{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,4]],"date-time":"2024-06-04T23:34:26Z","timestamp":1717544066239},"reference-count":51,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,9,4]],"date-time":"2015-09-04T00:00:00Z","timestamp":1441324800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2015,9,4]],"date-time":"2015-09-04T00:00:00Z","timestamp":1441324800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"National Science Foundation","award":["DBI-1062472"],"award-info":[{"award-number":["DBI-1062472"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/s12859-015-0698-6","type":"journal-article","created":{"date-parts":[[2015,9,3]],"date-time":"2015-09-03T11:28:06Z","timestamp":1441279686000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements"],"prefix":"10.1186","volume":"16","author":[{"given":"Eman","family":"Badr","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lenwood S.","family":"Heath","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,9,4]]},"reference":[{"issue":"5","key":"698_CR1","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1038\/nrg2776","volume":"11","author":"H Keren","year":"2013","unstructured":"Keren H, Lev-Maor G, Ast G. Alternative splicing and evolution: Diversification, exon definition and function. Nat Rev Genet. 2013; 11(5):345\u201355. doi:\n                    10.1038\/nrg2776\n                    \n                  .","journal-title":"Nat Rev Genet"},{"issue":"6","key":"698_CR2","doi-asserted-by":"publisher","first-page":"855","DOI":"10.1089\/cmb.2012.0063","volume":"19","author":"J Zhang","year":"2012","unstructured":"Zhang J, Kuo CCJ, Chen L. VERSE: A varying effect regression for splicing elements discovery. J Comput Biol. 2012; 19(6):855\u201365. doi:\n                    10.1089\/cmb.2012.0063\n                    \n                  .","journal-title":"J Comput Biol"},{"issue":"1","key":"698_CR3","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1093\/bfgp\/els048","volume":"12","author":"E Buratti","year":"2013","unstructured":"Buratti E, Baralle M, Baralle FE. From single splicing events to thousands: The ambiguous step forward in splicing research. Brief Funct Genomics. 2013; 12(1):3\u201312. doi:\n                    10.1093\/bfgp\/els048\n                    \n                  .","journal-title":"Brief Funct Genomics"},{"issue":"22","key":"698_CR4","doi-asserted-by":"publisher","first-page":"7895","DOI":"10.1093\/nar\/gkq679","volume":"38","author":"J Wen","year":"2010","unstructured":"Wen J, Chiba A, Cai X. Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq. Nucleic Acids Res. 2010; 38(22):7895\u2013907. doi:\n                    10.1093\/nar\/gkq679\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 2","key":"698_CR5","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2164-13-S2-S1","volume":"13","author":"P Buendia","year":"2012","unstructured":"Buendia P, Tyree J, Loredo R, Hsu SN. Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species. BMC Genomics. 2012; 13(Suppl 2):1. doi:\n                    10.1186\/1471-2164-13-S2-S1\n                    \n                  .","journal-title":"BMC Genomics"},{"issue":"4","key":"698_CR6","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1016\/j.ygeno.2013.05.001","volume":"102","author":"Y Lv","year":"2013","unstructured":"Lv Y, Zuo Z, Xu X. Global detection and identification of developmental stage specific transcripts in mouse brain using subtractive cross-screening algorithm. Genomics. 