{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,25]],"date-time":"2026-04-25T12:25:10Z","timestamp":1777119910971,"version":"3.51.4"},"reference-count":55,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,6,6]],"date-time":"2015-06-06T00:00:00Z","timestamp":1433548800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/s12859-015-0609-x","type":"journal-article","created":{"date-parts":[[2015,6,5]],"date-time":"2015-06-05T12:49:16Z","timestamp":1433508556000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":24,"title":["Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature"],"prefix":"10.1186","volume":"16","author":[{"given":"Komandur Elayavilli","family":"Ravikumar","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kavishwar B.","family":"Wagholikar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dingcheng","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jean-Pierre","family":"Kocher","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hongfang","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,6,6]]},"reference":[{"key":"609_CR1","volume-title":"Health care savings from personalizing medicine using genetic testing: the case of warfarin: AEI-Brookings Joint Center for Regulatory Studies","author":"A McWilliam","year":"2006","unstructured":"McWilliam A, Lutter RW, Nardinelli C. Health care savings from personalizing medicine using genetic testing: the case of warfarin: AEI-Brookings Joint Center for Regulatory Studies. 2006."},{"issue":"D1","key":"609_CR2","doi-asserted-by":"publisher","first-page":"D980","DOI":"10.1093\/nar\/gkt1113","volume":"42","author":"MJ Landrum","year":"2014","unstructured":"Landrum MJ, Lee JM, Riley GR, Jang W, Rubinstein WS, Church DM, et al. ClinVar: public archive of relationships among sequence variation and human phenotype. Nucleic Acids Res. 2014;42(D1):D980\u20135.","journal-title":"Nucleic Acids Res"},{"issue":"suppl 1","key":"609_CR3","first-page":"D514","volume":"33","author":"A Hamosh","year":"2005","unstructured":"Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 2005;33 suppl 1:D514\u20137.","journal-title":"Nucleic Acids Res"},{"issue":"suppl 1","key":"609_CR4","doi-asserted-by":"publisher","first-page":"D115","DOI":"10.1093\/nar\/gkh131","volume":"32","author":"R Apweiler","year":"2004","unstructured":"Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, et al. UniProt: the universal protein knowledgebase. Nucleic Acids Res. 2004;32 suppl 1:D115.","journal-title":"Nucleic Acids Res"},{"issue":"21","key":"609_CR5","doi-asserted-by":"publisher","first-page":"4047","DOI":"10.1016\/j.jmb.2013.08.008","volume":"425","author":"TA Peterson","year":"2013","unstructured":"Peterson TA, Doughty E, Kann MG. Towards precision medicine: advances in computational approaches for the analysis of human variants. J Mol Biol. 2013;425(21):4047\u201363.","journal-title":"J Mol Biol"},{"issue":"4","key":"609_CR6","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1186\/alzrt137","volume":"4","author":"SC Jin","year":"2012","unstructured":"Jin SC, Pastor P, Cooper B, Cervantes S, Benitez BA, Razquin C, et al. Pooled-DNA sequencing identifies novel causative variants in PSEN1, GRN and MAPT in a clinical early-onset and familial Alzheimer's disease Ibero-American cohort. Alzheimers Res Ther. 2012;4(4):34.","journal-title":"Alzheimers Res Ther"},{"issue":"8","key":"609_CR7","doi-asserted-by":"publisher","first-page":"e1003685","DOI":"10.1371\/journal.pgen.1003685","volume":"9","author":"BA Benitez","year":"2013","unstructured":"Benitez BA, Karch CM, Cai Y, Jin SC, Cooper B, Carrell D, et al. The PSEN1, p. E318G Variant Increases the Risk of Alzheimer's Disease in APOE-\u03b54 Carriers. PLoS Genet. 2013;9(8):e1003685.","journal-title":"PLoS Genet"},{"issue":"2","key":"609_CR8","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1007\/s10048-014-0395-z","volume":"15","author":"A Llad\u00f3","year":"2014","unstructured":"Llad\u00f3 A, Grau-Rivera O, S\u00e1nchez-Valle R, Balasa M, Obach V, Amaro S, et al. Large APP locus duplication in a sporadic case of cerebral haemorrhage. Neurogenetics. 2014;15(2):145\u20139.","journal-title":"Neurogenetics"},{"key":"609_CR9","doi-asserted-by":"crossref","unstructured":"Cruchaga C, Ebbert MT, Kauwe JS. Genetic discoveries in AD using CSF amyloid and tau. Current Genetic Medicine Reports. 