{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T20:20:18Z","timestamp":1773260418609,"version":"3.50.1"},"reference-count":32,"publisher":"Springer Science and Business Media LLC","issue":"1","funder":[{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"crossref","award":["ME3737\/3-1"],"award-info":[{"award-number":["ME3737\/3-1"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2017,12]]},"DOI":"10.1186\/s12859-017-1681-1","type":"journal-article","created":{"date-parts":[[2017,5,25]],"date-time":"2017-05-25T09:05:50Z","timestamp":1495703150000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["An unsupervised learning approach for tracking mice in an enclosed area"],"prefix":"10.1186","volume":"18","author":[{"given":"Jakob","family":"Unger","sequence":"first","affiliation":[]},{"given":"Mike","family":"Mansour","sequence":"additional","affiliation":[]},{"given":"Marcin","family":"Kopaczka","sequence":"additional","affiliation":[]},{"given":"Nina","family":"Gronloh","sequence":"additional","affiliation":[]},{"given":"Marc","family":"Spehr","sequence":"additional","affiliation":[]},{"given":"Dorit","family":"Merhof","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,5,25]]},"reference":[{"issue":"5847","key":"1681_CR1","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1126\/science.1146221","volume":"318","author":"K Tabuchi","year":"2007","unstructured":"Tabuchi K, Blundell J, Etherton MR, Hammer RE, Liu X, Powell CM, S\u00fcdhof TC. A neuroligin-3 mutation implicated in autism increases inhibitory synaptic transmission in mice. Science. 2007; 318(5847):71\u20137.","journal-title":"Science"},{"issue":"8","key":"1681_CR2","doi-asserted-by":"crossref","first-page":"3248","DOI":"10.1523\/JNEUROSCI.19-08-03248.1999","volume":"19","author":"RJ Carter","year":"1999","unstructured":"Carter RJ, Lione LA, Humby T, Mangiarini L, Mahal A, Bates GP, Dunnett SB, Morton AJ. Characterization of progressive motor deficits in mice transgenic for the human huntington\u2019s disease mutation. J Neurosci. 1999; 19(8):3248\u2013257.","journal-title":"J Neurosci"},{"key":"1681_CR3","doi-asserted-by":"crossref","first-page":"809","DOI":"10.1016\/j.neuron.2008.03.001","volume":"57","author":"JN Crawley","year":"2008","unstructured":"Crawley JN. Behavioral phenotyping strategies for mutant mice. Neuron. 2008; 57:809\u201318.","journal-title":"Neuron"},{"key":"1681_CR4","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1016\/j.jneumeth.2013.05.013","volume":"219","author":"S Ohayon","year":"2013","unstructured":"Ohayon S, Avni O, Taylor AL, Perona P, Egnor SER. Automated multi-day tracking of marked mice for the analysis of social behavior. J Neurosci Methods. 2013; 219:10\u201319.","journal-title":"J Neurosci Methods"},{"key":"1681_CR5","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1016\/j.jneumeth.2014.05.022","volume":"234","author":"S Ballesta","year":"2014","unstructured":"Ballesta S, Reymond G, Pozzobon M, Duhamel JR. A real-time 3d video tracking system for monitoring primate groups. J Neurosci Methods. 2014; 234:147\u201352.","journal-title":"J Neurosci Methods"},{"key":"1681_CR6","volume-title":"Pervasive 2006 Workshop Proceedings","author":"M Kritzler","year":"2006","unstructured":"Kritzler M, Lewejohann L, Kr\u00fcger A, Raubal M, Sachser N. An RFID-based Tracking System for Laboratory Mice in a Semi Natural Environment. In: Strang T, Cahill V, Quigley A, editors. Pervasive 2006 Workshop Proceedings. Dublin: IEEE: 2006. p. 1\u20136."},{"issue":"4","key":"1681_CR7","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1109\/JSEN.2013.2293594","volume":"14","author":"L Catarinucci","year":"2014","unstructured":"Catarinucci L, Colella R, Mainetti L, Patrono L, Pieretti S, Sergi I, Tarricone L. Smart rfid antenna system for indoor tracking and behavior analysis of small animals in colony cages. IEEE Sensors J. 2014; 14(4):1198\u2013206.","journal-title":"IEEE Sensors J"},{"issue":"38","key":"1681_CR8","doi-asserted-by":"crossref","first-page":"5351","DOI":"10.1073\/pnas.1515982112","volume":"112","author":"W Hong","year":"2015","unstructured":"Hong W, Kennedy A, Burgos-Artizzu XP, Zelikowsky M, Navonne SG, Perona P, Anderson DJ. Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning. PNAS. 2015; 112(38):5351\u201360.","journal-title":"PNAS"},{"issue":"9","key":"1681_CR9","doi-asserted-by":"crossref","first-page":"74557","DOI":"10.1371\/journal.pone.0074557","volume":"8","author":"L Giancardo","year":"2013","unstructured":"Giancardo L, Sona D, Huang H, Sannino S, Manag\u00f2 F, Scheggia D, Papaleo F, Murino V. Automatic visual tracking and social behaviour analysis with multiple mice. PLoS ONE. 2013; 8(9):74557.","journal-title":"PLoS ONE"},{"issue":"4","key":"1681_CR10","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1016\/j.patrec.2009.05.015","volume":"31","author":"H Pistori","year":"2010","unstructured":"Pistori H, Odakura VVVA, Monteiro JBO, Gon\u00e7alves WN, Roel AR, de Andrade Silva J, Machado BB. Mice and larvae tracking using a particle filter with an auto-adjustable observation model. Pattern Recogn Lett. 2010; 31(4):337\u201346.","journal-title":"Pattern Recogn Lett"},{"key":"1681_CR11","volume-title":"SIBGRAPI\u201907, Brazilian Symposium on Computer Graphics and Image Processing","author":"WN Goncalves","year":"2007","unstructured":"Goncalves WN, Monteiro JBO, de Andrade Silva J, Machado BB, Pistori H, Odakura V. Multiple mice tracking using a combination of particle filter and k-means. In: SIBGRAPI\u201907, Brazilian Symposium on Computer Graphics and Image Processing. Los Alamitos: IEEE: 2007. p. 173\u20138."},{"issue":"4","key":"1681_CR12","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1038\/nmeth.1310","volume":"6","author":"H Dankert","year":"2009","unstructured":"Dankert H, Wang L, Hoopfer ED, Anderson DJ, Perona P. Automated monitoring and analysis of social behavior in drosophila. Nat Methods. 2009; 6(4):297\u2013303.","journal-title":"Nat Methods"},{"issue":"3","key":"1681_CR13","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1109\/TPAMI.2007.70707","volume":"30","author":"A Veeraraghavan","year":"2008","unstructured":"Veeraraghavan A, Chellappa R, Srinivasan M. Shape-and-behavior encoded tracking of bee dances. IEEE Trans Pattern Anal Mach Intell. 2008; 30(3):463\u201376.","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"issue":"4","key":"1681_CR14","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1038\/nmeth.1924","volume":"9","author":"F de Chaumont","year":"2012","unstructured":"de Chaumont F, Coura RDS, Serreau P, Cressant A, Chabout J, Granon S, Olivo-Marin JC. Computerized video analysis of social interactions in mice. Nat Methods. 2012; 9(4):410\u20137.","journal-title":"Nat Methods"},{"issue":"2","key":"1681_CR15","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/0091-3057(80)90067-2","volume":"13","author":"J Crawley","year":"1980","unstructured":"Crawley J, Goodwin FK. Preliminary report of a simple animal behavior model for the anxiolytic effects of benzodiazepines. Pharmacol Biochem Behav. 1980; 13(2):167\u201370.","journal-title":"Pharmacol Biochem Behav"},{"issue":"1-3","key":"1681_CR16","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1016\/S0014-2999(03)01274-3","volume":"463","author":"M Bourin","year":"2002","unstructured":"Bourin M, Hasco M. The mouse light\/dark box test. Eur J Pharmacol. 2002; 463(1-3):55\u201365.","journal-title":"Eur J Pharmacol"},{"issue":"7","key":"1681_CR17","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1038\/nrn2851","volume":"11","author":"JL Silverman","year":"2010","unstructured":"Silverman JL, Yang M, Lord C, Crawley JN. Behavioural phenotyping assays for mouse models of autism. Nat Rev Neurosci. 2010; 11(7):152\u201363.","journal-title":"Nat Rev Neurosci"},{"issue":"2","key":"1681_CR18","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1111\/j.1601-183X.2007.00330.x","volume":"7","author":"HG McFarlane","year":"2007","unstructured":"McFarlane HG, Kusek GK, Yang M, Phoenix JL, Bolivar VJ, Crawley JN. Autism-like behavioral phenotypes in btbr t+tf\/j mice. Genes Brain Behav. 2007; 7(2):152\u201363.","journal-title":"Genes Brain Behav"},{"key":"1681_CR19","volume-title":"IEEE International Symposium on Biomedical Imaging (ISBI)","author":"F de Chaumont","year":"2009","unstructured":"de Chaumont F, Dufour A, Serreau P, Chabout J, M\u00fcnter S, Frischknecht F, Granon S, Olivo-Marin JC. Using Physics Engines to Track Objects in Images. In: IEEE International Symposium on Biomedical Imaging (ISBI). Boston: IEEE: 2009. p. 1342\u20135."},{"key":"1681_CR20","volume-title":"IEEE International Conference on Image Processing (ICIP)","author":"F de Chaumont","year":"2009","unstructured":"de Chaumont F, Dufour A, Olivo-Marin JC. Tracking Articulated Objects with Physics Engines. In: IEEE International Conference on Image Processing (ICIP). Cairo: IEEE: 2009. p. 885\u20138."