{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,2,28]],"date-time":"2024-02-28T13:42:00Z","timestamp":1709127720059},"reference-count":12,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2023,8,16]],"date-time":"2023-08-16T00:00:00Z","timestamp":1692144000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2023,8,16]],"date-time":"2023-08-16T00:00:00Z","timestamp":1692144000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"abstract":"<jats:title>Abstract<\/jats:title><jats:sec>\n                <jats:title>Background<\/jats:title>\n                <jats:p>Accurate case report data are essential to understand arbovirus dynamics, including spread and evolution of arboviruses such as Zika, dengue and chikungunya viruses. Giving the multi-country nature of arbovirus epidemics in the Americas, these data are not often accessible or are reported at different time scales (weekly, monthly) from different sources.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Results<\/jats:title>\n                <jats:p>We developed a publicly available and user-friendly database for arboviral case data in the Americas: ARCA. ARCA is a relational database that is hosted on the ARCA website. Users can interact with the database through the website by submitting queries through the website, which generates displays results and allows users to download these results in different, convenient file formats. Users can choose to view arboviral case data through a table which containscontaining the number of cases for a particular week, a plot, or through a map.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Conclusion<\/jats:title>\n                <jats:p>Our ARCA database is a useful tool for arboviral epidemiology research allowing for complex queries, data visualization, integration, and formatting.<\/jats:p>\n              <\/jats:sec>","DOI":"10.1186\/s12859-023-05433-7","type":"journal-article","created":{"date-parts":[[2023,8,16]],"date-time":"2023-08-16T10:02:33Z","timestamp":1692180153000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["ARCA: the interactive database for arbovirus reported cases in the Americas"],"prefix":"10.1186","volume":"24","author":[{"given":"Maria V.","family":"Meneses","sequence":"first","affiliation":[]},{"given":"Alberto","family":"Riva","sequence":"additional","affiliation":[]},{"given":"Marco","family":"Salemi","sequence":"additional","affiliation":[]},{"given":"Carla","family":"Mavian","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2023,8,16]]},"reference":[{"key":"5433_CR1","first-page":"129","volume-title":"Manson's tropical diseases","author":"PR Young","year":"2013","unstructured":"Young PR, et al. Arbovirus infections. In: Manson\u2019s tropical diseases. Elsevier; 2013. p. 129\u201361."},{"issue":"7","key":"5433_CR2","doi-asserted-by":"publisher","first-page":"185","DOI":"10.3390\/v9070185","volume":"9","author":"G Kuno","year":"2017","unstructured":"Kuno G, et al. Vertebrate reservoirs of arboviruses: Myth, synonym of amplifier, or reality? Viruses. 2017;9(7):185.","journal-title":"Viruses"},{"issue":"1","key":"5433_CR3","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1186\/s13071-019-3732-0","volume":"12","author":"MJ Valentine","year":"2019","unstructured":"Valentine MJ, Murdock CC, Kelly PJ. Sylvatic cycles of arboviruses in non-human primates. Parasit Vectors. 2019;12(1):463.","journal-title":"Parasit Vectors"},{"issue":"3","key":"5433_CR4","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0009208","volume":"15","author":"RJ Oidtman","year":"2021","unstructured":"Oidtman RJ, Espa\u00f1a G, Perkins TA. Co-circulation and misdiagnosis led to underestimation of the 2015\u20132017 Zika epidemic in the Americas. PLoS Negl Trop Dis. 2021;15(3): e0009208.","journal-title":"PLoS Negl Trop Dis"},{"key":"5433_CR5","unstructured":"World Health Organization, Vector-borne diseases. 2020: https:\/\/www.who.int\/news-room\/fact-sheets\/detail\/vector-borne-diseases."},{"issue":"9","key":"5433_CR6","doi-asserted-by":"publisher","first-page":"e416","DOI":"10.1016\/S2542-5196(20)30178-9","volume":"4","author":"EA Mordecai","year":"2020","unstructured":"Mordecai EA, et al. Climate change could shift disease burden from malaria to arboviruses in Africa. Lancet Planet Health. 2020;4(9):e416\u201323.","journal-title":"Lancet Planet Health"},{"key":"5433_CR7","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1186\/1752-1947-5-194","volume":"5","author":"V Wiwanitkit","year":"2011","unstructured":"Wiwanitkit V. The usefulness of case reports in managing emerging infectious disease. J Med Case Rep. 2011;5:194.","journal-title":"J Med Case Rep"},{"key":"5433_CR8","volume":"2012","author":"BC Choi","year":"2012","unstructured":"Choi BC. The past, present, and future of public health surveillance. Scientifica (Cairo). 2012;2012: 875253.","journal-title":"Scientifica (Cairo)"},{"issue":"4","key":"5433_CR9","doi-asserted-by":"publisher","first-page":"305","DOI":"10.1089\/bsp.2010.0054","volume":"8","author":"TK Sell","year":"2010","unstructured":"Sell TK. Understanding infectious disease surveillance: its uses, sources, and limitations. Biosecur Bioterror. 2010;8(4):305\u20139.","journal-title":"Biosecur Bioterror"},{"key":"5433_CR10","unstructured":"Pan American Health Organization, Cases of Chikungunya Virus Disease. 2023: https:\/\/www3.paho.org\/data\/index.php\/en\/mnu-topics\/chikv-en\/550-chikv-weekly-en.html."},{"key":"5433_CR11","unstructured":"Pan American Health Organization, Cases of Zika Virus Disease. 2023: https:\/\/www3.paho.org\/data\/index.php\/en\/mnu-topics\/zika-weekly-en\/."},{"key":"5433_CR12","unstructured":"Pan American Health Organization, Reported Cases of Dengue Fever in The Americas. 2023: https:\/\/www3.paho.org\/data\/index.php\/en\/mnu-topics\/indicadores-dengue-en\/dengue-nacional-en\/252-dengue-pais-ano-en.html."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-023-05433-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12859-023-05433-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12859-023-05433-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,17]],"date-time":"2023-11-17T14:03:08Z","timestamp":1700229788000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-023-05433-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,8,16]]},"references-count":12,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2023,12]]}},"alternative-id":["5433"],"URL":"https:\/\/doi.org\/10.1186\/s12859-023-05433-7","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,8,16]]},"assertion":[{"value":"8 January 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"31 July 2023","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 August 2023","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"Not applicable.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"312"}}