2013; 102(4):229\u201336. doi:\n                    10.1016\/j.ygeno.2013.05.001\n                    \n                  .","journal-title":"Genomics"},{"issue":"9","key":"698_CR7","doi-asserted-by":"publisher","first-page":"439","DOI":"10.5483\/BMBRep.2013.46.9.161","volume":"46","author":"Z E","year":"2013","unstructured":"E Z, Wang L, Zhou J. Splicing and alternative splicing in rice and humans. BMB Rep. 2013; 46(9):439\u201347.","journal-title":"BMB Rep"},{"issue":"5","key":"698_CR8","doi-asserted-by":"publisher","first-page":"386","DOI":"10.1038\/nrm1645","volume":"6","author":"AJ Matlin","year":"2005","unstructured":"Matlin AJ, Clark F, Smith CWJ. Understanding alternative splicing: Towards a cellular code. Nat Rev Mol Cell Biol. 2005; 6(5):386\u201398. doi:\n                    10.1038\/nrm1645\n                    \n                  .","journal-title":"Nat Rev Mol Cell Biol"},{"issue":"Database issue","key":"698_CR9","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1093\/nar\/gks997","volume":"41","author":"M Giulietti","year":"2013","unstructured":"Giulietti M, Piva F, D\u2019Antonio M, D\u2019Onorio De Meo P, Paoletti D, Castrignano T, et al.SpliceAid-F: A database of human splicing factors and their RNA-binding sites. Nucleic Acids Res. 2013; 41(Database issue):125\u201331. doi:\n                    10.1093\/nar\/gks997\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"698_CR10","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1002\/humu.21609","volume":"33","author":"F Piva","year":"2012","unstructured":"Piva F, Giulietti M, Burini AB, Principato G. SpliceAid 2: A database of human splicing factors expression data and RNA target motifs. Hum Mutat. 2012; 33(1):81\u20135. doi:\n                    10.1002\/humu.21609\n                    \n                  .","journal-title":"Hum Mutat"},{"issue":"5","key":"698_CR11","doi-asserted-by":"publisher","first-page":"802","DOI":"10.1261\/rna.876308","volume":"14","author":"Z Wang","year":"2008","unstructured":"Wang Z, Burge CB. Splicing regulation: From a parts list of regulatory elements to an integrated splicing code. RNA. 2008; 14(5):802\u201313. doi:\n                    10.1261\/rna.876308.802\n                    \n                  .","journal-title":"RNA"},{"issue":"12","key":"698_CR12","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1093\/bioinformatics\/btq200","volume":"26","author":"Y Barash","year":"2010","unstructured":"Barash Y, Blencowe BJ, Frey BJ. Model-based detection of alternative splicing signals. Bioinformatics. 2010; 26(12):325\u201333. doi:\n                    10.1093\/bioinformatics\/btq200\n                    \n                  .","journal-title":"Bioinformatics"},{"issue":"Cv","key":"698_CR13","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1007\/978-0-387-77374-2_6","volume":"623","author":"LA Chasin","year":"2007","unstructured":"Chasin LA. Searching for splicing motifs. Adv Exp Med Biol. 2007; 623(Cv):85\u2013106.","journal-title":"Adv Exp Med Biol"},{"issue":"5648","key":"698_CR14","doi-asserted-by":"publisher","first-page":"1212","DOI":"10.1126\/science.1090095","volume":"302","author":"J Ule","year":"2003","unstructured":"Ule J, Jensen KB, Ruggiu M, Mele A, Ule A, Darnell RB. CLIP identifies Nova-regulated RNA networks in the brain. Science. 2003; 302(5648):1212\u20135. doi:\n                    10.1126\/science.1090095\n                    \n                  .","journal-title":"Science"},{"issue":"6","key":"698_CR15","doi-asserted-by":"publisher","first-page":"831","DOI":"10.1016\/j.cell.2004.11.010","volume":"119","author":"Z Wang","year":"2004","unstructured":"Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB. Systematic identification and analysis of exonic splicing silencers. Cell. 2004; 119(6):831\u201345. doi:\n                    10.1016\/j.cell.2004.11.010\n                    \n                  .","journal-title":"Cell"},{"issue":"5583","key":"698_CR16","doi-asserted-by":"publisher","first-page":"1007","DOI":"10.1126\/science.1073774","volume":"297","author":"WG Fairbrother","year":"2002","unstructured":"Fairbrother WG, Yeh RF, Sharp PA, Burge CB. Predictive identification of exonic splicing enhancers in human genes. Science. 