{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,19]],"date-time":"2026-03-19T22:15:52Z","timestamp":1773958552727,"version":"3.50.1"},"reference-count":46,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2021,7,8]],"date-time":"2021-07-08T00:00:00Z","timestamp":1625702400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2021,7,8]],"date-time":"2021-07-08T00:00:00Z","timestamp":1625702400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100001661","name":"Ruprecht-Karls-Universit\u00e4t Heidelberg","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100001661","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Med Imaging"],"published-print":{"date-parts":[[2021,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Background<\/jats:title>\n                    <jats:p>\n                      To develop a regression neural network for the reconstruction of lesion probability maps on Magnetic Resonance Fingerprinting using echo-planar imaging (MRF-EPI) in addition to\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$T_1$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:msub>\n                              <mml:mi>T<\/mml:mi>\n                              <mml:mn>1<\/mml:mn>\n                            <\/mml:msub>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      ,\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$${T_2}^*$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:msup>\n                              <mml:mrow>\n                                <mml:msub>\n                                  <mml:mi>T<\/mml:mi>\n                                  <mml:mn>2<\/mml:mn>\n                                <\/mml:msub>\n                              <\/mml:mrow>\n                              <mml:mo>\u2217<\/mml:mo>\n                            <\/mml:msup>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      , NAWM, and GM- probability maps.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Methods<\/jats:title>\n                    <jats:p>\n                      We performed MRF-EPI measurements in 42 patients with multiple sclerosis and 6 healthy volunteers along two sites. A U-net was trained to reconstruct the denoised and distortion corrected\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$T_1$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:msub>\n                              <mml:mi>T<\/mml:mi>\n                              <mml:mn>1<\/mml:mn>\n                            <\/mml:msub>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      and\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$${T_2}^*$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:msup>\n                              <mml:mrow>\n                                <mml:msub>\n                                  <mml:mi>T<\/mml:mi>\n                                  <mml:mn>2<\/mml:mn>\n                                <\/mml:msub>\n                              <\/mml:mrow>\n                              <mml:mo>\u2217<\/mml:mo>\n                            <\/mml:msup>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      maps, and to additionally generate NAWM-, GM-, and WM lesion probability maps.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      WM lesions were predicted with a dice coefficient of\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$0.61\\pm 0.09$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:mrow>\n                              <mml:mn>0.61<\/mml:mn>\n                              <mml:mo>\u00b1<\/mml:mo>\n                              <mml:mn>0.09<\/mml:mn>\n                            <\/mml:mrow>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      and a lesion detection rate of\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$0.85\\pm 0.25$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:mrow>\n                              <mml:mn>0.85<\/mml:mn>\n                              <mml:mo>\u00b1<\/mml:mo>\n                              <mml:mn>0.25<\/mml:mn>\n                            <\/mml:mrow>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      for a threshold of 33%. The network jointly enabled accurate\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$T_1$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:msub>\n                              <mml:mi>T<\/mml:mi>\n                              <mml:mn>1<\/mml:mn>\n                            <\/mml:msub>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      and\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$${T_2}^*$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:msup>\n                              <mml:mrow>\n                                <mml:msub>\n                                  <mml:mi>T<\/mml:mi>\n                                  <mml:mn>2<\/mml:mn>\n                                <\/mml:msub>\n                              <\/mml:mrow>\n                              <mml:mo>\u2217<\/mml:mo>\n                            <\/mml:msup>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      times with relative deviations of 5.2% and 5.1% and average dice coefficients of\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$0.92\\pm 0.04$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:mrow>\n                              <mml:mn>0.92<\/mml:mn>\n                              <mml:mo>\u00b1<\/mml:mo>\n                              <mml:mn>0.04<\/mml:mn>\n                            <\/mml:mrow>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      and\n                      <jats:inline-formula>\n                        <jats:alternatives>\n                          <jats:tex-math>$$0.91\\pm 0.03$$<\/jats:tex-math>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\">\n                            <mml:mrow>\n                              <mml:mn>0.91<\/mml:mn>\n                              <mml:mo>\u00b1<\/mml:mo>\n                              <mml:mn>0.03<\/mml:mn>\n                            <\/mml:mrow>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      for NAWM and GM after binarizing with a threshold of 80%.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusion<\/jats:title>\n                    <jats:p>DL is a promising tool for the prediction of lesion probability maps in a fraction of time. These might be of clinical interest for the WM lesion analysis in MS patients.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1186\/s12880-021-00636-x","type":"journal-article","created":{"date-parts":[[2021,7,8]],"date-time":"2021-07-08T06:03:12Z","timestamp":1625724192000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Lesion probability mapping in MS patients using a regression network on MR fingerprinting"],"prefix":"10.1186","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6379-5299","authenticated-orcid":false,"given":"Ingo","family":"Hermann","sequence":"first","affiliation":[]},{"given":"Alena K.","family":"Golla","sequence":"additional","affiliation":[]},{"given":"Eloy","family":"Mart\u00ednez-Heras","sequence":"additional","affiliation":[]},{"given":"Ralf","family":"Schmidt","sequence":"additional","affiliation":[]},{"given":"Elisabeth","family":"Solana","sequence":"additional","affiliation":[]},{"given":"Sara","family":"Llufriu","sequence":"additional","affiliation":[]},{"given":"Achim","family":"Gass","sequence":"additional","affiliation":[]},{"given":"Lothar R.","family":"Schad","sequence":"additional","affiliation":[]},{"given":"Frank G.","family":"Z\u00f6llner","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2021,7,8]]},"reference":[{"issue":"6","key":"636_CR1","doi-asserted-by":"publisher","first-page":"681","DOI":"10.1177\/1352458510391342","volume":"17","author":"Z Kincses","year":"2011","unstructured":"Kincses Z, Ropele S, Jenkinson M, Khalil M, Petrovic K, Loitfelder M, Langkammer C, Aspeck E, Wallner-Blazek M, Fuchs S, Jehna M, Schmidt R, V\u00e9csei L, Fazekas F, Enzinger C. Lesion probability mapping to explain clinical deficits and cognitive performance in multiple sclerosis. Mult Scler. 