Ananiadou S, et al: Automatic classification of technical terms using the NC-value method for term recognition. International Conference on Computational Lexicography (COMPLEX '99). 1999, Budapest, Hungary"},{"key":"908_CR15","volume-title":"Joint SIGDAT Conference on Empirical Methods in Natural Language Processing and Very Large Corpora (EMNLP\/VLC)","author":"S Cucerzan","year":"1999","unstructured":"Cucerzan S, D Yarowsky: Language Independent Named Entity Recognition Combining Morphological and Contextual Evidence. Joint SIGDAT Conference on Empirical Methods in Natural Language Processing and Very Large Corpora (EMNLP\/VLC). 1999, University of Maryland, MD"},{"key":"908_CR16","first-page":"707","volume-title":"Pac Symp Biocomput","author":"K Fukuda","year":"1998","unstructured":"Fukuda K, A Tamura, et al: Toward information extraction: identifying protein names from biological papers. Pac Symp Biocomput. 1998, 707-18."},{"issue":"Suppl 1","key":"908_CR17","doi-asserted-by":"publisher","first-page":"i340","DOI":"10.1093\/bioinformatics\/btg1047","volume":"19","author":"H Yu","year":"2003","unstructured":"Yu H, E Agichtein: Extracting synonymous gene and protein terms from biological literature. Bioinformatics. 2003, 19 (Suppl 1): i340-9. 10.1093\/bioinformatics\/btg1047.","journal-title":"Bioinformatics"},{"issue":"2","key":"908_CR18","doi-asserted-by":"publisher","first-page":"216","DOI":"10.1093\/bioinformatics\/btg393","volume":"20","author":"JT Chang","year":"2004","unstructured":"Chang JT, H Schutze, et al: GAPSCORE: finding gene and protein names one word at a time. Bioinformatics. 2004, 20 (2): 216-25. 10.1093\/bioinformatics\/btg393.","journal-title":"Bioinformatics"},{"issue":"Suppl 1","key":"908_CR19","doi-asserted-by":"publisher","first-page":"S97","DOI":"10.1093\/bioinformatics\/17.suppl_1.S97","volume":"17","author":"V Hatzivassiloglou","year":"2001","unstructured":"Hatzivassiloglou V, PA Duboue, et al: Disambiguating proteins, genes, and RNA in text: a machine learning approach. Bioinformatics. 2001, 17 (Suppl 1): S97-106. 10.1093\/bioinformatics\/17.suppl_1.S97.","journal-title":"Bioinformatics"},{"key":"908_CR20","first-page":"369","volume-title":"Proc of the 5th NLPRS","author":"C Nobata","year":"1999","unstructured":"Nobata C, N Collier, et al: Automatic term identification and classification in biology texts. Proc of the 5th NLPRS. 1999, 369-374."},{"key":"908_CR21","volume-title":"Proceeding of ACL workshop on NLP in biomedicine","author":"K Lee","year":"2003","unstructured":"Lee K, Y Hwang, et al: Two-phase biomedical NE recognition based on SVMs. Proceeding of ACL workshop on NLP in biomedicine. 2003"},{"key":"908_CR22","volume-title":"Proceedings of the Joint Workshop on Natural Language Processing in Biomedicine and its Applications","author":"G Zhou","year":"2004","unstructured":"Zhou G, Su J: Exploring Deep Knowledge Resources in Biomedical Name Recognition. Proceedings of the Joint Workshop on Natural Language Processing in Biomedicine and its Applications. 2004"},{"issue":"12","key":"908_CR23","doi-asserted-by":"publisher","first-page":"1633","DOI":"10.1093\/bioinformatics\/bts183","volume":"28","author":"T Rockt\u00e4schel","year":"2012","unstructured":"Rockt\u00e4schel T, Weidlich M, Leser U: ChemSpot: a hybrid system for chemical named entity recognition. Bioinformatics. 2012, 28 (12): 1633-1640. 10.1093\/bioinformatics\/bts183.","journal-title":"Bioinformatics"},{"key":"908_CR24","first-page":"btt639v2","volume-title":"Bioinformatics","author":"A Usi\u00e9","year":"2013","unstructured":"Usi\u00e9 A, Rui Alves1 R, Solsona F, V\u00e1zquez3 M, Valencia A: CheNER: chemical named entity recognizer. Bioinformatics. 2013, btt639v2-btt639."},{"key":"908_CR25","volume-title":"Proceedings of Semeval","author":"I Segura Bedmar","year":"2013","unstructured":"Segura Bedmar I, Mart\u00ednez P, Herrero Zazo M: SemEval 2013 Task 9 : Extraction of Drug-Drug Interactions fromBiomedical Texts (DDIExtraction 2013). Proceedings of Semeval. 2013"}],"container-title":["BMC Medical Informatics and Decision Making"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1472-6947-15-S1-S9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1472-6947-15-S1-S9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1472-6947-15-S1-S9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,2]],"date-time":"2021-09-02T19:50:46Z","timestamp":1630612246000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcmedinformdecismak.biomedcentral.com\/articles\/10.1186\/1472-6947-15-S1-S9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,5,20]]},"references-count":25,"journal-issue":{"issue":"S1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["908"],"URL":"https:\/\/doi.org\/10.1186\/1472-6947-15-s1-s9","relation":{},"ISSN":["1472-6947"],"issn-type":[{"value":"1472-6947","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,5,20]]},"assertion":[{"value":"20 May 2015","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"S9"}}