{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,14]],"date-time":"2026-06-14T09:21:51Z","timestamp":1781428911161,"version":"3.54.1"},"reference-count":17,"publisher":"Springer Science and Business Media LLC","issue":"S17","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s12859-016-1329-6","type":"journal-article","created":{"date-parts":[[2016,12,23]],"date-time":"2016-12-23T16:27:56Z","timestamp":1482510476000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":16,"title":["A fast read alignment method based on seed-and-vote for next generation sequencing"],"prefix":"10.1186","volume":"17","author":[{"given":"Song","family":"Liu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yi","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fei","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2016,12,23]]},"reference":[{"issue":"5","key":"1329_CR1","doi-asserted-by":"crossref","first-page":"473","DOI":"10.1093\/bib\/bbq015","volume":"11","author":"H Li","year":"2010","unstructured":"Li H, Homer N. A survey of sequence alignment algorithms for next-generation sequencing. Brief Bioinform. 2010;11(5):473\u201383.","journal-title":"Brief Bioinform"},{"issue":"3","key":"1329_CR2","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215(3):403\u201310 (8).","journal-title":"J Mol Biol"},{"issue":"5","key":"1329_CR3","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1093\/bioinformatics\/btn025","volume":"24","author":"R Li","year":"2008","unstructured":"Li R, Li Y, Kristiansen K, Wang J. Sequence analysis soap: short oligonucleotide alignment program. Bioinformatics. 2008;24(5):713\u20134.","journal-title":"Bioinformatics"},{"issue":"11","key":"1329_CR4","doi-asserted-by":"crossref","first-page":"1851","DOI":"10.1101\/gr.078212.108","volume":"18","author":"H Li","year":"2008","unstructured":"Li H, Ruan JR. Mapping short dna sequencing reads and calling variants using mapping quality scores. Genome Res. 2008;18(11):1851\u20138.","journal-title":"Genome Res"},{"issue":"4","key":"1329_CR5","first-page":"425","volume":"57","author":"M Burrows","year":"1994","unstructured":"Burrows M, Wheeler DJ. A block-sorting lossless data compression algorithm. Digital Src Research Report. 1994;57(4):425.","journal-title":"Digital Src Research Report"},{"issue":"14","key":"1329_CR6","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","volume":"25","author":"H Li","year":"2009","unstructured":"Li H, Durbin R. Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics. 2009;25(14):1754\u201360.","journal-title":"Bioinformatics"},{"issue":"3","key":"1329_CR7","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","volume":"10","author":"B Langmead","year":"2009","unstructured":"Langmead B, Pop M. Ultrafast and memory-efficient alignment of short dna sequences to the human genome. Genome Biol. 2009;10(3):R25.","journal-title":"Genome Biol"},{"issue":"15","key":"1329_CR8","doi-asserted-by":"crossref","first-page":"1966","DOI":"10.1093\/bioinformatics\/btp336","volume":"25","author":"R Li","year":"2009","unstructured":"Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics. 2009;25(15):1966\u20137.","journal-title":"Bioinformatics"},{"issue":"5","key":"1329_CR9","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1093\/bioinformatics\/btp698","volume":"26","author":"H Li","year":"2010","unstructured":"Li H, Durbin R. Fast and accurate long-read alignment with Burrows\u2013Wheeler transform. Bioinformatics. 2010;26(5):589\u201395.","journal-title":"Bioinformatics"},{"key":"1329_CR10","volume-title":"Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM","author":"H Li","year":"2013","unstructured":"Li H. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. 2013. arXiv preprint arXiv:1303.3997."},{"issue":"1","key":"1329_CR11","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1109\/MDAT.2013.2284198","volume":"31","author":"Y Liu","year":"2014","unstructured":"Liu Y, Schmidt B. CUSHAW2-GPU: empowering faster gapped short-read alignment using GPU computing. Design & Test, IEEE. 2014;31(1):31\u20139.","journal-title":"Design & Test, IEEE"},{"key":"1329_CR12","volume-title":"Large-Scale DNA Sequence Analysis in the Cloud: A Stream-Based Approach. Euro-Par 2011: Parallel Processing Workshops","author":"R Kienzler","year":"2012","unstructured":"Kienzler R, Bruggmann R, Ranganathan A, Tatbul N. Large-Scale DNA Sequence Analysis in the Cloud: A Stream-Based Approach. Euro-Par 2011: Parallel Processing Workshops. Berlin Heidelberg: Springer; 2012."},{"key":"1329_CR13","unstructured":"Schatz M C. BlastReduce: high performance short read mapping with MapReduce[J]. University of Maryland; 2008. http:\/\/cgis.cs.umd.edu\/Grad\/scholarlypapers\/papers\/MichaelSchatz.pdf ."},{"issue":"10","key":"1329_CR14","doi-asserted-by":"crossref","first-page":"e108","DOI":"10.1093\/nar\/gkt214","volume":"41","author":"Y Liao","year":"2013","unstructured":"Liao Y, Smyth GK, Shi W. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Res. 2013;41(10):e108\u20138.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"1329_CR15","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"B Langmead","year":"2012","unstructured":"Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357\u20139.","journal-title":"Nat Methods"},{"key":"1329_CR16","doi-asserted-by":"crossref","unstructured":"Li H. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics. 2011;27(21):2987\u201393.","DOI":"10.1093\/bioinformatics\/btr509"},{"issue":"16","key":"1329_CR17","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","author":"H Li","year":"2009","unstructured":"Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Durbin R. The sequence alignment\/map format and SAMtools. Bioinformatics. 2009;25(16):2078\u20139.","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-016-1329-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,25]],"date-time":"2017-06-25T06:36:51Z","timestamp":1498372611000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-016-1329-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,12]]},"references-count":17,"journal-issue":{"issue":"S17","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["1329"],"URL":"https:\/\/doi.org\/10.1186\/s12859-016-1329-6","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,12]]},"article-number":"466"}}