2002; 297(5583):1007\u201313. doi:\n                    10.1126\/science.1073774\n                    \n                  .","journal-title":"Science"},{"issue":"7","key":"698_CR17","doi-asserted-by":"publisher","first-page":"1464","DOI":"10.1093\/nar\/29.7.1464","volume":"29","author":"A Fedorov","year":"2001","unstructured":"Fedorov A, Saxonov S, Fedorova L, Daizadeh I. Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers. Nucleic Acids Res. 2001; 29(7):1464\u20139.","journal-title":"Nucleic Acids Res"},{"key":"698_CR18","doi-asserted-by":"publisher","first-page":"159","DOI":"10.1186\/1471-2105-8-159","volume":"8","author":"M Pertea","year":"2007","unstructured":"Pertea M, Mount SM, Salzberg SL. A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana. BMC Bioinformatics. 2007; 8:159\u20139. doi:\n                    10.1186\/1471-2105-8-159\n                    \n                  .","journal-title":"BMC Bioinformatics"},{"issue":"12","key":"698_CR19","doi-asserted-by":"publisher","first-page":"2637","DOI":"10.1101\/gr.1679003","volume":"13","author":"XHF Zhang","year":"2003","unstructured":"Zhang XHF, Heller KA, Hefter I, Leslie CS, Chasin LA. Sequence information for the splicing of human pre-mRNA identified by support vector machine classification. Genome Res. 2003; 13(12):2637\u201350. doi:\n                    10.1101\/gr.1679003\n                    \n                  .","journal-title":"Genome Res"},{"issue":"12","key":"698_CR20","doi-asserted-by":"publisher","first-page":"880","DOI":"10.1089\/cmb.2014.0183","volume":"21","author":"E Badr","year":"2014","unstructured":"Badr E, Heath LS. Identifying splicing regulatory elements with de Bruijn graphs. J Comput Biol. 2014; 21(12):880\u201397. doi:\n                    10.1089\/cmb.2014.0183\n                    \n                  .","journal-title":"J Comput Biol"},{"key":"698_CR21","first-page":"260","volume":"5542","author":"J Kim","year":"2009","unstructured":"Kim J, Zhao S, Howard BE, Heber S. Mining of cis-regulatory motifs associated with tissue-specific alternative splicing. Springer. 2009; 5542:260\u201371.","journal-title":"Springer"},{"issue":"16","key":"698_CR22","doi-asserted-by":"publisher","first-page":"7323","DOI":"10.1128\/MCB.25.16.7323-7332.2005","volume":"25","author":"XH Zhang","year":"1979","unstructured":"Zhang XH, Kangsamaksin T, Mann SP, Banerjee JK, Chasin LA, Chao MSP. Exon inclusion is dependent on predictable exonic splicing enhancers. Mol Cell Biol. 1979; 25(16):7323\u201332. doi:\n                    10.1128\/MCB.25.16.7323\n                    \n                  .","journal-title":"Mol Cell Biol"},{"issue":"5","key":"698_CR23","doi-asserted-by":"publisher","first-page":"550","DOI":"10.1002\/wsbm.84","volume":"2","author":"X Xiao","year":"2010","unstructured":"Xiao X, Lee JH. Systems analysis of alternative splicing and its regulation. Wiley Interdiscip Rev Syst Biol Med. 2010; 2(5):550\u201365. doi:\n                    10.1002\/wsbm.84\n                    \n                  .","journal-title":"Wiley Interdiscip Rev Syst Biol Med"},{"issue":"1","key":"698_CR24","doi-asserted-by":"publisher","first-page":"54885","DOI":"10.1371\/journal.pone.0054885","volume":"8","author":"J Wen","year":"2013","unstructured":"Wen J, Chen Z, Cai X. A biophysical model for identifying splicing regulatory elements and their interactions. PLoS One. 2013; 8(1):54885. doi:\n                    10.1371\/journal.pone.0054885\n                    \n                  .","journal-title":"PLoS One"},{"issue":"8","key":"698_CR25","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1186\/gb-2010-11-8-r84","volume":"11","author":"S