{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,18]],"date-time":"2026-05-18T17:50:19Z","timestamp":1779126619667,"version":"3.51.4"},"reference-count":63,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,10,5]],"date-time":"2015-10-05T00:00:00Z","timestamp":1444003200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/s12859-015-0755-1","type":"journal-article","created":{"date-parts":[[2015,10,5]],"date-time":"2015-10-05T11:35:21Z","timestamp":1444044921000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":16,"title":["Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms"],"prefix":"10.1186","volume":"16","author":[{"given":"Mohieddin","family":"Jafari","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mehdi","family":"Mirzaie","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mehdi","family":"Sadeghi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,10,5]]},"reference":[{"issue":"1","key":"755_CR1","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1038\/nphys2188","volume":"8","author":"AL Barab\u00e1si","year":"2011","unstructured":"Barab\u00e1si AL. The network takeover. Nat Phys. 2011;8(1):14\u20136.","journal-title":"Nat Phys"},{"key":"755_CR2","volume-title":"From proteins and their interactions to evolutionary principles of biological systems. Universit\u00e9 Joseph Fourier","author":"AR Carvunis","year":"2011","unstructured":"Carvunis AR. From proteins and their interactions to evolutionary principles of biological systems. Universit\u00e9 Joseph Fourier. 2011."},{"issue":"1","key":"755_CR3","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1016\/j.mbs.2012.06.002","volume":"240","author":"J Hou","year":"2012","unstructured":"Hou J, Chi X. Predicting protein functions from PPI networks using functional aggregation. Math Biosci. 2012;240(1):63\u20139.","journal-title":"Math Biosci"},{"issue":"9","key":"755_CR4","doi-asserted-by":"publisher","first-page":"1308","DOI":"10.1038\/nprot.2011.368","volume":"6","author":"R Srivas","year":"2011","unstructured":"Srivas R, Hannum G, Ruscheinski J, Ono K, Wang P-L, Smoot M, et al. Assembling global maps of cellular function through integrative analysis of physical and genetic networks. Nat Protoc. 2011;6(9):1308\u201323.","journal-title":"Nat Protoc"},{"issue":"4","key":"755_CR5","doi-asserted-by":"publisher","first-page":"e1000065","DOI":"10.1371\/journal.pcbi.1000065","volume":"4","author":"S Bandyopadhyay","year":"2008","unstructured":"Bandyopadhyay S, Kelley R, Krogan NJ, Ideker T. Functional maps of protein complexes from quantitative genetic interaction data. PLoS Comput Biol. 2008;4(4):e1000065.","journal-title":"PLoS Comput Biol"},{"issue":"1","key":"755_CR6","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1038\/msb4100129","volume":"3","author":"R Sharan","year":"2007","unstructured":"Sharan R, Ulitsky I, Shamir R. Network-based prediction of protein function. Mol Syst Biol. 2007;3(1):88.","journal-title":"Mol Syst Biol"},{"issue":"4","key":"755_CR7","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1038\/nbt1196","volume":"24","author":"R Sharan","year":"2006","unstructured":"Sharan R, Ideker T. Modeling cellular machinery through biological network comparison. Nat Biotechnol. 2006;24(4):427\u201333.","journal-title":"Nat Biotechnol"},{"issue":"5","key":"755_CR8","doi-asserted-by":"publisher","first-page":"605","DOI":"10.1093\/bioinformatics\/btl683","volume":"23","author":"ME Futschik","year":"2007","unstructured":"Futschik ME, Chaurasia G, Herzel H. Comparison of human protein\u2013protein interaction maps. Bioinformatics. 2007;23(5):605\u201311.","journal-title":"Bioinformatics"},{"key":"755_CR9","volume-title":"Biomolecular networks methods and applications in systems biology","author":"C Luonan","year":"2009","unstructured":"Luonan C, Rui-Sheng W, Xiang-Sun Z. Biomolecular networks methods and applications in systems biology. USA: John Wiley and Sons, Inc; 2009."