{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T07:08:09Z","timestamp":1761808089141},"reference-count":19,"publisher":"Springer Science and Business Media LLC","issue":"1","funder":[{"DOI":"10.13039\/501100012166","name":"National Basic Research Program of China","doi-asserted-by":"crossref","award":["2014CB74460"],"award-info":[{"award-number":["2014CB74460"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"crossref"}]},{"name":"National Natural Science Foundation of China (CN)","award":["614201"],"award-info":[{"award-number":["614201"]}]},{"DOI":"10.13039\/501100004826","name":"Beijing Natural Science Foundation","doi-asserted-by":"crossref","award":["4164080"],"award-info":[{"award-number":["4164080"]}],"id":[{"id":"10.13039\/501100004826","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100012492","name":"Beijing Outstanding Talent Training Foundation","doi-asserted-by":"crossref","award":["2014000020124G039"],"award-info":[{"award-number":["2014000020124G039"]}],"id":[{"id":"10.13039\/100012492","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2017,12]]},"DOI":"10.1186\/s12859-017-1597-9","type":"journal-article","created":{"date-parts":[[2017,3,29]],"date-time":"2017-03-29T13:34:38Z","timestamp":1490794478000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["M-AMST: an automatic 3D neuron tracing method based on mean shift and adapted minimum spanning tree"],"prefix":"10.1186","volume":"18","author":[{"given":"Zhijiang","family":"Wan","sequence":"first","affiliation":[]},{"given":"Yishan","family":"He","sequence":"additional","affiliation":[]},{"given":"Ming","family":"Hao","sequence":"additional","affiliation":[]},{"given":"Jian","family":"Yang","sequence":"additional","affiliation":[]},{"given":"Ning","family":"Zhong","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,3,29]]},"reference":[{"issue":"7","key":"1597_CR1","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1002\/cyto.a.20895","volume":"77 A","author":"E Meijering","year":"2010","unstructured":"Meijering E. Neuron tracing in perspective. Cytometry A. 2010;77 A(7):693\u2013704.","journal-title":"Cytometry A"},{"issue":"5","key":"1597_CR2","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1109\/MIS.2015.83","volume":"30","author":"N Zhong","year":"2015","unstructured":"Zhong N, Yau SS, Ma J, Shimojo S, Just M, Hu B, Wang G, Oiwa K, Anzai Y. Brain Informatics-Based Big Data and the Wisdom Web of Things. IEEE Intell Syst. 2015;30(5):2\u20137.","journal-title":"IEEE Intell Syst"},{"issue":"17","key":"1597_CR3","doi-asserted-by":"crossref","first-page":"1827","DOI":"10.1093\/bioinformatics\/btn346","volume":"24","author":"H Peng","year":"2008","unstructured":"Peng H. Bioimage informatics: a new area of engineering biology. Bioinformatics. 2008;24(17):1827\u201336.","journal-title":"Bioinformatics"},{"issue":"1","key":"1597_CR4","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s12021-008-9010-5","volume":"6","author":"GA Ascoli","year":"2008","unstructured":"Ascoli GA. Neuroinformatics Grand Challenges. Neuroinformatics. 2008;6(1):1\u20133.","journal-title":"Neuroinformatics"},{"issue":"3","key":"1597_CR5","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1007\/s12021-015-9270-9","volume":"13","author":"H Peng","year":"2015","unstructured":"Peng H, Meijering E, Ascoli GA. From DIADEM to BigNeuron. Neuroinformatics. 2015;13(3):259\u201360.","journal-title":"Neuroinformatics"},{"issue":"2","key":"1597_CR6","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1016\/j.neuron.2015.06.036","volume":"87","author":"H Peng","year":"2015","unstructured":"Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli Giorgio A. BigNeuron: large-scale 3d neuron reconstruction from optical microscopy images. Neuron. 2015;87(2):252\u20136.","journal-title":"Neuron"},{"key":"1597_CR7","doi-asserted-by":"crossref","unstructured":"Pal SK. Fuzzy sets in image processing and recognition. In: Fuzzy Systems, 1992, IEEE International Conference on: 8-12 Mar 1992 1992. 119-126.","DOI":"10.1109\/FUZZY.1992.258606"},{"key":"1597_CR8","doi-asserted-by":"crossref","unstructured":"Malladi R, Sethian JA. Level set and fast marching methods in image processing and computer vision. In: Image Processing, 1996 Proceedings, International Conference on: 16-19 Sep 1996 1996. 