Ke","year":"2010","unstructured":"Ke S, Chasin LA. Intronic motif pairs cooperate across exons to promote pre-mRNA splicing. Genome Biol. 2010; 11(8):84. doi:\n                    10.1186\/gb-2010-11-8-r84\n                    \n                  .","journal-title":"Genome Biol"},{"issue":"10","key":"698_CR26","doi-asserted-by":"publisher","first-page":"1643","DOI":"10.1101\/gr.080085.108","volume":"18","author":"BA Friedman","year":"2008","unstructured":"Friedman BA, Stadler MB, Shomron N, Ding Y, Burge CB. Ab initio identification of functionally interacting pairs of cis-regulatory elements. Genome Res. 2008; 18(10):1643\u201351. doi:\n                    10.1101\/gr.080085.108\n                    \n                  .","journal-title":"Genome Res"},{"issue":"22","key":"698_CR27","doi-asserted-by":"publisher","first-page":"7916","DOI":"10.1093\/nar\/gkq705","volume":"38","author":"M Suyama","year":"2010","unstructured":"Suyama M, Harrington ED, Vinokourova S, von Knebel Doeberitz M, Ohara O, Bork P. A network of conserved co-occurring motifs for the regulation of alternative splicing. Nucleic Acids Res. 2010; 38(22):7916\u201326. doi:\n                    10.1093\/nar\/gkq705\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"key":"698_CR28","volume-title":"Introduction to Automata Theory, Languages, and Computation","author":"JE Hopcroft","year":"1979","unstructured":"Hopcroft JE, Ullman JD. Introduction to Automata Theory, Languages, and Computation. Reading, Massachusetts: Addison-Wesley Publishing Company; 1979."},{"key":"698_CR29","volume-title":"Graph Separators, With Applications","author":"AL Rosenberg","year":"2000","unstructured":"Rosenberg AL, Heath LS. Graph Separators, With Applications. New york, United States: Kluwer Academic\/Plenum Publishers; 2000."},{"issue":"8","key":"698_CR30","doi-asserted-by":"publisher","first-page":"1360","DOI":"10.1101\/gr.119628.110","volume":"21","author":"S Ke","year":"2011","unstructured":"Ke S, Shang S, Kalachikov SM, Morozova I, Yu L, Russo JJ, et al.Quantitative evaluation of all hexamers as exonic splicing elements. Genome Res. 2011; 21(8):1360\u20131374. doi:\n                    10.1101\/gr.119628.110\n                    \n                  .","journal-title":"Genome Res"},{"issue":"Database issue","key":"698_CR31","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1093\/nar\/gkh103","volume":"32","author":"D Karolchik","year":"2004","unstructured":"Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, et al.The UCSC table browser data retrieval tool. Nucleic Acids Res. 2004; 32(Database issue):493\u20136. doi:\n                    10.1093\/nar\/gkh103\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"698_CR32","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1093\/nar\/gkj031","volume":"34","author":"S Stamm","year":"2006","unstructured":"Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, et al.ASD: A bioinformatics resource on alternative splicing. Nucleic Acids Res. 2006; 34(Database issue):46\u201355. doi:\n                    10.1093\/nar\/gkj031\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"issue":"11","key":"698_CR33","doi-asserted-by":"publisher","first-page":"1241","DOI":"10.1101\/gad.1195304","volume":"18","author":"XHF Zhang","year":"2004","unstructured":"Zhang XHF, Chasin LA. Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev. 2004; 18(11):1241\u20131250. doi:\n                    10.1101\/gad.1195304\n                    \n                  .","journal-title":"Genes Dev"},{"issue":"3","key":"698_CR34","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1007\/s12539-013-0168-7","volume":"5","author":"R Alroobi","year":"2013","unstructured":"Alroobi R, Ahmed S, Salem S. Mining maximal cohesive induced subnetworks and patterns by integrating biological networks with gene profile data. Interdiscip Sci. 2013; 5(3):211\u20134. doi:\n                    10.1007\/s12539-013-0168-7\n                    \n                  .","journal-title":"Interdiscip Sci"},{"key":"698_CR35","doi-asserted-by":"crossref","unstructured":"Bayardo Jr RJ. Efficiently mining long patterns from databases. In: ACM Sigmod Record. New York, USA: 1998. p. 85\u201393. ACM.","DOI":"10.1145\/276305.276313"},{"issue":"13","key":"698_CR36","doi-asserted-by":"publisher","first-page":"3568","DOI":"10.1093\/nar\/gkg616","volume":"31","author":"L Cartegni","year":"2003","unstructured":"Cartegni L. ESEfinder: A web resource to identify exonic splicing enhancers. Nucleic Acids Res. 2003; 31(13):3568\u2013571. doi:\n                    10.1093\/nar\/gkg616\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"issue":"9","key":"698_CR37","first-page":"1","volume":"37","author":"D Hamroun","year":"2009","unstructured":"Hamroun D, Lalande M. Human Splicing Finder : An online bioinformatics tool to predict splicing signals. Nucleic Acids Res. 2009; 37(9):1\u201314. doi:\n                    10.1093\/nar\/gkp215\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"key":"698_CR38","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1016\/0092-8674(92)90477-T","volume":"68","author":"A Mayeda","year":"1992","unstructured":"Mayeda A, Krainer A. Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2. Cell. 1992; 68:365\u201375.","journal-title":"Cell"},{"key":"698_CR39","first-page":"430","volume":"4","author":"A Hanamura","year":"1998","unstructured":"Hanamura A, C\u00e1ceres JF, Mayeda A, Jr BRF, Krainer AR. Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. RNA. 1998; 4:430\u201344.","journal-title":"RNA"},{"key":"698_CR40","doi-asserted-by":"publisher","first-page":"1351","DOI":"10.1016\/S1097-2765(01)00409-9","volume":"8","author":"J Zhu","year":"2001","unstructured":"Zhu J, Mayeda A, Krainer A. Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Mol Cell. 2001; 8:1351\u201361.","journal-title":"Mol Cell"},{"issue":"5","key":"698_CR41","doi-asserted-by":"publisher","first-page":"2993","DOI":"10.1128\/MCB.13.5.2993","volume":"13","author":"A Mayeda","year":"1993","unstructured":"Mayeda A, Helfman DM, Krainer AR. Modulation of exon skipping and inclusion by heterogeneous nuclear ribonucleoprotein Al and pre-mRNA splicing factor SF2 \/ ASF. Mol Cell Biol. 1993; 13(5):2993\u20133001. doi:\n                    10.1128\/MCB.13.5.2993.Updated\n                    \n                  .","journal-title":"Mol Cell Biol"},{"issue":"18","key":"698_CR42","doi-asserted-by":"publisher","first-page":"2385","DOI":"10.1093\/bioinformatics\/bts452","volume":"28","author":"MC Ryan","year":"2012","unstructured":"Ryan MC, Cleland J, Kim R, Wong WC, Weinstein N. SpliceSeq: A resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts. Bioinformatics. 2012; 28(18):2385\u2013387. doi:\n                    10.1093\/bioinformatics\/bts452\n                    \n                  .","journal-title":"Bioinformatics"},{"key":"698_CR43","doi-asserted-by":"crossref","unstructured":"He C, Zhou F, Zuo Z, Cheng H, Zhou R. A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis. PLoS One. 2009;4(3). doi:\n                    10.1371\/journal.pone.0004732\n                    \n                  .","DOI":"10.1371\/journal.pone.0004732"},{"issue":"14","key":"698_CR44","doi-asserted-by":"publisher","first-page":"1650","DOI":"10.1093\/bioinformatics\/btn250","volume":"24","author":"S Bauer","year":"2008","unstructured":"Bauer S, Grossmann S, Vingron M, Robinson PN. Ontologizer 2.0\u2013 A multifunctional tool for GO term enrichment analysis and data exploration. Bioinformatics. 