{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,6]],"date-time":"2026-02-06T04:39:38Z","timestamp":1770352778701,"version":"3.49.0"},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2010,6,24]],"date-time":"2010-06-24T00:00:00Z","timestamp":1277337600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Med Genomics"],"published-print":{"date-parts":[[2010,12]]},"DOI":"10.1186\/1755-8794-3-24","type":"journal-article","created":{"date-parts":[[2010,6,24]],"date-time":"2010-06-24T18:15:50Z","timestamp":1277403350000},"source":"Crossref","is-referenced-by-count":20,"title":["Examining smoking-induced differential gene expression changes in buccal mucosa"],"prefix":"10.1186","volume":"3","author":[{"given":"Doris M","family":"Kupfer","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vicky L","family":"White","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marita C","family":"Jenkins","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dennis","family":"Burian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2010,6,24]]},"reference":[{"issue":"2","key":"159_CR1","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1515\/CCLM.2005.026","volume":"43","author":"MD Thompson","year":"2005","unstructured":"Thompson MD, Bowen RA, Wong YBY, Antal J, Liu Z, Yu H, Siminovitch K, Kreiger N, Rohan TE, Cole DE: Whole genome amplification of buccal cell DNA: genotyping concordance before and after multiple displacement amplification. Clin Chem Lab Med. 2005, 43 (2): 157-162. 10.1515\/CCLM.2005.026.","journal-title":"Clin Chem Lab Med"},{"key":"159_CR2","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1111\/j.1651-2227.1985.tb10928.x","volume":"74","author":"O Ceder","year":"1985","unstructured":"Ceder O, van Dijken J, Ericson T, Kollberg H: Ribonuclease in different types of saliva from cystic fibrosis patients. Acta Paediatr Scand. 1985, 74: 102-106. 10.1111\/j.1651-2227.1985.tb10928.x.","journal-title":"Acta Paediatr Scand"},{"issue":"3","key":"159_CR3","doi-asserted-by":"publisher","first-page":"481","DOI":"10.1093\/carcin\/22.3.481","volume":"22","author":"M Vondracek","year":"2001","unstructured":"Vondracek M, Xi Z, Larsson P, Baker V, Mace K, Pfeifer A, Tjalve H, Donato MT, Gomez-Lechon MJ, Grafstrom RC: Cytochrome P450 expression and related metabolism in human buccal mucosa. Carcinogenesis. 2001, 22 (3): 481-488. 10.1093\/carcin\/22.3.481.","journal-title":"Carcinogenesis"},{"key":"159_CR4","doi-asserted-by":"crossref","first-page":"484","DOI":"10.2144\/04363RN03","volume":"36","author":"A Spira","year":"2004","unstructured":"Spira A, Beane J, Schembri F, Liu G, Ding C, Gilman S, Yang X, Cantor C, Brody JS: Noninvasive method for obtaining RNA from buccal mucosa epithelial cells for gene expression profiling. BioTechniques. 2004, 36: 484-487.","journal-title":"BioTechniques"},{"key":"159_CR5","doi-asserted-by":"publisher","first-page":"6805","DOI":"10.1158\/0008-5472.CAN-04-1771","volume":"64","author":"SD Spivack","year":"2004","unstructured":"Spivack SD, Hurteau GJ, Jain R, Kumar SV, Aldous MKM, Gierthy JF, Kaminsky LS: Gene-environment interaction signatures by quantitative mRNA profiling in exfoliated buccal mucosal cells. Cancer Res. 2004, 64: 6805-6813. 10.1158\/0008-5472.CAN-04-1771.","journal-title":"Cancer Res"},{"key":"159_CR6","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1186\/1471-2164-9-259","volume":"9","author":"S Sridhar","year":"2008","unstructured":"Sridhar S, Schembri F, Zeskind J, Shah V, Gustafson AM, Steiling K, Liu G, Dumas Y-M, Zhang X, Brody JS, Lenburg ME, Spira A: Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium. BMC Genomics. 2008, 9: 259-10.1186\/1471-2164-9-259.","journal-title":"BMC Genomics"},{"key":"159_CR7","doi-asserted-by":"crossref","unstructured":"Shah V, Sridhar S, Beane J, Brody JS, Spira A: SIEGE: Smoking induced epithelial gene expression database. Nucleic Acids Research. 2005, D573-D579. 33 database","DOI":"10.1093\/nar\/gki035"},{"issue":"43","key":"159_CR8","doi-asserted-by":"publisher","first-page":"15545","DOI":"10.1073\/pnas.0506580102","volume":"102","author":"A Subramanian","year":"2005","unstructured":"Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci. 2005, 102 (43): 15545-15550. 10.1073\/pnas.0506580102.","journal-title":"Proc Natl Acad Sci"},{"issue":"9","key":"159_CR9","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"VG Tusher","year":"2001","unstructured":"Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci. 2001, 98 (9): 5116-5121. 10.1073\/pnas.091062498.","journal-title":"Proc Natl Acad Sci"},{"key":"159_CR10","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1016\/j.febslet.2004.07.055","volume":"573","author":"R Breitling","year":"2004","unstructured":"Breitling R, Armengaud P, Amtmann A, Herzyk P: Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Letters. 2004, 573: 83-92. 