{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,15]],"date-time":"2026-05-15T10:20:59Z","timestamp":1778840459562,"version":"3.51.4"},"reference-count":26,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,10,24]],"date-time":"2015-10-24T00:00:00Z","timestamp":1445644800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100002855","name":"Ministry of Science and Technology of the People's Republic of China","doi-asserted-by":"publisher","award":["2012CB114505"],"award-info":[{"award-number":["2012CB114505"]}],"id":[{"id":"10.13039\/501100002855","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"the National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["31270702 and 31070592"],"award-info":[{"award-number":["31270702 and 31070592"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1186\/s12859-015-0790-y","type":"journal-article","created":{"date-parts":[[2015,10,24]],"date-time":"2015-10-24T01:30:54Z","timestamp":1445650254000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["DiSNPindel: improved intra-individual SNP and InDel detection in direct amplicon sequencing of a diploid"],"prefix":"10.1186","volume":"16","author":[{"given":"Jizhong","family":"Deng","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Huasheng","family":"Huang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaoli","family":"Yu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ji","family":"Jin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Weisen","family":"Lin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fagen","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhijiao","family":"Song","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mei","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Siming","family":"Gan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,10,24]]},"reference":[{"key":"790_CR1","doi-asserted-by":"publisher","first-page":"930","DOI":"10.1038\/35103535","volume":"2","author":"A-C Syv\u00e4nen","year":"2001","unstructured":"Syv\u00e4nen A-C. Accessing genetic variation: genotyping single nucleotide polymorphisms. Nat Rev Genet. 2001;2:930\u201342.","journal-title":"Nat Rev Genet"},{"key":"790_CR2","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1101\/gr.5429606","volume":"17","author":"FC Chen","year":"2007","unstructured":"Chen FC, Chen CJ, Li WH, Chuang TJ. Human-specific insertions and deletions inferred from mammalian genome sequences. Genome Res. 2007;17:16\u201322.","journal-title":"Genome Res"},{"key":"790_CR3","doi-asserted-by":"publisher","first-page":"554","DOI":"10.1016\/j.tplants.2003.09.010","volume":"8","author":"JR Andersen","year":"2003","unstructured":"Andersen JR, Lubberstedt T. Functional markers in plants. Trends Plant Sci. 2003;8:554\u201360.","journal-title":"Trends Plant Sci"},{"key":"790_CR4","doi-asserted-by":"publisher","first-page":"1160","DOI":"10.1038\/ng.942","volume":"43","author":"A Studer","year":"2011","unstructured":"Studer A, Zhao Q, Ross-Ibarra J, Doebley J. Identification of a functional transposon insertion in the maize domestication gene tb1. Nat Genet. 2011;43:1160\u20133.","journal-title":"Nat Genet"},{"key":"790_CR5","doi-asserted-by":"publisher","first-page":"148","DOI":"10.1016\/j.pbi.2008.12.008","volume":"12","author":"D Grattapaglia","year":"2009","unstructured":"Grattapaglia D, Plomion C, Kirst M, Sederoff RR. Genomics of growth traits in forest trees. Curr Opin Plant Biol. 2009;12:148\u201356.","journal-title":"Curr Opin Plant Biol"},{"key":"790_CR6","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1038\/ng1746","volume":"38","author":"M Stephens","year":"2006","unstructured":"Stephens M, Sloan JS, Robertson PD, Scheet P, Nickerson DA. Automating sequence-based detection and genotyping of SNPs from diploid samples. Nat Genet. 2006;38:375\u201381.","journal-title":"Nat Genet"},{"key":"790_CR7","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1038\/70570","volume":"23","author":"GT Marth","year":"1999","unstructured":"Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, et al. A general approach to single-nucleotide polymorphism discovery. Nat Genet. 1999;23:452\u20136.","journal-title":"Nat Genet"},{"key":"790_CR8","doi-asserted-by":"publisher","first-page":"436","DOI":"10.1101\/gr.2754005","volume":"15","author":"S Weckx","year":"2005","unstructured":"Weckx S, Del-Favero J, Rademakers R, Claes L, Cruts M, de Jonghe P, et al. novoSNP, a novel computational tool for sequence variation discovery. Genome Res. 2005;15:436\u201342.","journal-title":"Genome Res"},{"key":"790_CR9","doi-asserted-by":"publisher","first-page":"1457","DOI":"10.1038\/ng1925","volume":"38","author":"TR Bhangale","year":"2006","unstructured":"Bhangale TR, Stephens M, Nickerson DA. Automating resequencing-based detection of insertion-deletion polymorphisms. Nat Genet. 