},{"issue":"1","key":"755_CR10","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1038\/nmeth.1281","volume":"6","author":"P Braun","year":"2009","unstructured":"Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, et al. An experimentally derived confidence score for binary protein-protein interactions. Nat Methods. 2009;6(1):91\u20137.","journal-title":"Nat Methods"},{"key":"755_CR11","volume-title":"Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches. Cellular and Molecular Life Sciences: CMLS","author":"AG Ngounou Wetie","year":"2013","unstructured":"Ngounou Wetie AG, Sokolowska I, Woods AG, Roy U, Deinhardt K, Darie CC. Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches. Cellular and Molecular Life Sciences: CMLS. 2013."},{"key":"755_CR12","volume-title":"Analysis of biological networks","author":"BH Junker","year":"2007","unstructured":"Junker BH, Schreiber F. Analysis of biological networks. USA: Wiley; 2007."},{"issue":"4","key":"755_CR13","doi-asserted-by":"publisher","first-page":"200","DOI":"10.5808\/GI.2013.11.4.200","volume":"11","author":"D Yu","year":"2013","unstructured":"Yu D, Kim M, Xiao G, Hwang TH. Review of biological network data and its applications. Genomics Inform. 2013;11(4):200\u201310.","journal-title":"Genomics Inform"},{"issue":"2","key":"755_CR14","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1038\/ng1003-118","volume":"35","author":"A Vespignani","year":"2003","unstructured":"Vespignani A. Evolution thinks modular. Nat Genet. 2003;35(2):118\u20139.","journal-title":"Nat Genet"},{"issue":"6761 Suppl","key":"755_CR15","doi-asserted-by":"publisher","first-page":"C47","DOI":"10.1038\/35011540","volume":"402","author":"LH Hartwell","year":"1999","unstructured":"Hartwell LH, Hopfield JJ, Leibler S, Murray AW. From molecular to modular cell biology. Nature. 1999;402(6761 Suppl):C47\u201352.","journal-title":"Nature"},{"issue":"10","key":"755_CR16","doi-asserted-by":"publisher","first-page":"1343","DOI":"10.1093\/bioinformatics\/btu034","volume":"30","author":"C Pizzuti","year":"2014","unstructured":"Pizzuti C, Rombo SE. Algorithms and tools for protein-protein interaction networks clustering, with a special focus on population-based stochastic methods. Bioinformatics. 2014;30(10):1343\u201352.","journal-title":"Bioinformatics"},{"issue":"18","key":"755_CR17","doi-asserted-by":"publisher","first-page":"3251","DOI":"10.1103\/PhysRevLett.76.3251","volume":"76","author":"M Blatt","year":"1996","unstructured":"Blatt M, Wiseman S, Domany E. Superparamagnetic clustering of data. Phys Rev Lett. 1996;76(18):3251\u20134.","journal-title":"Phys Rev Lett"},{"issue":"4-6","key":"755_CR18","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1016\/S0020-0190(00)00142-3","volume":"76","author":"E Hartuv","year":"2000","unstructured":"Hartuv E, Shamir R. A clustering algorithm based on graph connectivity. Inf Process Lett. 2000;76(4-6):175\u201381.","journal-title":"Inf Process Lett"},{"issue":"7","key":"755_CR19","doi-asserted-by":"publisher","first-page":"1575","DOI":"10.1093\/nar\/30.7.1575","volume":"30","author":"AJ Enright","year":"2002","unstructured":"Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 2002;30(7):1575\u201384.","journal-title":"Nucleic Acids Res"},{"issue":"17","key":"755_CR20","doi-asserted-by":"publisher","first-page":"3013","DOI":"10.1093\/bioinformatics\/bth351","volume":"20","author":"AD King","year":"2004","unstructured":"King AD, Przulj N, Jurisica I. Protein complex prediction via cost-based clustering. Bioinformatics. 