10.1016\/j.febslet.2004.07.055.","journal-title":"FEBS Letters"},{"key":"159_CR11","unstructured":"Ingenuity Pathway Analysis (IPA). [ http:\/\/www.ingenuity.com\/ ]"},{"issue":"3","key":"159_CR12","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1089\/153623103322452378","volume":"7","author":"R Vadigepalli","year":"2003","unstructured":"Vadigepalli R, Chakravarthula P, Zak DE, Schwaber JS, Gonye GE: PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. OMICS. 2003, 7 (3): 235-252. 10.1089\/8482623103322452378.","journal-title":"OMICS"},{"key":"159_CR13","unstructured":"TRANSFAC database of conserved transcription factor binding sites. [ http:\/\/www.gene-regulation.com\/pub\/databases.html ]"},{"key":"159_CR14","unstructured":"PreAnalytiX Technical Notes. [ http:\/\/www.preanalytix.com\/Tech_Notes.asp# ]"},{"issue":"2","key":"159_CR15","doi-asserted-by":"publisher","first-page":"R19","DOI":"10.1186\/gb-2007-8-2-r19","volume":"8","author":"J Hellemans","year":"2007","unstructured":"Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J: qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8 (2): R19-10.1186\/gb-2007-8-2-r19.","journal-title":"Genome Biol"},{"key":"159_CR16","unstructured":"Parman C, Hallman C, Gentleman R: AffyQCreport. [ http:\/\/www.bioconductor.org\/packages\/2.4\/bioc\/html\/affyQCReport.html ]"},{"key":"159_CR17","unstructured":"Bolstad BM: affyPLM. [ http:\/\/www.bioconductor.org\/packages\/bioc\/1.6\/src\/contrib\/html\/affyPLM.html ]"},{"key":"159_CR18","unstructured":"Bioconductor: open source software for bioinformatics. [ http:\/\/www.bioconductor.org\/ ]"},{"issue":"2","key":"159_CR19","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1093\/biostatistics\/4.2.249","volume":"4","author":"RA Irizarry","year":"2003","unstructured":"Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Schere P, Speed TP: Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003, 4 (2): 249-264. 10.1093\/biostatistics\/4.2.249.","journal-title":"Biostatistics"},{"key":"159_CR20","unstructured":"AMP: Automated Microarray Pipeline. [ http:\/\/compbio.dfci.harvard.edu\/amp ]"},{"key":"159_CR21","unstructured":"TM4 Microarray Software Suite. [ http:\/\/www.tm4.org ]"},{"issue":"2","key":"159_CR22","doi-asserted-by":"crossref","first-page":"374","DOI":"10.2144\/03342mt01","volume":"34","author":"AI Saeed","year":"2003","unstructured":"Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J: TM4: a free, open-source system for microarray data management and analysis. Biotechniques. 2003, 34 (2): 374-378.","journal-title":"Biotechniques"},{"key":"159_CR23","unstructured":"Gene Set Enrichment Analysis. [ http:\/\/www.broad.mit.edu\/gsea ]"},{"issue":"11","key":"159_CR24","doi-asserted-by":"publisher","first-page":"R130","DOI":"10.1186\/gb-2009-10-11-r130","volume":"10","author":"C Wu","year":"2009","unstructured":"Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW, Su AI: BioGPS: an extensible and customizable portal for organizing and querying gene annotation resources. Genome Biol. 2009, 10 (11): R130-10.1186\/gb-2009-10-11-r130. [ http:\/\/biogps.gnf.org ]","journal-title":"Genome Biol"},{"key":"159_CR25","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1007\/0-387-29362-0_3","volume-title":"Bioinformatics and Computational Biology Solutions Using R and Bioconductor","author":"BM Bolstad","year":"2005","unstructured":"Bolstad BM, Collin F, Brettschneider J, Simpson K, Cope L, Irizarry RA, Speed TP: Quality assessment of Affymetrix GeneChip data. Bioinformatics and computational biology solutions using R and Bioconductor. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Edited by: Gentleman R, Carey V, Huber W, Irizarry RA, Dudoit S. 2005, Springer, 33-47. full_text."},{"key":"159_CR26","unstructured":"SIEGE-Smoking induced epithelial gene expression database. [ http:\/\/pulm.bumc.bu.edu\/siegeDB\/ ]"},{"key":"159_CR27","unstructured":"Oliveros JC: VENNY. An interactive tool for comparing lists with Venn Diagrams. [ http:\/\/bioinfogp.cnb.csic.es\/tools\/venny\/index.html ]"},{"key":"159_CR28","unstructured":"PAINT: Promoter analysis and interaction network toolset (V 3.6). [ http:\/\/www.dbi.tju.edu\/dbi\/tools\/paint\/ ]"}],"container-title":["BMC Medical Genomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1755-8794-3-24.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1755-8794-3-24\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1755-8794-3-24","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,30]],"date-time":"2019-05-30T11:32:21Z","timestamp":1559215941000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcmedgenomics.biomedcentral.com\/articles\/10.1186\/1755-8794-3-24"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,6,24]]},"references-count":28,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2010,12]]}},"alternative-id":["159"],"URL":"https:\/\/doi.org\/10.1186\/1755-8794-3-24","relation":{},"ISSN":["1755-8794"],"issn-type":[{"value":"1755-8794","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,6,24]]},"article-number":"24"}}