2011;17(6):681\u20139. https:\/\/doi.org\/10.1177\/1352458510391342.","journal-title":"Mult. Scler."},{"issue":"2","key":"636_CR2","doi-asserted-by":"publisher","first-page":"1095","DOI":"10.1214\/14-AOAS718","volume":"8","author":"T Ge","year":"2014","unstructured":"Ge T, M\u00fcller-Lenke N, Bendfeldt K, Nichols T, Johnson T. Analysis of multiple sclerosis lesions via spatially varying coefficients. Ann Appl Stat. 2014;8(2):1095\u2013118.","journal-title":"Ann Appl Stat"},{"key":"636_CR3","doi-asserted-by":"publisher","first-page":"1064","DOI":"10.1007\/s00415-006-0164-5","volume":"253","author":"C Enzinger","year":"2006","unstructured":"Enzinger C, Smith S, Fazekas F, Drevin G, Ropele S, Nichols T, Behrens T, Schmidt R, Matthews P. Lesion probability maps of white matter hyperintensities in elderly individuals\u2014results of the Austrian stroke prevention study. J Neurol. 2006;253:1064\u201370. https:\/\/doi.org\/10.1007\/s00415-006-0164-5.","journal-title":"J. Neurol"},{"issue":"1","key":"636_CR4","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1161\/01.STR.0000150668.58689.f2","volume":"36","author":"C DeCarli","year":"2005","unstructured":"DeCarli C, Fletcher E, Ramey V, Harvey D, Jagust J. Anatomical mapping of white matter hyperintensities (wmh): exploring the relationships between periventricular wmh, deep wmh, and total wmh burden. Stroke. 2005;36(1):50\u20135. https:\/\/doi.org\/10.1161\/01.STR.0000150668.58689.f2.","journal-title":"Stroke"},{"issue":"11","key":"636_CR5","doi-asserted-by":"publisher","first-page":"1577","DOI":"10.1177\/1352458512442756","volume":"18","author":"L Filli","year":"2012","unstructured":"Filli L, Hofstetter L, Kuster P, Traud S, Mueller-Lenke N, Naegelin Y, Kappos L, Gass A, Sprenger T, Nichols TE, Vrenken H, Barkhof F, Polman C, Radue E-W, Borgwardt SJ, Bendfeldt K. Spatiotemporal distribution of white matter lesions in relapsing-remitting and secondary progressive multiple sclerosis. Mult Scler. 2012;18(11):1577\u201384. https:\/\/doi.org\/10.1177\/1352458512442756.","journal-title":"Mult. Scler."},{"issue":"2","key":"636_CR6","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1111\/j.1552-6569.2011.00585.x","volume":"22","author":"CM Holland","year":"2012","unstructured":"Holland CM, Charil A, Csapo I, Liptak Z, Ichise M, Khoury SJ, Bakshi R, Weiner HL, Guttmann CRG. The relationship between normal cerebral perfusion patterns and white matter lesion distribution in 1,249 patients with multiple sclerosis. J Neuroimaging. 2012;22(2):129\u201336.","journal-title":"J Neuroimaging"},{"issue":"6","key":"636_CR7","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1002\/acn3.68","volume":"1","author":"G Bonnier","year":"2014","unstructured":"Bonnier G, Roche A, Romascano D, Simioni S, Meskaldji D, Rotzinger D, Lin Y-C, Menegaz G, Schluep M, Du Pasquier R, Sumpf TJ, Frahm J, Thiran J-P, Krueger G, Granziera C. Advanced mri unravels the nature of tissue alterations in early multiple sclerosis. Ann Clin Transl Neurol. 2014;1(6):423\u201332.","journal-title":"Ann Clin Transl Neurol"},{"issue":"1","key":"636_CR8","doi-asserted-by":"publisher","first-page":"94","DOI":"10.3174\/ajnr.A4501","volume":"37","author":"I Blystad","year":"2016","unstructured":"Blystad I, H\u00e5kansson I, Tisell A, Ernerudh J, Smedby \u00d6, Lundberg P, Larsson E-M. Quantitative mri for analysis of active multiple sclerosis lesions without gadolinium-based contrast agent. Am J Neuroradiol. 