2008; 24(14):1650\u20131651. doi:\n                    10.1093\/bioinformatics\/btn250\n                    \n                  .","journal-title":"Bioinformatics"},{"key":"698_CR45","first-page":"2665","volume":"9","author":"S Rodenhuis","year":"1992","unstructured":"Rodenhuis S, Slebos R. Clinical significance of ras oncogene activation in human lung cancer. Cancer Res. 1992; 9:2665\u2013669.","journal-title":"Cancer Res"},{"issue":"3","key":"698_CR46","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1634\/theoncologist.4-3-263","volume":"4","author":"DS Goodsell","year":"1999","unstructured":"Goodsell DS. The molecular perspective: The ras oncogene. The Oncologist. 1999; 4(3):263\u20134. \n                    http:\/\/theoncologist.alphamedpress.org\/content\/4\/3\/263.full.pdf+html\n                    \n                  .","journal-title":"The Oncologist"},{"issue":"1","key":"698_CR47","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1038\/nrc969","volume":"3","author":"J Downward","year":"2003","unstructured":"Downward J. Targeting RAS signalling pathways in cancer therapy. Nat Rev Cancer. 2003; 3(1):11\u201322. doi:\n                    10.1038\/nrc969\n                    \n                  .","journal-title":"Nat Rev Cancer"},{"issue":"Database issue","key":"698_CR48","doi-asserted-by":"publisher","first-page":"48","DOI":"10.1093\/nar\/gks1236","volume":"41","author":"P Flicek","year":"2013","unstructured":"Flicek P, Ahmed I, Amode MR, Barrell D, Beal K, Brent S, et al.Ensembl 2013. Nucleic Acids Res. 2013; 41(Database issue):48\u201355. doi:\n                    10.1093\/nar\/gks1236\n                    \n                  .","journal-title":"Nucleic Acids Res."},{"issue":"10","key":"698_CR49","doi-asserted-by":"publisher","first-page":"2008","DOI":"10.1101\/gr.133744.111","volume":"22","author":"S Anders","year":"2012","unstructured":"Anders S, Reyes A, Huber W. Detecting differential usage of exons from RNA-seq data. Genome Res. 2012; 22(10):2008\u201317. doi:\n                    10.1101\/gr.133744.111\n                    \n                  .","journal-title":"Genome Res"},{"issue":"10","key":"698_CR50","doi-asserted-by":"publisher","first-page":"3318","DOI":"10.1093\/nar\/gkq005","volume":"38","author":"A Goren","year":"2010","unstructured":"Goren A, Kim E, Amit M, Vaknin K, Kfir N, Ram O, et al.Overlapping splicing regulatory motifs\u2013combinatorial effects on splicing. Nucleic Acids Res. 2010; 38(10):3318\u201327. doi:\n                    10.1093\/nar\/gkq005\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"key":"698_CR51","volume-title":"Aartsma-Rus, A. (ed.) Exon Skipping","author":"J Wan","year":"2012","unstructured":"Wan J. Antisense-mediated exon skipping to shift alternative splicing to treat cancer. In: Aartsma-Rus, A. (ed.) Exon Skipping. New york, United States: Humana Press: 2012. p. 201\u20138."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0698-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12859-015-0698-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0698-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,15]],"date-time":"2020-05-15T20:14:40Z","timestamp":1589573680000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0698-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,9,4]]},"references-count":51,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["698"],"URL":"https:\/\/doi.org\/10.1186\/s12859-015-0698-6","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,9,4]]},"assertion":[{"value":"29 April 2015","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 August 2015","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 September 2015","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"285"}}