489-492 vol.481.","DOI":"10.1109\/ICIP.1996.559540"},{"issue":"11","key":"1597_CR9","doi-asserted-by":"crossref","first-page":"1448","DOI":"10.1093\/bioinformatics\/btt170","volume":"29","author":"H Xiao","year":"2013","unstructured":"Xiao H, Peng H. APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree. Bioinformatics. 2013;29(11):1448\u201354.","journal-title":"Bioinformatics"},{"issue":"13","key":"1597_CR10","doi-asserted-by":"crossref","first-page":"i239","DOI":"10.1093\/bioinformatics\/btr237","volume":"27","author":"H Peng","year":"2011","unstructured":"Peng H, Long F, Myers G. Automatic 3D neuron tracing using all-path pruning. Bioinformatics. 2011;27(13):i239\u201347.","journal-title":"Bioinformatics"},{"issue":"2","key":"1597_CR11","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1007\/s12021-011-9110-5","volume":"9","author":"Y Wang","year":"2011","unstructured":"Wang Y, Narayanaswamy A, Tsai C-L, Roysam B. A broadly applicable 3-D neuron tracing method based on open-curve snake. Neuroinformatics. 2011;9(2):193\u2013217.","journal-title":"Neuroinformatics"},{"issue":"4","key":"1597_CR12","doi-asserted-by":"crossref","first-page":"1608","DOI":"10.1016\/j.neuroimage.2006.05.036","volume":"32","author":"H Cai","year":"2006","unstructured":"Cai H, Xu X, Lu J, Lichtman JW, Yung SP, Wong ST. Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks. Neuroimage. 2006;32(4):1608\u201320.","journal-title":"Neuroimage"},{"issue":"12","key":"1597_CR13","doi-asserted-by":"crossref","first-page":"i38","DOI":"10.1093\/bioinformatics\/btq212","volume":"26","author":"H Peng","year":"2010","unstructured":"Peng H, Ruan Z, Atasoy D, Sternson S. Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinformatics. 2010;26(12):i38\u201346.","journal-title":"Bioinformatics"},{"issue":"6","key":"1597_CR14","doi-asserted-by":"crossref","first-page":"666","DOI":"10.1016\/j.media.2008.03.002","volume":"12","author":"H Cai","year":"2008","unstructured":"Cai H, Xu X, Lu J, Lichtman J, Yung SP, Wong ST. Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images. Med Image Anal. 2008;12(6):666\u201375.","journal-title":"Med Image Anal"},{"key":"1597_CR15","doi-asserted-by":"crossref","unstructured":"Oliver A, Munoz X, Batlle J, Pacheco L, Freixenet J. Improving Clustering Algorithms for Image Segmentation using Contour and Region Information. In: 2006 IEEE International Conference on Automation, Quality and Testing, Robotics: 25-28 May 2006 2006. 315-320.","DOI":"10.1109\/AQTR.2006.254652"},{"key":"1597_CR16","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1016\/j.neuroimage.2013.10.036","volume":"87","author":"J Wu","year":"2014","unstructured":"Wu J, He Y, Yang Z, Guo C, Luo Q, Zhou W, Chen S, Li A, Xiong B, Jiang T, et al. 3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution. NeuroImage. 2014;87:199\u2013208.","journal-title":"NeuroImage"},{"issue":"1","key":"1597_CR17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-14-1","volume":"14","author":"J Yang","year":"2013","unstructured":"Yang J, Gonzalez-Bellido PT, Peng H. A distance-field based automatic neuron tracing method. BMC Bioinformatics. 2013;14(1):1\u201311.","journal-title":"BMC Bioinformatics"},{"issue":"5","key":"1597_CR18","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1109\/34.1000236","volume":"24","author":"D Comaniciu","year":"2002","unstructured":"Comaniciu D, Meer P. Mean shift: a robust approach toward feature space analysis. IEEE Trans Pattern Anal Mach Intell. 2002;24(5):603\u201319.","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"issue":"4","key":"1597_CR19","doi-asserted-by":"crossref","first-page":"348","DOI":"10.1038\/nbt.1612","volume":"28","author":"H Peng","year":"2010","unstructured":"Peng H, Ruan Z, Long F, Simpson JH, Myers EW. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nat Biotech. 2010;28(4):348\u201353.","journal-title":"Nat Biotech"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-017-1597-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,17]],"date-time":"2020-05-17T19:10:15Z","timestamp":1589742615000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-017-1597-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,3,29]]},"references-count":19,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2017,12]]}},"alternative-id":["1597"],"URL":"https:\/\/doi.org\/10.1186\/s12859-017-1597-9","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,3,29]]},"article-number":"197"}}