2016;37(1):94\u2013100. https:\/\/doi.org\/10.3174\/ajnr.A4501.","journal-title":"Am J Neuroradiol"},{"issue":"1","key":"636_CR9","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1002\/jmri.26561","volume":"50","author":"E Hern\u00e1ndez-Torres","year":"2019","unstructured":"Hern\u00e1ndez-Torres E, Wiggermann V, Machan L, Sadovnick AD, Li DKB, Traboulsee A, Hametner S, Rauscher A. Increased mean r2* in the deep gray matter of multiple sclerosis patients: have we been measuring atrophy? J Magn Reson Imaging. 2019;50(1):201\u20138. https:\/\/doi.org\/10.1002\/jmri.26561.","journal-title":"J Magn Reson Imaging"},{"key":"636_CR10","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1038\/nature11971","volume":"495","author":"D Ma","year":"2013","unstructured":"Ma D, Gulani V, Seiberlich N, Liu K, Sunshine JL, Duerk JL, Griswold MA. Magnetic resonance fingerprinting. Nature. 2013;495:187\u201392.","journal-title":"Nature"},{"key":"636_CR11","doi-asserted-by":"publisher","DOI":"10.1016\/j.cobme.2017.11.001","author":"A Panda","year":"2017","unstructured":"Panda A, Mehta BB, Coppo S, Jiang Y, Ma D, Seiberlich N, Griswold MA, Gulani V. Magnetic resonance fingerprinting-an overview. Curr Opin Biomed Eng. 2017. https:\/\/doi.org\/10.1016\/j.cobme.2017.11.001.","journal-title":"Curr Opin Biomed Eng"},{"issue":"5","key":"636_CR12","doi-asserted-by":"publisher","first-page":"1724","DOI":"10.1002\/mrm.26561","volume":"78","author":"B Rieger","year":"2017","unstructured":"Rieger B, Zimmer F, Zapp J, Weingartner S, Schad LR. Magnetic Resonance Fingerprinting using echo planar imaging Joint quantification of T1 and relaxation times. Magn Reson Med. 2017;78(5):1724\u201333.","journal-title":"Magn Reson Med"},{"issue":"1","key":"636_CR13","doi-asserted-by":"publisher","first-page":"2045","DOI":"10.1038\/s41598-018-24920-z","volume":"8","author":"B Rieger","year":"2018","unstructured":"Rieger B, Ak\u00e7akaya M, Pariente JC, Llufriu S, Martinez-Heras E, Weingartner S, Schad LR. Time efficient whole-brain coverage with mr fingerprinting using slice-interleaved echo-planar-imaging. Sci Rep. 2018;8(1):2045\u2013322.","journal-title":"Sci Rep"},{"issue":"6","key":"636_CR14","doi-asserted-by":"publisher","first-page":"1940","DOI":"10.1002\/mrm.28160","volume":"83","author":"I Hermann","year":"2020","unstructured":"Hermann I, Chacon-Caldera J, Brumer I, Rieger B, Weingartner S, Schad LR, Z\u00f6llner FG. Magnetic resonance fingerprinting for simultaneous renal t1 and t2* mapping in a single breath-hold. Magn Reson Med. 2020;83(6):1940\u20138. https:\/\/doi.org\/10.1002\/mrm.28160.","journal-title":"Magn Reson Med"},{"key":"636_CR15","doi-asserted-by":"publisher","unstructured":"Khajehim, M., Christen, T., Chen, J.J.: Magnetic resonance fingerprinting with combined gradient- and spin-echo echo-planar imaging: simultaneous estimation of t1, t2 and t2* with integrated-b1 correction. bioRxiv (2019). https:\/\/doi.org\/10.1101\/604546. https:\/\/www.biorxiv.org\/content\/early\/2019\/04\/10\/604546.full.pdf","DOI":"10.1101\/604546"},{"key":"636_CR16","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1002\/mrm.28688","volume":"00","author":"I Hermann","year":"2021","unstructured":"Hermann I, Mart\u00ednez-Heras E, Rieger B, Schmidt R, Golla A-K, Hong J-S, Lee W-K, Yu-Te W, Nagetegaal M, Solana E, Llufriu S, Gass A, Schad LR, Weing\u00e4rtner S, Z\u00f6llner FG. Accelerated white matter lesion analysis based on simultaneous t1 and t2* quantification using magnetic resonance fingerprinting and deep learning. Magn Reson Med. 2021;00:1\u201316. https:\/\/doi.org\/10.1002\/mrm.28688.","journal-title":"Magn Reson Med"},{"issue":"2","key":"636_CR17","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1016\/j.zemedi.2018.11.002","volume":"29","author":"AS Lundervold","year":"2019","unstructured":"Lundervold AS, Lundervold A. An overview of deep learning in