{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T21:15:32Z","timestamp":1770844532772,"version":"3.50.1"},"reference-count":12,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,8,19]],"date-time":"2015-08-19T00:00:00Z","timestamp":1439942400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2015,8,19]],"date-time":"2015-08-19T00:00:00Z","timestamp":1439942400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01CA143420"],"award-info":[{"award-number":["R01CA143420"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/s12859-015-0681-2","type":"journal-article","created":{"date-parts":[[2015,8,17]],"date-time":"2015-08-17T23:22:48Z","timestamp":1439853768000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":9,"title":["SIMAT: GC-SIM-MS data analysis tool"],"prefix":"10.1186","volume":"16","author":[{"given":"Mohammad R.","family":"Nezami Ranjbar","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cristina Di","family":"Poto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yue","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Habtom W.","family":"Ressom","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,8,19]]},"reference":[{"issue":"8","key":"681_CR1","doi-asserted-by":"publisher","first-page":"770","DOI":"10.1016\/S1044-0305(99)00047-1","volume":"10","author":"SE Stein","year":"1999","unstructured":"Stein SE. An integrated method for spectrum extraction and compound identification from gas chromatography\/mass spectrometry data. J Am Soc Mass Spectrom. 1999; 10(8):770\u201381. doi:\n                    10.1016\/S1044-0305(99)00047-1\n                    \n                  .","journal-title":"J Am Soc Mass Spectrom"},{"issue":"9","key":"681_CR2","doi-asserted-by":"publisher","first-page":"3429","DOI":"10.1021\/ac802689c","volume":"81","author":"K Hiller","year":"2009","unstructured":"Hiller K, Hangebrauk J, J\u00e4ger C, Spura J, Schreiber K, Schomburg D. MetaboliteDetector: Comprehensive analysis tool for targeted and nontargeted GC\/MS based metabolome analysis. Anal Chem. 2009; 81(9):3429\u201339. doi:\n                    10.1021\/ac802689c\n                    \n                  .","journal-title":"Anal Chem"},{"issue":"5","key":"681_CR3","doi-asserted-by":"publisher","first-page":"732","DOI":"10.1093\/bioinformatics\/btn023","volume":"24","author":"A Luedemann","year":"2008","unstructured":"Luedemann A, Strassburg K, Erban A, Kopka J. TagFinder for the quantitative analysis of gas chromatography-mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics. 2008; 24(5):732\u20137. doi:\n                    10.1093\/bioinformatics\/btn023\n                    \n                  .","journal-title":"Bioinformatics"},{"issue":"1","key":"681_CR4","doi-asserted-by":"publisher","first-page":"428","DOI":"10.1186\/1471-2105-10-428","volume":"10","author":"A Cuadros-Inostroza","year":"2009","unstructured":"Cuadros-Inostroza A, Caldana C, Redestig H, Kusano M, Lisec J, Pena-Cortes H, et al.TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics. 2009; 10(1):428. doi:\n                    10.1186\/1471-2105-10-428\n                    \n                  .","journal-title":"BMC Bioinformatics"},{"key":"681_CR5","unstructured":"Agilent Mass Profiler Professional. \n                    http:\/\/www.chem.agilent.com\/en-US\/products-services\/Software-Informatics\/Mass-Profiler-Professional-Software\/Pages\n                    \n                  . default.aspx. Accessed 1 May 2015."},{"key":"681_CR6","unstructured":"Leco ChromoToF. \n                    http:\/\/www.leco.com\/products\/separation-science\/software-accessories\/chromatof-software\n                    \n                  . Accessed 1 May 2015."},{"issue":"3","key":"681_CR7","doi-asserted-by":"publisher","first-page":"779","DOI":"10.1021\/ac051437y","volume":"78","author":"CA Smith","year":"2006","unstructured":"Smith CA, Want EJ, O\u2019Maille G, Abagyan R, Siuzdak G. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal Chem. 2006; 78(3):779\u201387.","journal-title":"Anal Chem"},{"issue":"24","key":"681_CR8","doi-asserted-by":"publisher","first-page":"10038","DOI":"10.1021\/ac9019522","volume":"81","author":"T Kind","year":"2009","unstructured":"Kind T, Wohlgemuth G, Lee DY, Lu Y, Palazoglu M, Shahbaz S, et al.Fiehnlib: Mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography\/mass spectrometry. Anal Chem. 2009; 81(24):10038\u201348. doi:\n                    10.1021\/ac9019522\n                    \n                  .","journal-title":"Anal Chem"},{"key":"681_CR9","unstructured":"NIST\/EPA\/NIH Mass Spectral Library. \n                    http:\/\/www.nist.gov\/srd\/nist1a.cfm\n                    \n                  . Accessed 1 May 2015."},{"issue":"9","key":"681_CR10","doi-asserted-by":"publisher","first-page":"859","DOI":"10.1016\/1044-0305(94)87009-8","volume":"5","author":"SE Stein","year":"1994","unstructured":"Stein SE, Scott DR. Optimization and testing of mass spectral library search algorithms for compound identification. J Am Soc Mass Spectrom. 1994; 5(9):859\u201366. doi:\n                    10.1016\/1044-0305(94)87009-8\n                    \n                  .","journal-title":"J Am Soc Mass Spectrom"},{"issue":"7","key":"681_CR11","doi-asserted-by":"publisher","first-page":"1060","DOI":"10.1038\/nprot.2011.335","volume":"6","author":"WB Dunn","year":"2011","unstructured":"Dunn WB, Broadhurst D, Begley P, Zelena E, Francis-McIntyre S, Anderson N, et al.Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat Protoc. 2011; 6(7):1060\u201383. doi:\n                    10.1038\/nprot.2011.335\n                    \n                  .","journal-title":"Nat Protoc"},{"key":"681_CR12","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1007\/978-1-59745-244-1_1","volume":"358","author":"O Fiehn","year":"2007","unstructured":"Fiehn O, Kind T. Metabolite profiling in blood plasma. Methods Mol Biol. 2007; 358:3\u201317. doi:\n                    10.1007\/978-1-59745-244-1_1\n                    \n                  .","journal-title":"Methods Mol Biol"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0681-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12859-015-0681-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0681-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,14]],"date-time":"2020-05-14T10:45:39Z","timestamp":1589453139000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0681-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,8,19]]},"references-count":12,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["681"],"URL":"https:\/\/doi.org\/10.1186\/s12859-015-0681-2","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,8,19]]},"assertion":[{"value":"27 February 2015","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 July 2015","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"19 August 2015","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"259"}}