2014;2(1)23\u201329.","DOI":"10.1007\/s40142-014-0031-0"},{"issue":"3","key":"609_CR10","doi-asserted-by":"publisher","first-page":"272","DOI":"10.1097\/WAD.0b013e318231e6c7","volume":"26","author":"J Kr\u00fcger","year":"2012","unstructured":"Kr\u00fcger J, Moilanen V, Majamaa K, Remes AM. Molecular genetic analysis of the app, Psen1, and Psen2 genes in finnish patients with Early-onset Alzheimer disease and frontotemporal lobar degeneration. Alzheimer Dis Assoc Disord. 2012;26(3):272\u20136.","journal-title":"Alzheimer Dis Assoc Disord"},{"issue":"10","key":"609_CR11","doi-asserted-by":"publisher","first-page":"1624","DOI":"10.1001\/archneur.62.10.1624","volume":"62","author":"JS Goldman","year":"2005","unstructured":"Goldman JS, Johnson JK, McElligott K, Suchowersky O, Miller BL, Van Deerlin VM. Presenilin 1 Glu318Gly polymorphism: interpret with caution. Arch Neurol. 2005;62(10):1624\u20137.","journal-title":"Arch Neurol"},{"issue":"13","key":"609_CR12","doi-asserted-by":"publisher","first-page":"i41","DOI":"10.1093\/bioinformatics\/btm229","volume":"23","author":"WA Baumgartner","year":"2007","unstructured":"Baumgartner WA, Cohen KB, Fox LM, Acquaah-Mensah G, Hunter L. Manual curation is not sufficient for annotation of genomic databases. Bioinformatics. 2007;23(13):i41\u20138.","journal-title":"Bioinformatics"},{"key":"609_CR13","doi-asserted-by":"publisher","first-page":"1862","DOI":"10.1093\/bioinformatics\/btm235","volume":"23","author":"JG Caporaso","year":"2007","unstructured":"Caporaso JG, Baumgartner Jr WA, Randolph DA, Cohen KB, Hunter L. MutationFinder: A high-performance system for extracting point mutation mentions from text. Bioinformatics. 2007;23:1862\u20135.","journal-title":"Bioinformatics"},{"issue":"3","key":"609_CR14","doi-asserted-by":"publisher","first-page":"408","DOI":"10.1093\/bioinformatics\/btq667","volume":"27","author":"E Doughty","year":"2011","unstructured":"Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, et al. Toward an automatic method for extracting cancer-and other disease-related point mutations from the biomedical literature. Bioinformatics. 2011;27(3):408\u201315.","journal-title":"Bioinformatics"},{"issue":"11","key":"609_CR15","doi-asserted-by":"publisher","first-page":"1433","DOI":"10.1093\/bioinformatics\/btt156","volume":"29","author":"C-H Wei","year":"2013","unstructured":"Wei C-H, Harris BR, Kao H-Y, Lu Z. tmVar: a text mining approach for extracting sequence variants in biomedical literature. Bioinformatics. 2013;29(11):1433\u20139.","journal-title":"Bioinformatics"},{"issue":"1","key":"609_CR16","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1093\/nar\/gkh162","volume":"32","author":"D Rebholz Schuhmann","year":"2004","unstructured":"Rebholz Schuhmann D, Marcel S, Albert S, Tolle R, Casari G, Kirsch H. Automatic extraction of mutations from medline and cross validation with omim. Nucleic Acids Res. 2004;32(1):135.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"609_CR17","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1093\/bioinformatics\/btg449","volume":"20","author":"F Horn","year":"2004","unstructured":"Horn F, Lau AL, Cohen FE. Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors. Bioinformatics. 2004;20(4):557.","journal-title":"Bioinformatics"},{"issue":"06","key":"609_CR18","doi-asserted-by":"publisher","first-page":"1261","DOI":"10.1142\/S021972000700317X","volume":"5","author":"M Erdogmus","year":"2007","unstructured":"Erdogmus M, Sezerman OU. Application of automatic mutation\u2013gene pair extraction to diseases. J Bioinform Comput Biol. 2007;5(06):1261\u201375.","journal-title":"J Bioinform Comput Biol"},{"issue":"2","key":"609_CR19","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.0030016","volume":"3","author":"LC Lee","year":"2007","unstructured":"Lee LC, Horn F, Cohen FE. Automatic extraction of protein point mutations using a graph bigram association. PLoS Comput Biol. 2007;3(2), e16.","journal-title":"PLoS Comput Biol"},{"issue":"suppl 2","key":"609_CR20","doi-asserted-by":"publisher","first-page":"W399","DOI":"10.1093\/nar\/gkn296","volume":"36","author":"D Cheng","year":"2008","unstructured":"Cheng D, Knox C, Young N, Stothard P, Damaraju S, Wishart DS. PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res. 2008;36 suppl 2:W399\u2013405.","journal-title":"Nucleic Acids Res"},{"issue":"8","key":"609_CR21","doi-asserted-by":"publisher","first-page":"334","DOI":"10.1016\/S0167-7799(00)01463-3","volume":"18","author":"DR Pfost","year":"2000","unstructured":"Pfost DR, Boyce-Jacino MT, Grant DM. A SNPshot: pharmacogenetics and the future of drug therapy. Trends Biotechnol. 