{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T09:00:31Z","timestamp":1767171631310,"version":"build-2238731810"},"reference-count":12,"publisher":"Springer Science and Business Media LLC","issue":"S4","license":[{"start":{"date-parts":[[2016,2,1]],"date-time":"2016-02-01T00:00:00Z","timestamp":1454284800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2016,2]]},"DOI":"10.1186\/s12859-016-0907-y","type":"journal-article","created":{"date-parts":[[2016,3,2]],"date-time":"2016-03-02T06:31:38Z","timestamp":1456900298000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology"],"prefix":"10.1186","volume":"17","author":[{"given":"Paolo","family":"Romano","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Francesca","family":"Cordero","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,3,2]]},"reference":[{"key":"907_CR1","unstructured":"NETTAB Workshops. [ http:\/\/www.nettab.org\/ ]. Last accessed 28 January 2016."},{"issue":"Suppl 4","key":"907_CR2","doi-asserted-by":"publisher","first-page":"S1","DOI":"10.1186\/1471-2105-9-S4-S1","volume":"9","author":"N Cannata","year":"2008","unstructured":"Cannata N, Schr\u00f6der M, Marangoni R, Romano P. A Semantic Web for Bioinformatics: Goals, Tools, Systems, Applications. BMC Bioinformatics. 2008;9 Suppl 4:S1. doi: 10.1186\/1471-2105-9-S4-S1 . PMID: 18460170.","journal-title":"BMC Bioinformatics"},{"issue":"2","key":"907_CR3","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1109\/TNB.2007.897434","volume":"6","author":"G Armano","year":"2007","unstructured":"Armano G, Breton V, Milanesi L, Romano P. Special Section on GRID, Web Services, Software Agents, and Ontology Applications for Life Sciences (Guest Editorial). IEEE Transactions on NanoBioscience (IEEE-TNB). 2007;6(2):101\u20133.","journal-title":"IEEE Transactions on NanoBioscience (IEEE-TNB)"},{"issue":"Suppl 14","key":"907_CR4","doi-asserted-by":"publisher","first-page":"S1","DOI":"10.1186\/1471-2105-15-S14-S1","volume":"15","author":"P Romano","year":"2014","unstructured":"Romano P, Cannata N. NETTAB 2013: Semantic, social, and mobile applications for bioinformatics and biomedical laboratories. BMC Bioinformatics. 2014;15 Suppl 14:S1. doi: 10.1186\/1471-2105-15-S14-S1 . PMID: 25471662, PMCID: PMC4255736.","journal-title":"BMC Bioinformatics"},{"key":"907_CR5","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1016\/B978-0-12-801213-0.00007-1","volume-title":"Algebraic and Discrete Mathematical Methods for Modern Biology","author":"MA Bl\u00e4tke","year":"2015","unstructured":"Bl\u00e4tke MA, Heiner M, Marwan W. BioModel Engineering with Petri Nets. In: Robeva R, editor. Algebraic and Discrete Mathematical Methods for Modern Biology. Burlington: Academic; 2015. p. 141\u201392. doi: 10.1016\/B978-0-12-801213-0.00007-1 ."},{"issue":"Web Server issu","key":"907_CR6","doi-asserted-by":"publisher","first-page":"W252","DOI":"10.1093\/nar\/gku340","volume":"42","author":"M Biasini","year":"2014","unstructured":"Biasini M, Bienert S, Waterhouse A, Arnold K, Studer G, Schmidt T, et al. SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 2014;42(Web Server issue):W252\u2013258. doi: 10.1093\/nar\/gku340 .","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 3","key":"907_CR7","first-page":"S2","volume":"17","author":"A Ceol","year":"2016","unstructured":"Ceol A, Verhoef LGGC, Wade M, Muller H. Genome and network visualization facilitates the analyses of the effects of drugs and mutations on protein-protein and drug-protein networks. BMC Bioinformatics. 2016;17 Suppl 3:S2.","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 3","key":"907_CR8","first-page":"S3","volume":"17","author":"F Chiappori","year":"2016","unstructured":"Chiappori F, Mattiazzi L, Milanesi L, Merelli I. A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the \u03b1B-Crystallin case study. BMC Bioinformatics. 2016;17 Suppl 3:S3.","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 3","key":"907_CR9","first-page":"S4","volume":"17","author":"N Prezza","year":"2016","unstructured":"Prezza N, Vezzi F, K\u00e4ller M, Policriti A. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2. BMC Bioinformatics. 2016;17 Suppl 3:S4.","journal-title":"BMC Bioinformatics"},{"issue":"11","key":"907_CR10","doi-asserted-by":"crossref","first-page":"1571","DOI":"10.1093\/bioinformatics\/btr167","volume":"27","author":"F Krueger","year":"2011","unstructured":"Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 2011;27(11):1571\u20132.","journal-title":"Bioinformatics"},{"issue":"Suppl 3","key":"907_CR11","first-page":"S5","volume":"17","author":"P Romano","year":"2016","unstructured":"Romano P, Profumo A, Rocco M, Mangerini R, Ferri F, Facchiano A. Geena 2, improved automated analysis of MALDI\/TOF mass spectra. BMC Bioinformatics. 2016;17 Suppl 3:S5.","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 3","key":"907_CR12","first-page":"S6","volume":"17","author":"C Angione","year":"2016","unstructured":"Angione C, Conway M, Li\u00f2 P. Weighted integration of multi-omic layers of conditions in genome-scale models. BMC Bioinformatics. 2016;17 Suppl 3:S6.","journal-title":"BMC Bioinformatics"}],"updated-by":[{"DOI":"10.1186\/s12859-016-1050-5","type":"erratum","label":"Erratum","source":"publisher","updated":{"date-parts":[[2016,7,29]],"date-time":"2016-07-29T00:00:00Z","timestamp":1469750400000}}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-016-0907-y","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,24]],"date-time":"2017-06-24T03:22:38Z","timestamp":1498274558000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-016-0907-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,2]]},"references-count":12,"journal-issue":{"issue":"S4","published-print":{"date-parts":[[2016,2]]}},"alternative-id":["907"],"URL":"https:\/\/doi.org\/10.1186\/s12859-016-0907-y","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,2]]},"article-number":"62"}}