{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,25]],"date-time":"2025-09-25T17:05:40Z","timestamp":1758819940193},"reference-count":23,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,3,18]],"date-time":"2015-03-18T00:00:00Z","timestamp":1426636800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/s12859-015-0504-5","type":"journal-article","created":{"date-parts":[[2015,3,17]],"date-time":"2015-03-17T00:02:39Z","timestamp":1426550559000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Constrained distance transforms for spatial atlas registration"],"prefix":"10.1186","volume":"16","author":[{"given":"Bill","family":"Hill","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard A","family":"Baldock","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,3,18]]},"reference":[{"issue":"22","key":"504_CR1","doi-asserted-by":"publisher","first-page":"7349","DOI":"10.1093\/nar\/gkp819","volume":"37","author":"BA de Boer","year":"2009","unstructured":"de Boer BA, Ruijter JM, Voorbraak FPJM, Moorman AFM. More than a decade of developmental gene expression atlases: where are we now?Nucleic Acids Res. 2009; 37(22):7349\u201359.","journal-title":"Nucleic Acids Res."},{"key":"504_CR2","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1385\/NI:1:4:309","volume":"1","author":"R Baldock","year":"2003","unstructured":"Baldock R, Bard J, Burger A, Burton N, Christiansen J, Feng G, et al. EMAP and EMAGE: A framework for understanding spatially organised data. Neuroinformatics. 2003; 1:309\u201325.","journal-title":"Neuroinformatics"},{"issue":"7124","key":"504_CR3","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1038\/nature05453","volume":"445","author":"ES Lein","year":"2007","unstructured":"Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature. 2007; 445(7124):168\u201376.","journal-title":"Nature"},{"key":"504_CR4","volume-title":"Numerical methods for image registration","author":"J Modersitzki","year":"2004","unstructured":"Modersitzki J. Numerical methods for image registration. New York: Oxford University Press; 2004."},{"key":"504_CR5","volume-title":"Medical Imaging 2005: Image Processing","author":"MA Mart\u00edn-Fern\u00e1ndez","year":"2005","unstructured":"Mart\u00edn-Fern\u00e1ndez MA, Mu\u00f1oz-Moreno E, Mart\u00edn-Fern\u00e1ndez M, Alberola-L\u00f3pez C. Articulated registration: Elastic registration based on a wire-model In: Fitzpatrick JM, Reinhardt JM, editors. Medical Imaging 2005: Image Processing. San Diego, USA: SPIE Press: 2005. p. 182\u201391."},{"key":"504_CR6","doi-asserted-by":"crossref","unstructured":"Baldock RA, Hill B. 9. Image warping and spatial data mapping In: Baldock R, Graham J, editors. Oxford, UK: Oxford Uiversity Press: 2000.","DOI":"10.1093\/oso\/9780199637010.003.0009"},{"issue":"0","key":"504_CR7","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1016\/j.ymeth.2014.09.002","volume":"73","author":"L Qu","year":"2015","unstructured":"Qu L, Peng H. Littlequickwarp: An ultrafast image warping tool. Methods. 2015; 73(0):38\u201342.","journal-title":"Methods"},{"key":"504_CR8","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1016\/0167-8655(85)90018-2","volume":"3","author":"J Piper","year":"1985","unstructured":"Piper J, Rutovitz D. Data structures for image processing in a c language and unix environment. Pattern Recognition Lett. 1985; 3:119\u2013129.","journal-title":"Pattern Recognition Lett"},{"key":"504_CR9","volume-title":"Numerical recipies in C: The art of scientific computing","author":"WH Press","year":"1992","unstructured":"Press WH, Teukolsky SA, Vetterling WT, Flannery BP. Numerical recipies in C: The art of scientific computing. Cambridge, England: Cambridge University Press; 1992."},{"key":"504_CR10","volume-title":"Lecture Notes in Computer Science 511: Information Processing in Medical Imaging","author":"FL Bookstein","year":"1991","unstructured":"Bookstein FL. Thin-plate splines and the atlas problem for biomedical images. In: Lecture Notes in Computer Science 511: Information Processing in Medical Imaging. Heidelberg, Germany: Springer: 1991. p. 326\u201342."},{"key":"504_CR11","unstructured":"Fogel DN. Image registration using multiquadric functions, the finite element method, bivariate mapping polynomials and the thin plate spline. Technical Report 96, National Center for Geographic Information and Analysis, USA, 1996."},{"key":"504_CR12","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511543241","volume-title":"Radial basis functions","author":"MD Buhmann","year":"2003","unstructured":"Buhmann MD. Radial basis functions. New York, NY, USA: Cambridge University Press; 2003."