2004;20(17):3013\u201320.","journal-title":"Bioinformatics"},{"issue":"3","key":"755_CR21","doi-asserted-by":"publisher","first-page":"364","DOI":"10.1093\/bioinformatics\/bti021","volume":"21","author":"V Arnau","year":"2005","unstructured":"Arnau V, Mars S, Mar\u00edn I. Iterative cluster analysis of protein interaction data. Bioinformatics. 2005;21(3):364\u201378.","journal-title":"Bioinformatics"},{"issue":"6","key":"755_CR22","doi-asserted-by":"publisher","first-page":"697","DOI":"10.1038\/nbt825","volume":"21","author":"A Vazquez","year":"2003","unstructured":"Vazquez A, Flammini A, Maritan A, Vespignani A. Global protein function prediction from protein-protein interaction networks. Nat Biotechnol. 2003;21(6):697\u2013700.","journal-title":"Nat Biotechnol"},{"key":"755_CR23","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1186\/1471-2105-7-207","volume":"7","author":"M Altaf-Ul-Amin","year":"2006","unstructured":"Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S. Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics. 2006;7:207.","journal-title":"BMC Bioinformatics"},{"issue":"3","key":"755_CR24","doi-asserted-by":"publisher","first-page":"1128","DOI":"10.1073\/pnas.0237338100","volume":"100","author":"AW Rives","year":"2003","unstructured":"Rives AW, Galitski T. Modular organization of cellular networks. Proc Natl Acad Sci U S A. 2003;100(3):1128\u201333.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"755_CR25","doi-asserted-by":"publisher","first-page":"2006.0003","DOI":"10.1038\/msb4100045","volume":"2","author":"K Maciag","year":"2006","unstructured":"Maciag K, Altschuler SJ, Slack MD, Krogan NJ, Emili A, Greenblatt JF, et al. Systems-level analyses identify extensive coupling among gene expression machines. Mol Syst Biol. 2006;2:2006.0003.","journal-title":"Mol Syst Biol"},{"issue":"22","key":"755_CR26","doi-asserted-by":"publisher","first-page":"12579","DOI":"10.1073\/pnas.2132527100","volume":"100","author":"MP Samanta","year":"2003","unstructured":"Samanta MP, Liang S. Predicting protein functions from redundancies in large-scale protein interaction networks. Proc Natl Acad Sci U S A. 2003;100(22):12579\u201383.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"755_CR27","doi-asserted-by":"publisher","first-page":"041908","DOI":"10.1103\/PhysRevE.67.041908","volume":"67","author":"H Zhou","year":"2003","unstructured":"Zhou H. Network landscape from a Brownian particle\u2019s perspective. Phys Rev E. 2003;67:041908.","journal-title":"Phys Rev E"},{"issue":"1","key":"755_CR28","doi-asserted-by":"publisher","first-page":"248","DOI":"10.1093\/nar\/gkg056","volume":"31","author":"GD Bader","year":"2003","unstructured":"Bader GD, Betel D, Hogue CWV. Bind: the biomolecular interaction network database. Nucleic Acids Res. 2003;31(1):248\u201350.","journal-title":"Nucleic Acids Res"},{"issue":"21","key":"755_CR29","doi-asserted-by":"publisher","first-page":"12123","DOI":"10.1073\/pnas.2032324100","volume":"100","author":"V Spirin","year":"2003","unstructured":"Spirin V, Mirny LA. Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci U S A. 2003;100(21):12123\u20138.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"755_CR30","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1186\/1471-2105-6-39","volume":"6","author":"R Dunn","year":"2005","unstructured":"Dunn R, Dudbridge F, Sanderson CM. The use of edge-betweenness clustering to investigate biological function in protein interaction networks. BMC Bioinformatics. 2005;6:39.","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"755_CR31","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1002\/prot.10505","volume":"54","author":"JB Pereira-Leal","year":"2004","unstructured":"Pereira-Leal JB, Enright AJ, Ouzounis CA. Detection of functional modules from protein interaction networks. Proteins. 