},{"issue":"7","key":"1681_CR21","doi-asserted-by":"crossref","first-page":"743","DOI":"10.1038\/nmeth.2994","volume":"11","author":"A P\u00e9rez-Escudero","year":"2014","unstructured":"P\u00e9rez-Escudero A, Vicente-Page J, Hinz RC, Arganda S, de Polavieja GG. idtracker: tracking individuals in a group by automatic identification of unmarked animals. Nat Methods. 2014; 11(7):743\u20138.","journal-title":"Nat Methods"},{"issue":"3","key":"1681_CR22","doi-asserted-by":"crossref","first-page":"398","DOI":"10.3758\/BF03195394","volume":"33","author":"LPJJ Noldus","year":"2001","unstructured":"Noldus LPJJ, Spink AJ, Tegelenbosch RAJ. Ethovision: a versatile video tracking system for automation of behavioral experiments. Behav Res Methods Instrum Comput. 2001; 33(3):398\u2013414.","journal-title":"Behav Res Methods Instrum Comput"},{"issue":"1","key":"1681_CR23","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1109\/TSMC.1979.4310076","volume":"9","author":"N Otsu","year":"1979","unstructured":"Otsu N. A threshold selection method from gray-level histograms. IEEE Trans Syst Man Cybern. 1979; 9(1):62\u20136.","journal-title":"IEEE Trans Syst Man Cybern"},{"issue":"2","key":"1681_CR24","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1109\/TPAMI.2007.41","volume":"29","author":"H Ling","year":"2007","unstructured":"Ling H, Jacobs DW. Shape classification using the inner-distance. IEEE Trans Pattern Anal Mach Intell. 2007; 29(2):286\u201399.","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"issue":"9","key":"1681_CR25","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1109\/34.993558","volume":"24","author":"S Belongie","year":"2002","unstructured":"Belongie S, Malik J, Puzicha J. Shape matching and object recognition using shape contexts. IEEE Trans Pattern Anal Mach Intell. 2002; 24(9):509\u201322.","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"key":"1681_CR26","unstructured":"Braun S. Tracking multiple mice. Master Thesis, Massachusetts Institute of Technology. 2012. http:\/\/hdl.handle.net\/1721.1\/77001 . Accessed 18 May 2017."},{"issue":"1","key":"1681_CR27","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1006\/cviu.1995.1004","volume":"61","author":"TF Cootes","year":"1995","unstructured":"Cootes TF, Taylor CJ, Cooper DH, Graham J. Active shape models-their training and application. Comput Vis Image Und. 1995; 61(1):38\u201359.","journal-title":"Comput Vis Image Und"},{"issue":"4","key":"1681_CR28","doi-asserted-by":"crossref","first-page":"321","DOI":"10.1007\/BF00133570","volume":"1","author":"M Kass","year":"1998","unstructured":"Kass M, Witkin A, Terzopoulos D. Snakes: Active contour models. Comput Vis Image Und. 1998; 1(4):321\u201331.","journal-title":"Comput Vis Image Und"},{"key":"1681_CR29","volume-title":"Proc. SPIE, Medical Imaging","author":"TF Cootes","year":"2001","unstructured":"Cootes TF, Taylor CJ. Statistical models of appearance for medical image analysis and computer vision. In: Proc. SPIE, Medical Imaging. San Diego: SPIE: 2001. p. 236\u201348."},{"issue":"7","key":"1681_CR30","doi-asserted-by":"crossref","first-page":"1619","DOI":"10.1109\/TPAMI.2010.226","volume":"33","author":"B Babenko","year":"2011","unstructured":"Babenko B, Yang MH, Belongie S. Robust object tracking with online multiple instance learning. PAMI. 2011; 33(7):1619\u201332.","journal-title":"PAMI"},{"issue":"6","key":"1681_CR31","doi-asserted-by":"crossref","first-page":"1983","DOI":"10.1073\/pnas.0610779104","volume":"104","author":"AD Steele","year":"2007","unstructured":"Steele AD, Jackson WS, King OD, Lindqui S. The power of automated high-resolution behavior analysis revealed by its application to mouse models of huntington\u2019s and prion diseases. PNAS. 2007; 104(6):1983\u20138.","journal-title":"PNAS"},{"key":"1681_CR32","volume-title":"Computer Vision and Pattern Recognition (CVPR)","author":"XP Burgos-Artizzu","year":"2012","unstructured":"Burgos-Artizzu XP, Doll\u00e1r P, Lin D, Anderson DJ, Perona P. Social behavior recognition in continuous video. In: Computer Vision and Pattern Recognition (CVPR). Providence: IEEE: 2012. p. 1322\u20139."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-017-1681-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,9,24]],"date-time":"2019-09-24T21:56:24Z","timestamp":1569362184000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-017-1681-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,5,25]]},"references-count":32,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2017,12]]}},"alternative-id":["1681"],"URL":"https:\/\/doi.org\/10.1186\/s12859-017-1681-1","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,5,25]]},"article-number":"272"}}