},{"key":"504_CR13","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1007\/BF02123482","volume":"4","author":"H Wendland","year":"1995","unstructured":"Wendland H. Piecewise polynomial, positive definite and compactly supported radial basis functions of minimal degree. Adv Comput Math. 1995; 4:389\u201396.","journal-title":"Adv Comput Math"},{"issue":"8","key":"504_CR14","doi-asserted-by":"publisher","first-page":"1568","DOI":"10.1118\/1.598671","volume":"26","author":"MA Jacobs","year":"1999","unstructured":"Jacobs MA, Windham JP, Soltanian-Zadeh H, Peck DJ, Knight RA. Registration and warping of magnetic resonance images of histological sections. Med Phys. 1999; 26(8):1568\u201378.","journal-title":"Med Phys"},{"key":"504_CR15","doi-asserted-by":"crossref","DOI":"10.21236\/ADA081688","volume-title":"A critical comparison of some methods for interpolation of scattered data. Technical Report NPS-53-79-003","author":"R Franke","year":"1979","unstructured":"Franke R. A critical comparison of some methods for interpolation of scattered data. Technical Report NPS-53-79-003. Monterey, California, USA: Naval Postgraduate School; 1979."},{"issue":"2","key":"504_CR16","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1016\/0031-3203(84)90057-8","volume":"17","author":"C Lantuejoul","year":"1984","unstructured":"Lantuejoul C, Maisonneuve F. Geodesic methods in quantitative image analysis. Pattern Recognit. 1984; 17(2):177\u201387.","journal-title":"Pattern Recognit"},{"key":"504_CR17","volume-title":"Distance transformations: Fast algorithms and applications to medical image processing","author":"O Cuisenaire","year":"1999","unstructured":"Cuisenaire O. Distance transformations: Fast algorithms and applications to medical image processing. Belgium: PhD thesis, Laboratoire de Telecommunications et Teledetection, Universit\u00e9 catholique de Louvain; 1999."},{"issue":"3","key":"504_CR18","doi-asserted-by":"publisher","first-page":"307","DOI":"10.1016\/j.imavis.2009.05.013","volume":"28","author":"R C\u00e1rdenes","year":"2010","unstructured":"C\u00e1rdenes R, Alberola-L\u00f3pez C, Ruiz-Alzola J. Fast and accurate geodesic distance transform by ordered propagation. Image Vis. Comput. 2010; 28(3):307\u201316.","journal-title":"Image Vis. Comput"},{"issue":"6","key":"504_CR19","doi-asserted-by":"publisher","first-page":"599","DOI":"10.1016\/0031-3203(87)90030-6","volume":"20","author":"J Piper","year":"1987","unstructured":"Piper J, Granum E. Computing distance transformations in convex and non-convex domains. Pattern Recognit. 1987; 20(6):599\u2013615.","journal-title":"Pattern Recognit"},{"key":"504_CR20","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1137\/050627083","volume":"45","author":"J Qian","year":"2007","unstructured":"Qian J, Zhang YT, Zhao HK. Fast sweeping methods for eikonal equations on triangulated meshes. SIAM J Numeric Anal. 2007; 45:83\u2013107.","journal-title":"SIAM J Numeric Anal"},{"key":"504_CR21","volume-title":"Digital image warping","author":"G Wolberg","year":"1992","unstructured":"Wolberg G. Digital image warping. Los Alamitos, California: IEE Computer Society Press; 1992."},{"key":"504_CR22","volume-title":"SM \u201903: Proceedings of the Eighth ACM Symposium on Solid Modeling and Applications","author":"Y Zhang","year":"2003","unstructured":"Zhang Y, Bajaj C, Sohn B-S. Adaptive and quality 3d meshing from imaging data. In: SM \u201903: Proceedings of the Eighth ACM Symposium on Solid Modeling and Applications. New York, NY, USA: ACM Press: 2003. p. 286\u201391."},{"key":"504_CR23","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/s007910050004","volume":"1","author":"J Sch\u00f6berl","year":"1997","unstructured":"Sch\u00f6berl J. Netgen - an advancing front 2D\/3D-mesh generator based on abstract rules. Comput Visual Sci. 1997; 1:41\u201352.","journal-title":"Comput Visual Sci"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12859-015-0504-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0504-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0504-5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0504-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T21:53:00Z","timestamp":1717797180000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0504-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,3,18]]},"references-count":23,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["504"],"URL":"https:\/\/doi.org\/10.1186\/s12859-015-0504-5","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,3,18]]},"assertion":[{"value":"13 October 2014","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 February 2015","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 March 2015","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"90"}}