medical imaging focusing on mri. Z Med Phys. 2019;29(2):102\u201327. https:\/\/doi.org\/10.1016\/j.zemedi.2018.11.002.","journal-title":"Z Med Phys"},{"key":"636_CR18","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1016\/j.media.2017.07.006","volume":"42","author":"A Benou","year":"2017","unstructured":"Benou A, Veksler R, Friedman A, Riklin Raviv T. Ensemble of expert deep neural networks for spatio-temporal denoising of contrast-enhanced mri sequences. Med Image Anal. 2017;42:145\u201359. https:\/\/doi.org\/10.1016\/j.media.2017.07.006.","journal-title":"Med Image Anal"},{"issue":"9","key":"636_CR19","doi-asserted-by":"publisher","first-page":"1900","DOI":"10.1109\/TBME.2018.2822826","volume":"65","author":"X Cao","year":"2018","unstructured":"Cao X, Yang J, Zhang J, Wang Q, Yap P, Shen D. Deformable image registration using a cue-aware deep regression network. IEEE Trans Bio-Med Eng. 2018;65(9):1900\u201311.","journal-title":"IEEE Trans Bio-Med Eng"},{"issue":"2","key":"636_CR20","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1016\/j.zemedi.2018.12.003","volume":"29","author":"A Maier","year":"2019","unstructured":"Maier A, Syben C, Lasser T, Riess C. A gentle introduction to deep learning in medical image processing. Z Med Phys. 2019;29(2):86\u2013101. https:\/\/doi.org\/10.1016\/j.zemedi.2018.12.003.","journal-title":"Z Med Phys"},{"issue":"1","key":"636_CR21","doi-asserted-by":"publisher","first-page":"439","DOI":"10.1002\/mrm.27420","volume":"81","author":"M Akcakaya","year":"2019","unstructured":"Akcakaya M, Moeller S, Weing\u00e4rtner S, Ugurbil K. Scan-specific robust artificial-neural-networks for k-space interpolation (raki) reconstruction: database-free deep learning for fast imaging. Magn Reson Med. 2019;81(1):439\u201353. https:\/\/doi.org\/10.1002\/mrm.27420.","journal-title":"Magn Reson Med"},{"issue":"6","key":"636_CR22","doi-asserted-by":"publisher","first-page":"3055","DOI":"10.1002\/mrm.26977","volume":"79","author":"K Hammernik","year":"2018","unstructured":"Hammernik K, Klatzer T, Kobler E, Recht MP, Sodickson DK, Pock T, Knoll F. Learning a variational network for reconstruction of accelerated mri data. Magn Reson Med. 2018;79(6):3055\u201371. https:\/\/doi.org\/10.1002\/mrm.26977.","journal-title":"Magn Reson Med"},{"issue":"2","key":"636_CR23","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1109\/TMI.2017.2760978","volume":"37","author":"J Schlemper","year":"2018","unstructured":"Schlemper J, Caballero J, Hajnal JV, Price AN, Rueckert D. A deep cascade of convolutional neural networks for dynamic mr image reconstruction. IEEE Trans Med Imaging. 2018;37(2):491\u2013503.","journal-title":"IEEE Trans Med Imaging"},{"key":"636_CR24","doi-asserted-by":"crossref","unstructured":"Ronneberger, O., P.Fischer, Brox, T.: U-net: Convolutional networks for biomedical image segmentation. In: Medical image computing and computer-assisted intervention (MICCAI). LNCS, vol. 9351, pp. 234\u2013241. Springer (2015). http:\/\/lmb.informatik.uni-freiburg.de\/Publications\/2015\/RFB15a.","DOI":"10.1007\/978-3-319-24574-4_28"},{"key":"636_CR25","doi-asserted-by":"publisher","first-page":"364","DOI":"10.1016\/j.neucom.2018.05.103","volume":"312","author":"W Yao","year":"2018","unstructured":"Yao W, Zeng Z, Lian C, Tang H. Pixel-wise regression using u-net and its application on pansharpening. Neurocomputing. 