2004;54(1):49\u201357.","journal-title":"Proteins"},{"key":"755_CR32","doi-asserted-by":"publisher","first-page":"488","DOI":"10.1186\/1471-2105-7-488","volume":"7","author":"S Broh\u00e9e","year":"2006","unstructured":"Broh\u00e9e S, van Helden J. Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics. 2006;7:488.","journal-title":"BMC Bioinformatics"},{"issue":"Database issue","key":"755_CR33","doi-asserted-by":"publisher","first-page":"D220","DOI":"10.1093\/nar\/gkq1157","volume":"39","author":"HW Mewes","year":"2011","unstructured":"Mewes HW, Ruepp A, Theis F, Rattei T, Walter M, Frishman D, et al. MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 2011;39(Database issue):D220\u20134.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"755_CR34","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1093\/nar\/30.1.31","volume":"30","author":"HW Mewes","year":"2002","unstructured":"Mewes HW, Frishman D, G\u00fcldener U, Mannhaupt G, Mayer K, Mokrejs M, et al. MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 2002;30(1):31\u20134.","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"755_CR35","first-page":"D196","volume":"36","author":"HW Mewes","year":"2008","unstructured":"Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KFX, et al. MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Res. 2008;36(Database issue):D196\u2013201.","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"755_CR36","doi-asserted-by":"publisher","first-page":"e107","DOI":"10.1371\/journal.pcbi.0030107","volume":"3","author":"Z Wang","year":"2007","unstructured":"Wang Z, Zhang J. In search of the biological significance of modular structures in protein networks. PLoS Comput Biol. 2007;3(6):e107.","journal-title":"PLoS Comput Biol"},{"issue":"9","key":"755_CR37","doi-asserted-by":"publisher","first-page":"1239","DOI":"10.1093\/bioinformatics\/bts119","volume":"28","author":"HTT Phan","year":"2012","unstructured":"Phan HTT, Sternberg MJE. PINALOG: a novel approach to align protein interaction networks\u2013implications for complex detection and function prediction. Bioinformatics. 2012;28(9):1239\u201345.","journal-title":"Bioinformatics"},{"issue":"1","key":"755_CR38","first-page":"25","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. Gene ontology: tool for the unification of biology. Gene. 2000;25(1):25\u20139.","journal-title":"Gene"},{"issue":"4","key":"755_CR39","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1109\/TCBB.2005.50","volume":"2","author":"JL Sevilla","year":"2005","unstructured":"Sevilla JL, Segura V, Podhorski A, Guruceaga E, Mato JM, Mart\u00ednez-Cruz LA, et al. Correlation between gene expression and GO semantic similarity. IEEE ACM Trans Comput Biol Bioinformatics. 2005;2(4):330\u20138.","journal-title":"IEEE ACM Trans Comput Biol Bioinformatics"},{"issue":"10","key":"755_CR40","doi-asserted-by":"publisher","first-page":"1275","DOI":"10.1093\/bioinformatics\/btg153","volume":"19","author":"PW Lord","year":"2003","unstructured":"Lord PW, Stevens RD, Brass A, Goble CA. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics. 2003;19(10):1275\u201383.","journal-title":"Bioinformatics"},{"issue":"6","key":"755_CR41","doi-asserted-by":"publisher","first-page":"723","DOI":"10.1093\/bib\/bbr002","volume":"12","author":"L Plessis du","year":"2011","unstructured":"du Plessis L, Skunca N, Dessimoz C. The what, where, how and why of gene ontology\u2013a primer for bioinformaticians. Brief Bioinform. 2011;12(6):723\u201335.","journal-title":"Brief Bioinform"},{"key":"755_CR42","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1186\/1471-2105-8-265","volume":"8","author":"YR Cho","year":"2007","unstructured":"Cho YR, Hwang W, Ramanathan M, Zhang A. Semantic integration to identify overlapping functional modules in protein interaction networks. BMC Bioinformatics. 