2000;18(8):334\u20138.","journal-title":"Trends Biotechnol"},{"issue":"suppl 1","key":"609_CR22","first-page":"D54","volume":"33","author":"D Maglott","year":"2005","unstructured":"Maglott D, Ostell J, Pruitt KD, Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res. 2005;33 suppl 1:D54\u20138.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"609_CR23","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1093\/nar\/30.1.163","volume":"30","author":"M Hewett","year":"2002","unstructured":"Hewett M, Oliver DE, Rubin DL, Easton KL, Stuart JM, Altman RB, et al. PharmGKB: the pharmacogenetics knowledge base. Nucleic Acids Res. 2002;30(1):163\u20135.","journal-title":"Nucleic Acids Res"},{"issue":"suppl 2","key":"609_CR24","doi-asserted-by":"publisher","first-page":"W623","DOI":"10.1093\/nar\/gkp456","volume":"37","author":"Y Wang","year":"2009","unstructured":"Wang Y, Xiao J, Suzek TO, Zhang J, Wang J, Bryant SH. PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 2009;37 suppl 2:W623\u201333.","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 4","key":"609_CR25","doi-asserted-by":"publisher","first-page":"S10","DOI":"10.1186\/1471-2164-13-S4-S10","volume":"13","author":"N Naderi","year":"2012","unstructured":"Naderi N, Witte R. Automated extraction and semantic analysis of mutation impacts from the biomedical literature. BMC Genomics. 2012;13 Suppl 4:S10.","journal-title":"BMC Genomics"},{"issue":"6","key":"609_CR26","doi-asserted-by":"publisher","first-page":"1009","DOI":"10.1016\/j.jbi.2010.08.005","volume":"43","author":"A Coulet","year":"2010","unstructured":"Coulet A, Shah NH, Garten Y, Musen M, Altman RB. Using text to build semantic networks for pharmacogenomics. J Biomed Inform. 2010;43(6):1009\u201319.","journal-title":"J Biomed Inform"},{"issue":"10","key":"609_CR27","doi-asserted-by":"publisher","first-page":"1467","DOI":"10.2217\/pgs.10.136","volume":"11","author":"Y Garten","year":"2010","unstructured":"Garten Y, Coulet A, Altman RB. Recent progress in automatically extracting information from the pharmacogenomic literature. Pharmacogenomics. 2010;11(10):1467\u201389.","journal-title":"Pharmacogenomics"},{"key":"609_CR28","doi-asserted-by":"crossref","unstructured":"Hirschman L, Burns GAP, Krallinger M, Arighi C, Cohen KB, Valencia A, et al. Text mining for the biocuration workflow. Database: JBiological DatabasesCuration. 2012;2012.","DOI":"10.1093\/database\/bas020"},{"key":"609_CR29","doi-asserted-by":"crossref","unstructured":"Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A: An overview of BioCreative II. IEEE\/ACM Computational Biology and Bioinformatics 2010;7:(3)385\u2013399.","DOI":"10.1109\/TCBB.2010.61"},{"key":"609_CR30","doi-asserted-by":"publisher","first-page":"472","DOI":"10.1109\/TCBB.2010.50","volume":"7","author":"F Rinaldi","year":"2010","unstructured":"Rinaldi F, Schneider G, Kaljurand K, Clematide S, Vachon T, Romacker M. Ontogene in biocreative ii. 5. IEEE IEEE\/ACM Transact Computational BioBioinformatics. 2010;7:472\u201380.","journal-title":"IEEE IEEE\/ACM Transact Computational BioBioinformatics"},{"key":"609_CR31","first-page":"541","volume-title":"ACL","author":"R Hoffmann","year":"2011","unstructured":"Hoffmann R, Zhang C, Ling X, Zettlemoyer LS, Weld DS. Knowledge-Based Weak Supervision for Information Extraction of Overlapping Relations. In: ACL. 2011. p. 541\u201350."},{"key":"609_CR32","series-title":"Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies Association for Computational Linguistics","first-page":"277","volume-title":"End-to-End Relation Extraction Using Distant Supervision from External Semantic Repositories","author":"T-VT Nguyen","year":"2011","unstructured":"Nguyen T-VT, Moschitti A. End-to-End Relation Extraction Using Distant Supervision from External Semantic Repositories, Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies Association for Computational Linguistics. 2011. p. 277\u201382."