2018;312:364\u201371. https:\/\/doi.org\/10.1016\/j.neucom.2018.05.103.","journal-title":"Neurocomputing"},{"key":"636_CR26","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1016\/j.nicl.2017.10.007","volume":"17","author":"P Moeskops","year":"2018","unstructured":"Moeskops P, de Bresser J, Kuijf HJ, Mendrik AM, Biessels GJ, Pluim JPW, Isgum I. Evaluation of a deep learning approach for the segmentation of brain tissues and white matter hyperintensities of presumed vascular origin in mri. Neuroimage Clin. 2018;17:251\u201362. https:\/\/doi.org\/10.1016\/j.nicl.2017.10.007.","journal-title":"Neuroimage Clin"},{"key":"636_CR27","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1002\/mrm.27198","volume":"243","author":"E Hoppe","year":"2017","unstructured":"Hoppe E, K\u00f6rzd\u00f6rfer G, W\u00fcrfl T, Wetzl J, Lugauer F, Pfeuffer J, Maier A. Deep learning for magnetic resonance fingerprinting: a new approach for predicting quantitative parameter values from time series. Stud Health Technol Inform. 2017;243:202\u20136. https:\/\/doi.org\/10.1002\/mrm.27198.","journal-title":"Stud Health Technol Inform"},{"issue":"10","key":"636_CR28","doi-asserted-by":"publisher","first-page":"2364","DOI":"10.1109\/TMI.2019.2899328","volume":"38","author":"Z Fang","year":"2019","unstructured":"Fang Z, Chen Y, Liu M, Xiang L, Zhang Q, Wang Q, Lin W, Shen D. Deep learning for fast and spatially constrained tissue quantification from highly accelerated data in magnetic resonance fingerprinting. IEEE Trans Med Imaging. 2019;38(10):2364\u201374.","journal-title":"IEEE Trans Med Imaging"},{"key":"636_CR29","unstructured":"Balsiger, F., Scheidegger, O., Carlier, P.G., Marty, B., Reyes, M.: On the spatial and temporal influence for the reconstruction of magnetic resonance fingerprinting. In: Cardoso, M.J., Feragen, A., Glocker, B., Konukoglu, E., Oguz, I., Unal, G., Vercauteren, T. (eds.) Proceedings of machine learning research, vol. 102, pp. 27\u201338. PMLR, London, United Kingdom (2019)."},{"key":"636_CR30","doi-asserted-by":"publisher","first-page":"126","DOI":"10.3233\/SHTI190816","volume":"267","author":"E Hoppe","year":"2019","unstructured":"Hoppe E, Thamm F, K\u00f6rzd\u00f6rfer G, Syben C, Schirrmacher F, Nittka M, Pfeuffer J, Meyer H, Maier A. Magnetic resonance fingerprinting reconstruction using recurrent neural networks. Stud Health Technol Inform. 2019;267:126\u201333. https:\/\/doi.org\/10.3233\/SHTI190816.","journal-title":"Stud Health Technol Inform"},{"issue":"2","key":"636_CR31","doi-asserted-by":"publisher","first-page":"579","DOI":"10.1002\/mrm.28136","volume":"84","author":"Z Fang","year":"2020","unstructured":"Fang Z, Chen Y, Hung S-C, Zhang X, Lin W, Shen D. Submillimeter mr fingerprinting using deep learning-based tissue quantification. Magn Reson Med. 2020;84(2):579\u201391. https:\/\/doi.org\/10.1002\/mrm.28136.","journal-title":"Magn Reson Med"},{"key":"636_CR32","doi-asserted-by":"publisher","first-page":"116329","DOI":"10.1016\/j.neuroimage.2019.116329","volume":"206","author":"Y Chen","year":"2020","unstructured":"Chen Y, Fang Z, Hung S-C, Chang W-T, Shen D, Lin W. High-resolution 3d mr fingerprinting using parallel imaging and deep learning. NeuroImage. 2020;206:116329. https:\/\/doi.org\/10.1016\/j.neuroimage.2019.116329.","journal-title":"NeuroImage"},{"issue":"1","key":"636_CR33","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1016\/j.ins.2011.10.011","volume":"186","author":"X Llad\u00f3","year":"2012","unstructured":"Llad\u00f3 X, Oliver A, Cabezas M, Freixenet J, Vilanova JC, Quiles A, Valls L, Rami\u00f3-Torrent\u00e0 L, Rovira \u00c0. Segmentation of multiple sclerosis lesions in brain mri: a review of automated approaches. Inf Sci. 2012;186(1):164\u201385. https:\/\/doi.org\/10.1016\/j.ins.2011.10.011.","journal-title":"Inf Sci."},{"key":"636_CR34","doi-asserted-by":"publisher","first-page":"102335","DOI":"10.1016\/j.nicl.2020.102335","volume":"27","author":"F La Rosa","year":"2020","unstructured":"La Rosa F, Abdulkadir A, Fartaria MJ, Rahmanzadeh R, Lu P-J, Galbusera R, Barakovic M, Thiran J-P, Granziera C, Cuadra MB. Multiple sclerosis cortical and wm lesion segmentation at 3t mri: a deep learning method based on flair and mp2rage. Neuroimage Clin. 2020;27:102335. https:\/\/doi.org\/10.1016\/j.nicl.2020.102335.","journal-title":"Neuroimage Clin."