2007;8:265.","journal-title":"BMC Bioinformatics"},{"issue":"4","key":"755_CR43","doi-asserted-by":"publisher","first-page":"e5313","DOI":"10.1371\/journal.pone.0005313","volume":"4","author":"D Dotan-Cohen","year":"2009","unstructured":"Dotan-Cohen D, Letovsky S, Melkman AA, Kasif S. Biological process linkage networks. PLoS One. 2009;4(4):e5313.","journal-title":"PLoS One"},{"issue":"1","key":"755_CR44","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1186\/1752-0509-6-44","volume":"6","author":"D Luciani","year":"2012","unstructured":"Luciani D, Bazzoni G. From networks of protein interactions to networks of functional dependencies. BMC Syst Biol. 2012;6(1):44.","journal-title":"BMC Syst Biol"},{"issue":"18","key":"755_CR45","doi-asserted-by":"publisher","first-page":"3587","DOI":"10.1093\/bioinformatics\/bti565","volume":"21","author":"P Khatri","year":"2005","unstructured":"Khatri P, Dr\u0103ghici S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics. 2005;21(18):3587\u201395.","journal-title":"Bioinformatics"},{"issue":"6","key":"755_CR46","doi-asserted-by":"publisher","first-page":"668","DOI":"10.1016\/j.mito.2013.09.006","volume":"13","author":"M Jafari","year":"2013","unstructured":"Jafari M, Sadeghi M, Mirzaie M, Marashi SA, Rezaei-Tavirani M. Evolutionary conserved motifs and modules in mitochondrial protein interaction network. Mitochondrion. 2013;13(6):668.","journal-title":"Mitochondrion"},{"issue":"7028","key":"755_CR47","doi-asserted-by":"publisher","first-page":"895","DOI":"10.1038\/nature03288","volume":"433","author":"R Guimer\u00e0","year":"2005","unstructured":"Guimer\u00e0 R, Nunes Amaral LA. Functional cartography of complex metabolic networks. Nature. 2005;433(7028):895\u2013900.","journal-title":"Nature"},{"key":"755_CR48","doi-asserted-by":"publisher","first-page":"P10008","DOI":"10.1088\/1742-5468\/2008\/10\/P10008","volume":"10","author":"VD Blondel","year":"2008","unstructured":"Blondel VD, Guillaume JL, Lambiotte R, Lefebvre E. Fast unfolding of communities in large networks. J Stat Mech Theor Exp. 2008;10:P10008.","journal-title":"J Stat Mech Theor Exp"},{"issue":"3","key":"755_CR49","doi-asserted-by":"publisher","first-page":"030101","DOI":"10.1103\/PhysRevE.75.030101","volume":"75","author":"R Lambiotte","year":"2007","unstructured":"Lambiotte R, Ausloos M, Ho\u0142yst JA. Majority model on a network with communities. Phys Rev E. 2007;75(3):030101.","journal-title":"Phys Rev E"},{"issue":"16","key":"755_CR50","doi-asserted-by":"publisher","first-page":"2516","DOI":"10.1002\/elps.201200031","volume":"33","author":"M Jafari","year":"2012","unstructured":"Jafari M, Primo V, Smejkal GB, Moskovets EV, Kuo WP, Ivanov AR. Comparison of in-gel protein separation techniques commonly used for fractionation in mass spectrometry-based proteomic profiling. Electrophoresis. 2012;33(16):2516\u201326.","journal-title":"Electrophoresis"},{"key":"755_CR51","doi-asserted-by":"crossref","DOI":"10.1002\/9780470488065","volume-title":"Biomolecular networks: methods and applications in systems biology: Wiley","author":"L Chen","year":"2009","unstructured":"Chen L, Wang RS, Zhang XS. Biomolecular networks: methods and applications in systems biology: Wiley. 2009."},{"key":"755_CR52","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511626593","volume-title":"Protein interaction networks: computational analysis: Cambridge University Press","author":"A Zhang","year":"2009","unstructured":"Zhang A. Protein interaction networks: computational analysis: Cambridge University Press. 2009."},{"issue":"5644","key":"755_CR53","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1126\/science.1087361","volume":"302","author":"R Jansen","year":"2003","unstructured":"Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science. 