},{"issue":"Suppl 3","key":"609_CR33","doi-asserted-by":"crossref","first-page":"S2","DOI":"10.1186\/2041-1480-3-S3-S2","volume":"3","author":"K Ravikumar","year":"2012","unstructured":"Ravikumar K, Liu H, Cohn JD, Wall ME, Verspoor K. Literature protein-residue associations with graph Rules learned through distant supervision. J Biomedical Semantics. 2012;3 Suppl 3:S2.","journal-title":"J Biomedical Semantics"},{"key":"609_CR34","volume-title":"2011; Honolulu","author":"Ravikumar KE, Cohn JD, Wall ME, Verspoor K: Pattern Learning Through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. In: Proceedings of The Tenth International Conference on Machine Learning and Applications (ICMLA)","year":"2011","unstructured":"Ravikumar KE, Cohn JD, Wall ME, Verspoor K: Pattern Learning Through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. In: Proceedings of The Tenth International Conference on Machine Learning and Applications (ICMLA). 2011; Honolulu. USA: Hawaii; 2011."},{"issue":"3\u20134","key":"609_CR35","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1017\/S1351324904003523","volume":"10","author":"D Ferrucci","year":"2004","unstructured":"Ferrucci D, Lally A. UIMA: an architectural approach to unstructured information processing in the corporate research environment. Nat Lang Eng. 2004;10(3\u20134):327\u201348.","journal-title":"Nat Lang Eng"},{"issue":"suppl 1","key":"609_CR36","doi-asserted-by":"publisher","first-page":"D267","DOI":"10.1093\/nar\/gkh061","volume":"32","author":"O Bodenreider","year":"2004","unstructured":"Bodenreider O. The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004;32 suppl 1:D267\u201370.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"609_CR37","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1093\/bioinformatics\/bti749","volume":"22","author":"H Liu","year":"2006","unstructured":"Liu H, Hu Z-Z, Zhang J, Wu C. BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics. 2006;22(1):103\u20135.","journal-title":"Bioinformatics"},{"issue":"suppl 1","key":"609_CR38","doi-asserted-by":"publisher","first-page":"D786","DOI":"10.1093\/nar\/gkn580","volume":"37","author":"AP Davis","year":"2009","unstructured":"Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Mattingly CJ. Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical\u2013gene\u2013disease networks. Nucleic Acids Res. 2009;37 suppl 1:D786\u201392.","journal-title":"Nucleic Acids Res"},{"key":"609_CR39","doi-asserted-by":"crossref","unstructured":"Davis AP, Wiegers TC, Rosenstein MC, Mattingly CJ. MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database. Database: JBiological DatabasesCuration. 2012;2012.","DOI":"10.1093\/database\/bar065"},{"issue":"2","key":"609_CR40","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1197\/jamia.M2844","volume":"16","author":"M Torii","year":"2009","unstructured":"Torii M, Hu Z, Wu CH, Liu H. BioTagger-GM: a gene\/protein name recognition system. J Am Med Inform Assoc. 2009;16(2):247\u201355.","journal-title":"J Am Med Inform Assoc"},{"key":"609_CR41","doi-asserted-by":"crossref","unstructured":"De Marneffe MC, Manning CD. The Stanford typed dependencies representation. In: Proceedings of the COLING\u201908 Workshop on Cross-Framework and Cross-Domain Parser Evaluation. Association for Computational Linguistics (Manchester). 2008. p. 1\u20138.","DOI":"10.3115\/1608858.1608859"},{"key":"609_CR42","doi-asserted-by":"crossref","unstructured":"Wei C-H, Kao H-Y, Lu Z. PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res. 2013;1\u20135.","DOI":"10.1093\/nar\/gkt441"},{"issue":"6","key":"609_CR43","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1093\/bioinformatics\/btp071","volume":"25","author":"J Wermter","year":"2009","unstructured":"Wermter J, Tomanek K, Hahn U. High-performance gene name normalization with GeNo. Bioinformatics. 2009;25(6):815\u201321.","journal-title":"Bioinformatics"},{"issue":"1","key":"609_CR44","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1016\/j.compbiolchem.2003.10.003","volume":"28","author":"CH Wu","year":"2004","unstructured":"Wu CH, Huang H, Nikolskaya A, Hu Z, Barker WC. The iProClass integrated database for protein functional analysis. Comput Biol Chem. 2004;28(1):87\u201396.","journal-title":"Comput Biol Chem"},{"issue":"5\u20136","key":"609_CR45","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1016\/j.compbiolchem.2004.09.010","volume":"28","author":"Z-Z Hu","year":"2004","unstructured":"Hu Z-Z, Mani I, Hermoso V, Liu H, Wu CH. iProLINK: an integrated protein resource for literature mining. Comput Biol Chem. 2004;28(5\u20136):409\u201316.","journal-title":"Comput Biol Chem"},{"issue":"6","key":"609_CR46","doi-asserted-by":"publisher","first-page":"396","DOI":"10.1016\/j.jbi.2004.08.010","volume":"37","author":"AA Morgan","year":"2004","unstructured":"Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB. Gene name identification and normalization using a model organism database. J Biomed Inform. 