},{"key":"636_CR35","doi-asserted-by":"publisher","first-page":"102104","DOI":"10.1016\/j.nicl.2019.102104","volume":"25","author":"R McKinley","year":"2020","unstructured":"McKinley R, Wepfer R, Grunder L, Aschwanden F, Fischer T, Friedli C, Muri R, Rummel C, Verma R, Weisstanner C, Wiestler B, Berger C, Eichinger P, Muhlau M, Reyes M, Salmen A, Chan A, Wiest R, Wagner F. Automatic detection of lesion load change in multiple sclerosis using convolutional neural networks with segmentation confidence. Neuroimage Clin. 2020;25:102104. https:\/\/doi.org\/10.1016\/j.nicl.2019.102104.","journal-title":"Neuroimage Clin"},{"key":"636_CR36","doi-asserted-by":"publisher","first-page":"55","DOI":"10.3389\/fninf.2020.610967","volume":"14","author":"C Zeng","year":"2020","unstructured":"Zeng C, Gu L, Liu Z, Zhao S. Review of deep learning approaches for the segmentation of multiple sclerosis lesions on brain mri. Front Neuroinform. 2020;14:55. https:\/\/doi.org\/10.3389\/fninf.2020.610967.","journal-title":"Front Neuroinform"},{"key":"636_CR37","doi-asserted-by":"publisher","first-page":"234","DOI":"10.1007\/978-3-030-32251-9_26","volume-title":"Medical image computing and computer assisted intervention\u2014MICCAI 2019","author":"KMH van Wijnen","year":"2019","unstructured":"van Wijnen KMH, Dubost F, Yilmaz P, Ikram MA, Niessen WJ, Adams H, Vernooij MW, de Bruijne M. Automated lesion detection by regressing intensity-based distance with a neural network. In: Shen D, Liu T, Peters TM, Staib LH, Essert C, Zhou S, Yap P-T, Khan A, editors. Medical image computing and computer assisted intervention\u2014MICCAI 2019. Cham: Springer; 2019. p. 234\u201342."},{"key":"636_CR38","doi-asserted-by":"crossref","unstructured":"Schnurr, A.-K., Eisele, P., Rossmanith, C., Hoffmann, S., Gregori, J., Dabringhaus, A., Kraemer, M., Kern, R., Gass, A., Z\u00f6llner, F.G.: Deep voxel-guided morphometry (vgm): learning regional brain changes in serial mri. In: Third international workshop machine learning in clinical neuroimaging, MLCN 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, pp. 159\u2013168. Springer (2020).","DOI":"10.1007\/978-3-030-66843-3_16"},{"issue":"142","key":"636_CR39","doi-asserted-by":"publisher","first-page":"394","DOI":"10.1016\/j.neuroimage.2016.08.016","volume":"15","author":"J Veraart","year":"2016","unstructured":"Veraart J, Novikov DS, Christiaens D, Ades-aron B, Sijbers J, Fieremans E. Denoising of diffusion mri using random matrix theory. NeuroImage. 2016;15(142):394\u2013406. https:\/\/doi.org\/10.1016\/j.neuroimage.2016.08.016.","journal-title":"NeuroImage"},{"issue":"3","key":"636_CR40","doi-asserted-by":"publisher","first-page":"786","DOI":"10.1016\/j.neuroimage.2008.12.037","volume":"46","author":"A Klein","year":"2009","unstructured":"Klein A, Andersson J, Ardekani BA, Ashburner J, Avants B, Chiang M-C, Christensen GE, Collins DL, Gee J, Hellier P, Song JH, Jenkinson M, Lepage C, Rueckert D, Thompson P, Vercauteren T, Woods RP, Mann JJ, Parsey RV. Evaluation of 14 nonlinear deformation algorithms applied to human brain mri registration. NeuroImage. 2009;46(3):786\u2013802. https:\/\/doi.org\/10.1016\/j.neuroimage.2008.12.037.","journal-title":"NeuroImage"},{"key":"636_CR41","unstructured":"Ashburner, J., Balbastre, Y., Barnes, G., Brudfors, M.: SPM12 (2014). https:\/\/www.fil.ion.ucl.ac.uk\/spm\/software\/spm12\/."},{"key":"636_CR42","doi-asserted-by":"publisher","first-page":"503","DOI":"10.3389\/fnins.2016.00503","volume":"10","author":"DL Tudorascu","year":"2016","unstructured":"Tudorascu DL, Karim HT, Maronge JM, Alhilali L, Fakhran S, Aizenstein HJ, Muschelli J, Crainiceanu CM. Reproducibility and bias in healthy brain segmentation: comparison of two popular neuroimaging platforms. Front Neurosci. 