2006;38:1457\u201361.","journal-title":"Nat Genet"},{"key":"790_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.cca.2014.04.006","volume":"436","author":"CW Lam","year":"2014","unstructured":"Lam CW. PrimeIndel: four-prime-number genetic code for indel decryption and sequence read alignment. Clin Chim Acta. 2014;436:1\u20134.","journal-title":"Clin Chim Acta"},{"key":"790_CR11","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1007\/BF01456326","volume":"69","author":"A Haar","year":"1910","unstructured":"Haar A. Zur theorie der orthogonalen funktionensysteme. Math Ann. 1910;69:331\u201371.","journal-title":"Math Ann"},{"key":"790_CR12","first-page":"180","volume":"11","author":"G Hariharan","year":"2011","unstructured":"Hariharan G. Haar wavelet method for solving the Klein-Gordon and the sine-Gordon equations. Inte J Nonlin Sci. 2011;11:180\u20139.","journal-title":"Inte J Nonlin Sci"},{"key":"790_CR13","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/S0045-7906(01)00011-8","volume":"29","author":"RS Stankovi\u0107","year":"2003","unstructured":"Stankovi\u0107 RS, Falkowski BJ. The Haar wavelet transform: its status and achievements. Comput Electr Eng. 2003;29:25\u201344.","journal-title":"Comput Electr Eng"},{"key":"790_CR14","doi-asserted-by":"crossref","first-page":"164","DOI":"10.1090\/qam\/10666","volume":"2","author":"K Levenberg","year":"1944","unstructured":"Levenberg K. A method for the solution of certain non-linear problems in least squares. Q Appl Math. 1944;2:164\u20138.","journal-title":"Q Appl Math"},{"key":"790_CR15","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1137\/0111030","volume":"11","author":"D Marquardt","year":"1963","unstructured":"Marquardt D. An algorithm for least-squares estimation of nonlinear parameters. SIAM J Appl Math. 1963;11:431\u201341.","journal-title":"SIAM J Appl Math"},{"key":"790_CR16","doi-asserted-by":"publisher","first-page":"2554","DOI":"10.1073\/pnas.79.8.2554","volume":"79","author":"JJ Hopfield","year":"1982","unstructured":"Hopfield JJ. Neural networks and physical system with emergent collective computational abilities. Proc Natl Acad Sci U S A. 1982;79:2554\u20138.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"790_CR17","doi-asserted-by":"publisher","first-page":"533","DOI":"10.1038\/323533a0","volume":"323","author":"DE Rumelhart","year":"1986","unstructured":"Rumelhart DE, Hinton GE, Williams RJ. Learning representations by back-propagating errors. Nature. 1986;323:533\u20136.","journal-title":"Nature"},{"key":"790_CR18","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1016\/S0924-0136(01)01157-8","volume":"122","author":"J-H Chen","year":"2002","unstructured":"Chen J-H, Wu L-J, Kuo H-C. Neural-fuzzy fault diagnosis in a marine propulsion shaft system. J Mat Proc Tech. 2002;122:12\u201322.","journal-title":"J Mat Proc Tech"},{"key":"790_CR19","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1016\/j.cam.2013.09.027","volume":"23","author":"S Ding","year":"2014","unstructured":"Ding S, Chang X-H, Wu Q-H. Comparative pattern classification of BP neural networks improved by numerical optimization approaches. Comput Syst Appl. 2014;23:139\u201344.","journal-title":"Comput Syst Appl"},{"key":"790_CR20","doi-asserted-by":"crossref","first-page":"109","DOI":"10.3233\/IFS-1993-1202","volume":"1","author":"H Hellendoorn","year":"1993","unstructured":"Hellendoorn H, Thomas C. Defuzzification in fuzzy controllers. J Intell Fuzzy Syst. 1993;1:109\u201323.","journal-title":"J Intell Fuzzy Syst"},{"key":"790_CR21","doi-asserted-by":"publisher","first-page":"740","DOI":"10.1049\/el:19940468","volume":"30","author":"SH Jung","year":"1994","unstructured":"Jung SH, Cho KH, Kim TG, Park KH. Defuzzification method for multishaped output fuzzy sets. Electron Lett. 1994;30:740\u20132.","journal-title":"Electron Lett"},{"key":"790_CR22","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1515\/sg-2012-0031","volume":"61","author":"X Yu","year":"2012","unstructured":"Yu X, Guo Y, Zhang X, Li F, Weng Q, Li M, et al. Integration of EST-CAPS markers into genetic maps of Eucalyptus urophylla and E. tereticornis and their alignment with E. grandis genome sequence. Silvae Genet. 2012;61:247\u201355.","journal-title":"Silvae Genet"},{"key":"790_CR23","doi-asserted-by":"publisher","first-page":"e134","DOI":"10.3732\/ajb.1100442","volume":"99","author":"X He","year":"2012","unstructured":"He X, Wang Y, Li F, Weng Q, Li M, Xu L, et al. Development of 198 novel EST-derived microsatellites in Eucalyptus (Myrtaceae). Am J Bot. 2012;99:e134\u201348.","journal-title":"Am J Bot"},{"key":"790_CR24","doi-asserted-by":"publisher","first-page":"e105","DOI":"10.1093\/nar\/gkn425","volume":"36","author":"JC Dohm","year":"2008","unstructured":"Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 2008;36:e105.","journal-title":"Nucleic Acids Res"},{"key":"790_CR25","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1038\/nrg2986","volume":"12","author":"R Nielson","year":"2011","unstructured":"Nielson R, Paul JS, Albrechtsen A, Song YS. Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet. 2011;12:443\u201351.","journal-title":"Nat Rev Genet"},{"key":"790_CR26","doi-asserted-by":"publisher","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","volume":"23","author":"MA Larkin","year":"2007","unstructured":"Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics. 2007;23:2947\u20138.","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0790-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12859-015-0790-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-015-0790-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,9,10]],"date-time":"2020-09-10T05:00:29Z","timestamp":1599714029000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0790-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,10,24]]},"references-count":26,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["790"],"URL":"https:\/\/doi.org\/10.1186\/s12859-015-0790-y","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,10,24]]},"article-number":"343"}}