2004;37(6):396\u2013410.","journal-title":"J Biomed Inform"},{"issue":"7","key":"609_CR47","doi-asserted-by":"publisher","first-page":"1032","DOI":"10.1093\/bioinformatics\/btr042","volume":"27","author":"M Huang","year":"2011","unstructured":"Huang M, Liu J, Zhu X. GeneTUKit: a software for document-level gene normalization. Bioinformatics. 2011;27(7):1032\u20133.","journal-title":"Bioinformatics"},{"issue":"Suppl 8","key":"609_CR48","doi-asserted-by":"publisher","first-page":"S5","DOI":"10.1186\/1471-2105-12-S8-S5","volume":"12","author":"C-H Wei","year":"2011","unstructured":"Wei C-H, Kao H-Y. Cross-species gene normalization by species inference. BMC Bioinformatics. 2011;12 Suppl 8:S5.","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"609_CR49","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0038460","volume":"7","author":"C-H Wei","year":"2012","unstructured":"Wei C-H, Kao H-Y, Lu Z. SR4GN: a species recognition software tool for gene normalization. PLoS One. 2012;7(6), e38460.","journal-title":"PLoS One"},{"issue":"22","key":"609_CR50","doi-asserted-by":"publisher","first-page":"2909","DOI":"10.1093\/bioinformatics\/btt474","volume":"29","author":"RIDZL Robert Leaman","year":"2013","unstructured":"Robert Leaman RIDZL. DNorm: Disease Name Normalization with Pairwise Learning to Rank. Bioinformatics. 2013;29(22):2909\u201317.","journal-title":"Bioinformatics"},{"key":"609_CR51","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1186\/1471-2105-9-313","volume":"9","author":"MC Ryan","year":"2008","unstructured":"Ryan MC, Zeeberg BR, Caplen NJ, Cleland JA, Kahn AB, Liu H, et al. SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. BMC Bioinformatics. 2008;9:313.","journal-title":"BMC Bioinformatics"},{"key":"609_CR52","unstructured":"Baldridge J. The opennlp project. 2005. http:\/\/opennlp.apache.org\/index.html"},{"key":"609_CR53","unstructured":"Browne AC, Divita G, Aronson AR, McCray AT. UMLS language and vocabulary tools. AMIA Annu Symp Proc. 2003;798."},{"key":"609_CR54","doi-asserted-by":"crossref","unstructured":"Schwartz AS, Hearst MA. A simple algorithm for identifying abbreviation definitions in biomedical text. In: Proceedings of Pacific Symposium on Biocomputing, Hawii. 2003;451\u2013462","DOI":"10.1142\/9789812776303_0042"},{"key":"609_CR55","first-page":"352","volume-title":"Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing","author":"K Ravikumar","year":"2013","unstructured":"Ravikumar K, Wagholikar K, Liu H. Towards pathway curation through literature mining-a case study using pharmgkb. In: Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing. 2013. p. 352\u201363."}],"updated-by":[{"DOI":"10.1186\/s12859-016-0974-0","type":"erratum","label":"Erratum","source":"publisher","updated":{"date-parts":[[2016,4,13]],"date-time":"2016-04-13T00:00:00Z","timestamp":1460505600000}}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12859-015-0609-x\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0609-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0609-x","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0609-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,5,28]],"date-time":"2025-05-28T10:46:30Z","timestamp":1748429190000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0609-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,6,6]]},"references-count":55,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["609"],"URL":"https:\/\/doi.org\/10.1186\/s12859-015-0609-x","relation":{"erratum":[{"id-type":"doi","id":"10.1186\/s12859-016-0974-0","asserted-by":"object"}]},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,6,6]]},"assertion":[{"value":"8 July 2014","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"30 April 2015","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 June 2015","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"185"}}