2016;10:503. https:\/\/doi.org\/10.3389\/fnins.2016.00503.","journal-title":"Front Neurosci"},{"issue":"1","key":"636_CR43","doi-asserted-by":"publisher","first-page":"71","DOI":"10.3233\/BPL-160033","volume":"2","author":"AL MacKay","year":"2016","unstructured":"MacKay AL, Laule C. Magnetic resonance of myelin water: an in vivo marker for myelin. Brain Plast. 2016;2(1):71\u201391.","journal-title":"Brain Plast"},{"key":"636_CR44","doi-asserted-by":"publisher","first-page":"117014","DOI":"10.1016\/j.neuroimage.2020.117014","volume":"219","author":"M Nagtegaal","year":"2020","unstructured":"Nagtegaal M, Koken P, Amthor T, de Bresser J, M\u00e4dler B, Vos F, Doneva M. Myelin water imaging from multi-echo t2 mr relaxometry data using a joint sparsity constraint. NeuroImage. 2020;219:117014. https:\/\/doi.org\/10.1016\/j.neuroimage.2020.117014.","journal-title":"NeuroImage"},{"key":"636_CR45","doi-asserted-by":"publisher","unstructured":"Dong, Z., Wang, F., Chan, K.-S., Reese, T.G., Bilgic, B., Marques, J.P., Setsompop, K.: Variable flip angle echo planar time-resolved imaging (vfa-epti) for fast high-resolution gradient echo myelin water imaging. NeuroImage, 117897 (2021). https:\/\/doi.org\/10.1016\/j.neuroimage.2021.117897.","DOI":"10.1016\/j.neuroimage.2021.117897."},{"issue":"2","key":"636_CR46","doi-asserted-by":"publisher","first-page":"360","DOI":"10.1002\/jmri.27059","volume":"53","author":"J Lee","year":"2021","unstructured":"Lee J, Hyun J-W, Lee J, Choi E-J, Shin H-G, Min K, Nam Y, Kim HJ, Oh S-H. So you want to image myelin using mri: an overview and practical guide for myelin water imaging. J Magn Reson Imaging. 2021;53(2):360\u201373. https:\/\/doi.org\/10.1002\/jmri.27059.","journal-title":"J Magn Reson Imaging"}],"container-title":["BMC Medical Imaging"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12880-021-00636-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12880-021-00636-x\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12880-021-00636-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,7,8]],"date-time":"2021-07-08T06:05:47Z","timestamp":1625724347000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcmedimaging.biomedcentral.com\/articles\/10.1186\/s12880-021-00636-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,7,8]]},"references-count":46,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2021,12]]}},"alternative-id":["636"],"URL":"https:\/\/doi.org\/10.1186\/s12880-021-00636-x","relation":{"has-preprint":[{"id-type":"doi","id":"10.21203\/rs.3.rs-324286\/v1","asserted-by":"object"}]},"ISSN":["1471-2342"],"issn-type":[{"value":"1471-2342","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,7,8]]},"assertion":[{"value":"24 February 2021","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"24 June 2021","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 July 2021","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This bicenter study was approved by the local institutional review board at both sites (2019-711N, BCB2012\/7965), and written, informed consent was obtained prior to scanning.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare that they have no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"Medizinische Fakult\u00edt Mannheim der Ruprecht-Karls-Universit\u00edt Heidelberg z. Hd. Songhui Cao\/Manja Goerner\/Kathrin Heberlein Zentrum Medizinischer Forschung Haus 42, 3. OG Theodor-Kutzer-Ufer 1-3 68167 Mannheim, Germany","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethik-Kommission site 1 (2019-711N)"}},{"value":"Secretario del Comit\u00e9 \u00c9tico de Investigaci\u00f3n Cl\u00ednica del Hospital Cl\u00ednic de Barcelona. Joaquim For\u00e9s I Vineta, Andrea Scalise, Ana Lucia Arellano Andrino, Hospital Clinic, calle Villarroel 170 08036 Barcelona, Spain.","order":6,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethik-Kommission site 2 (BCB2012\/7965)"}}],"article-number":"107"}}