2003;302(5644):449\u201353.","journal-title":"Science"},{"issue":"11","key":"755_CR54","doi-asserted-by":"publisher","first-page":"1370","DOI":"10.1109\/TKDE.2004.68","volume":"16","author":"D Jiang","year":"2004","unstructured":"Jiang D, Tang C, Zhang A. Cluster analysis for gene expression data: a survey. IEEE Trans Knowl Data Eng. 2004;16(11):1370\u201386.","journal-title":"IEEE Trans Knowl Data Eng"},{"issue":"7","key":"755_CR55","doi-asserted-by":"publisher","first-page":"833","DOI":"10.1016\/j.patrec.2006.11.010","volume":"28","author":"RJGB Campello","year":"2007","unstructured":"Campello RJGB. A fuzzy extension of the Rand index and other related indexes for clustering and classification assessment. Pattern Recogn Lett. 2007;28(7):833\u201341.","journal-title":"Pattern Recogn Lett"},{"key":"755_CR56","volume-title":"Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool","author":"EY Chen","year":"2013","unstructured":"Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. 2013."},{"issue":"1","key":"755_CR57","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1093\/nar\/28.1.27","volume":"28","author":"M Kanehisa","year":"2000","unstructured":"Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28(1):27\u201330.","journal-title":"Nucleic Acids Res"},{"issue":"D1","key":"755_CR58","doi-asserted-by":"publisher","first-page":"472","DOI":"10.1093\/nar\/gkt1102","volume":"42","author":"D Croft","year":"2014","unstructured":"Croft D, Mundo AF, Haw R, Milacic M, Weiser J, Wu G, et al. The Reactome pathway knowledgebase. Nucleic Acids Res. 2014;42(D1):472\u20137.","journal-title":"Nucleic Acids Res"},{"issue":"10","key":"755_CR59","doi-asserted-by":"publisher","first-page":"2401","DOI":"10.1039\/c3mb70242a","volume":"9","author":"P Tieri","year":"2013","unstructured":"Tieri P, Nardini C. Signalling pathway database usability: lessons learned. Mol BioSyst. 2013;9(10):2401\u20137.","journal-title":"Mol BioSyst"},{"issue":"Database issue","key":"755_CR60","doi-asserted-by":"publisher","first-page":"D433","DOI":"10.1093\/nar\/gki005","volume":"33","author":"C Mering von","year":"2005","unstructured":"von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, et al. STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 2005;33(Database issue):D433\u20137.","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"755_CR61","doi-asserted-by":"publisher","first-page":"D561","DOI":"10.1093\/nar\/gkq973","volume":"39","author":"D Szklarczyk","year":"2011","unstructured":"Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 2011;39(Database issue):D561\u20138.","journal-title":"Nucleic Acids Res"},{"key":"755_CR62","doi-asserted-by":"publisher","first-page":"125","DOI":"10.2307\/4444260","volume":"35","author":"T Dobzhansky","year":"1973","unstructured":"Dobzhansky T. Nothing in biology makes sense except in the light of evolution. Am Biol Teach. 1973;35:125\u20139.","journal-title":"Am Biol Teach"},{"issue":"Database issue","key":"755_CR63","doi-asserted-by":"publisher","first-page":"D187","DOI":"10.1093\/nar\/gkj161","volume":"34","author":"CH Wu","year":"2006","unstructured":"Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 2006;34(Database issue):D187.","journal-title":"Nucleic Acids Res"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0755-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12859-015-0755-1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0755-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,8,14]],"date-time":"2023-08-14T22:56:26Z","timestamp":1692053786000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0755-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,10,5]]},"references-count":63,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["755"],"URL":"https:\/\/doi.org\/10.1186\/s12859-015-0755-1","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,10,5]]},"article-number":"319"}}